data_2YDH
# 
_entry.id   2YDH 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.383 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   2YDH         pdb_00002ydh 10.2210/pdb2ydh/pdb 
PDBE  EBI-47769    ?            ?                   
WWPDB D_1290047769 ?            ?                   
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          2YGH 
_pdbx_database_related.content_type   unspecified 
_pdbx_database_related.details        'SAM-I RIBOSWITCH WITH A G2NA MUTATION IN THE KINK TURN IN COMPLEX WITH S-ADENOSYLMETHIONINE' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        2YDH 
_pdbx_database_status.deposit_site                    PDBE 
_pdbx_database_status.process_site                    PDBE 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.recvd_initial_deposition_date   2011-03-21 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Schroeder, K.T.' 1 
'Daldrop, P.'     2 
'Lilley, D.M.J.'  3 
# 
_citation.id                        primary 
_citation.title                     'RNA Tertiary Interactions in a Riboswitch Stabilize the Structure of a Kink Turn.' 
_citation.journal_abbrev            Structure 
_citation.journal_volume            19 
_citation.page_first                1233 
_citation.page_last                 ? 
_citation.year                      2011 
_citation.journal_id_ASTM           STRUE6 
_citation.country                   UK 
_citation.journal_id_ISSN           0969-2126 
_citation.journal_id_CSD            2005 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   21893284 
_citation.pdbx_database_id_DOI      10.1016/J.STR.2011.07.003 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Schroeder, K.T.' 1 ? 
primary 'Daldrop, P.'     2 ? 
primary 'Lilley, D.M.J.'  3 ? 
# 
_cell.entry_id           2YDH 
_cell.length_a           61.899 
_cell.length_b           61.899 
_cell.length_c           157.628 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         2YDH 
_symmetry.space_group_name_H-M             'P 43 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                96 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 'SAM-I RIBOSWITCH'   30490.258 1 ? YES ? 'APTAMER DOMAIN' 
2 non-polymer syn 'BARIUM ION'         137.327   5 ? ?   ? ?                
3 non-polymer syn S-ADENOSYLMETHIONINE 398.437   1 ? ?   ? ?                
4 water       nat water                18.015    2 ? ?   ? ?                
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       
;GGCUUAUCAAGAGAGGUUUAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU
UGAAAGAUGAGCCG
;
_entity_poly.pdbx_seq_one_letter_code_can   
;GGCUUAUCAAGAGAGGUUUAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU
UGAAAGAUGAGCCG
;
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  G n 
1 2  G n 
1 3  C n 
1 4  U n 
1 5  U n 
1 6  A n 
1 7  U n 
1 8  C n 
1 9  A n 
1 10 A n 
1 11 G n 
1 12 A n 
1 13 G n 
1 14 A n 
1 15 G n 
1 16 G n 
1 17 U n 
1 18 U n 
1 19 U n 
1 20 A n 
1 21 G n 
1 22 G n 
1 23 G n 
1 24 A n 
1 25 C n 
1 26 U n 
1 27 G n 
1 28 G n 
1 29 C n 
1 30 C n 
1 31 C n 
1 32 G n 
1 33 A n 
1 34 C n 
1 35 G n 
1 36 A n 
1 37 A n 
1 38 A n 
1 39 C n 
1 40 C n 
1 41 C n 
1 42 G n 
1 43 G n 
1 44 C n 
1 45 A n 
1 46 A n 
1 47 C n 
1 48 C n 
1 49 A n 
1 50 G n 
1 51 A n 
1 52 A n 
1 53 A n 
1 54 U n 
1 55 G n 
1 56 G n 
1 57 U n 
1 58 G n 
1 59 C n 
1 60 C n 
1 61 A n 
1 62 A n 
1 63 U n 
1 64 U n 
1 65 C n 
1 66 C n 
1 67 U n 
1 68 G n 
1 69 C n 
1 70 A n 
1 71 G n 
1 72 C n 
1 73 G n 
1 74 G n 
1 75 A n 
1 76 A n 
1 77 A n 
1 78 C n 
1 79 G n 
1 80 U n 
1 81 U n 
1 82 G n 
1 83 A n 
1 84 A n 
1 85 A n 
1 86 G n 
1 87 A n 
1 88 U n 
1 89 G n 
1 90 A n 
1 91 G n 
1 92 C n 
1 93 C n 
1 94 G n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    'THERMOANAEROBACTER TENGCONGENSIS' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       119072 
_pdbx_entity_src_syn.details                ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    2YDH 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_db_accession          2YDH 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              2YDH 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 94 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             2YDH 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  94 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       94 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
BA  non-polymer   . 'BARIUM ION'                 ? 'Ba 2'            137.327 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
HOH non-polymer   . WATER                        ? 'H2 O'            18.015  
SAM non-polymer   . S-ADENOSYLMETHIONINE         ? 'C15 H22 N6 O5 S' 398.437 
U   'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O9 P'  324.181 
# 
_exptl.entry_id          2YDH 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.31 
_exptl_crystal.density_percent_sol   64 
_exptl_crystal.description           NONE 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          ? 
_exptl_crystal_grow.temp            ? 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7 
_exptl_crystal_grow.pdbx_pH_range   ? 
_exptl_crystal_grow.pdbx_details    '40 MM NA-CACODYLATE (PH 7.0), 12 MM SPERMINE-HCL, 12% (V/V) MPD, 80 MM KCL.' 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   'ADSC QUANTUM 315r' 
_diffrn_detector.pdbx_collection_date   2010-12-06 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.979 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'ESRF BEAMLINE ID14-4' 
_diffrn_source.pdbx_synchrotron_site       ESRF 
_diffrn_source.pdbx_synchrotron_beamline   ID14-4 
_diffrn_source.pdbx_wavelength             0.979 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
_reflns.entry_id                     2YDH 
_reflns.observed_criterion_sigma_I   2.0 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             50.00 
_reflns.d_resolution_high            2.90 
_reflns.number_obs                   6875 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         93.1 
_reflns.pdbx_Rmerge_I_obs            0.05 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        40.60 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              6.1 
# 
_reflns_shell.pdbx_diffrn_id         1 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.d_res_high             2.90 
_reflns_shell.d_res_low              3.00 
_reflns_shell.percent_possible_all   64.5 
_reflns_shell.Rmerge_I_obs           0.42 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    2.44 
_reflns_shell.pdbx_redundancy        5.6 
# 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.entry_id                                 2YDH 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.ls_number_reflns_obs                     6121 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          . 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             57.62 
_refine.ls_d_res_high                            2.90 
_refine.ls_percent_reflns_obs                    92.52 
_refine.ls_R_factor_obs                          0.27406 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.26892 
_refine.ls_R_factor_R_free                       0.32145 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 9.8 
_refine.ls_number_reflns_R_free                  666 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.925 
_refine.correlation_coeff_Fo_to_Fc_free          0.893 
_refine.B_iso_mean                               88.153 
_refine.aniso_B[1][1]                            3.89 
_refine.aniso_B[2][2]                            3.89 
_refine.aniso_B[3][3]                            -7.78 
_refine.aniso_B[1][2]                            0.00 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.40 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' 
_refine.pdbx_starting_model                      'PDB ENTRY 3GX5' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  0.573 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   2024 
_refine_hist.pdbx_number_atoms_ligand         32 
_refine_hist.number_atoms_solvent             2 
_refine_hist.number_atoms_total               2058 
_refine_hist.d_res_high                       2.90 
_refine_hist.d_res_low                        57.62 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d             0.010 0.021 ? 2287 'X-RAY DIFFRACTION' ? 
r_bond_other_d               0.000 0.020 ? 785  'X-RAY DIFFRACTION' ? 
r_angle_refined_deg          1.914 3.000 ? 3564 'X-RAY DIFFRACTION' ? 
r_angle_other_deg            1.531 3.000 ? 2047 'X-RAY DIFFRACTION' ? 
r_dihedral_angle_1_deg       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_dihedral_angle_2_deg       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_dihedral_angle_3_deg       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_dihedral_angle_4_deg       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_chiral_restr               0.074 0.200 ? 475  'X-RAY DIFFRACTION' ? 
r_gen_planes_refined         0.007 0.020 ? 996  'X-RAY DIFFRACTION' ? 
r_gen_planes_other           0.010 0.020 ? 202  'X-RAY DIFFRACTION' ? 
r_nbd_refined                ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_nbd_other                  ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_nbtor_refined              ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_nbtor_other                ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined        ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_other          ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_metal_ion_refined          ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_metal_ion_other            ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_other         ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined     ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_other       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_refined ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_other   ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_mcbond_it                  ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_mcbond_other               ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_mcangle_it                 ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_mcangle_other              ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_scbond_it                  ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_scbond_other               ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_scangle_it                 ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_scangle_other              ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_long_range_B_refined       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_long_range_B_other         ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_rigid_bond_restr           ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_sphericity_free            ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_sphericity_bonded          ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       2.900 
_refine_ls_shell.d_res_low                        2.975 
_refine_ls_shell.number_reflns_R_work             304 
_refine_ls_shell.R_factor_R_work                  0.439 
_refine_ls_shell.percent_reflns_obs               62.29 
_refine_ls_shell.R_factor_R_free                  0.536 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             28 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
# 
_struct.entry_id                  2YDH 
_struct.title                     'Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        2YDH 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'RNA, K-TURN' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 2 ? 
D N N 2 ? 
E N N 2 ? 
F N N 2 ? 
G N N 3 ? 
H N N 4 ? 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A A 9  "O3'" ? ? ? 1_555 D BA .  BA ? ? A A 9  A BA 1097 1_555 ? ? ? ? ? ? ?             3.483 ? ? 
metalc2  metalc ? ? A A 10 OP2   ? ? ? 1_555 D BA .  BA ? ? A A 10 A BA 1097 1_555 ? ? ? ? ? ? ?             2.866 ? ? 
metalc3  metalc ? ? A G 27 O6    ? ? ? 1_555 B BA .  BA ? ? A G 27 A BA 1095 1_555 ? ? ? ? ? ? ?             2.780 ? ? 
metalc4  metalc ? ? A G 28 O6    ? ? ? 1_555 B BA .  BA ? ? A G 28 A BA 1095 1_555 ? ? ? ? ? ? ?             3.577 ? ? 
metalc5  metalc ? ? A U 64 "O2'" ? ? ? 1_555 C BA .  BA ? ? A U 64 A BA 1096 1_555 ? ? ? ? ? ? ?             2.905 ? ? 
metalc6  metalc ? ? A U 64 O2    ? ? ? 1_555 C BA .  BA ? ? A U 64 A BA 1096 1_555 ? ? ? ? ? ? ?             3.353 ? ? 
metalc7  metalc ? ? A U 64 OP2   ? ? ? 1_555 D BA .  BA ? ? A U 64 A BA 1097 1_555 ? ? ? ? ? ? ?             2.453 ? ? 
metalc8  metalc ? ? A U 67 O4    ? ? ? 1_555 C BA .  BA ? ? A U 67 A BA 1096 1_555 ? ? ? ? ? ? ?             3.400 ? ? 
hydrog1  hydrog ? ? A G 1  N1    ? ? ? 1_555 A C  93 N3 ? ? A G 1  A C  93   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog2  hydrog ? ? A G 1  N2    ? ? ? 1_555 A C  93 O2 ? ? A G 1  A C  93   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog3  hydrog ? ? A G 1  O6    ? ? ? 1_555 A C  93 N4 ? ? A G 1  A C  93   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog4  hydrog ? ? A G 2  N1    ? ? ? 1_555 A C  92 N3 ? ? A G 2  A C  92   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog5  hydrog ? ? A G 2  N2    ? ? ? 1_555 A C  92 O2 ? ? A G 2  A C  92   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog6  hydrog ? ? A G 2  O6    ? ? ? 1_555 A C  92 N4 ? ? A G 2  A C  92   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog7  hydrog ? ? A C 3  N3    ? ? ? 1_555 A G  91 N1 ? ? A C 3  A G  91   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog8  hydrog ? ? A C 3  N4    ? ? ? 1_555 A G  91 O6 ? ? A C 3  A G  91   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog9  hydrog ? ? A C 3  O2    ? ? ? 1_555 A G  91 N2 ? ? A C 3  A G  91   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog10 hydrog ? ? A U 4  N3    ? ? ? 1_555 A A  90 N1 ? ? A U 4  A A  90   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog11 hydrog ? ? A U 4  O4    ? ? ? 1_555 A A  90 N6 ? ? A U 4  A A  90   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog12 hydrog ? ? A U 5  N3    ? ? ? 1_555 A G  89 O6 ? ? A U 5  A G  89   1_555 ? ? ? ? ? ? TYPE_28_PAIR  ?     ? ? 
hydrog13 hydrog ? ? A U 5  O2    ? ? ? 1_555 A G  89 N1 ? ? A U 5  A G  89   1_555 ? ? ? ? ? ? TYPE_28_PAIR  ?     ? ? 
hydrog14 hydrog ? ? A A 6  N1    ? ? ? 1_555 A U  88 N3 ? ? A A 6  A U  88   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog15 hydrog ? ? A A 6  N6    ? ? ? 1_555 A U  88 O4 ? ? A A 6  A U  88   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog16 hydrog ? ? A U 7  N3    ? ? ? 1_555 A A  87 N1 ? ? A U 7  A A  87   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog17 hydrog ? ? A U 7  O4    ? ? ? 1_555 A A  87 N6 ? ? A U 7  A A  87   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog18 hydrog ? ? A C 8  N3    ? ? ? 1_555 A G  86 N1 ? ? A C 8  A G  86   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog19 hydrog ? ? A C 8  N4    ? ? ? 1_555 A G  86 O6 ? ? A C 8  A G  86   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog20 hydrog ? ? A C 8  O2    ? ? ? 1_555 A G  86 N2 ? ? A C 8  A G  86   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog21 hydrog ? ? A G 11 N2    ? ? ? 1_555 A C  44 O2 ? ? A G 11 A C  44   1_555 ? ? ? ? ? ? 'G-C PAIR'    ?     ? ? 
hydrog22 hydrog ? ? A A 12 N3    ? ? ? 1_555 A G  43 N2 ? ? A A 12 A G  43   1_555 ? ? ? ? ? ? 'A-G MISPAIR' ?     ? ? 
hydrog23 hydrog ? ? A G 13 N1    ? ? ? 1_555 A C  41 N3 ? ? A G 13 A C  41   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog24 hydrog ? ? A G 13 N2    ? ? ? 1_555 A C  41 O2 ? ? A G 13 A C  41   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog25 hydrog ? ? A G 13 O6    ? ? ? 1_555 A C  41 N4 ? ? A G 13 A C  41   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog26 hydrog ? ? A G 15 N1    ? ? ? 1_555 A C  40 N3 ? ? A G 15 A C  40   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog27 hydrog ? ? A G 15 N2    ? ? ? 1_555 A C  40 O2 ? ? A G 15 A C  40   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog28 hydrog ? ? A G 15 O6    ? ? ? 1_555 A C  40 N4 ? ? A G 15 A C  40   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog29 hydrog ? ? A G 16 N1    ? ? ? 1_555 A C  39 N3 ? ? A G 16 A C  39   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog30 hydrog ? ? A G 16 N2    ? ? ? 1_555 A C  39 O2 ? ? A G 16 A C  39   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog31 hydrog ? ? A G 16 O6    ? ? ? 1_555 A C  39 N4 ? ? A G 16 A C  39   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog32 hydrog ? ? A U 17 N3    ? ? ? 1_555 A A  38 N1 ? ? A U 17 A A  38   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog33 hydrog ? ? A U 17 O4    ? ? ? 1_555 A A  38 N6 ? ? A U 17 A A  38   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog34 hydrog ? ? A U 18 O2    ? ? ? 1_555 A A  37 N6 ? ? A U 18 A A  37   1_555 ? ? ? ? ? ? 'U-A PAIR'    ?     ? ? 
hydrog35 hydrog ? ? A U 19 O2    ? ? ? 1_555 A A  36 N6 ? ? A U 19 A A  36   1_555 ? ? ? ? ? ? 'U-A PAIR'    ?     ? ? 
hydrog36 hydrog ? ? A A 20 N3    ? ? ? 1_555 A G  32 N2 ? ? A A 20 A G  32   1_555 ? ? ? ? ? ? 'A-G MISPAIR' ?     ? ? 
hydrog37 hydrog ? ? A A 20 N6    ? ? ? 1_555 A G  35 N3 ? ? A A 20 A G  35   1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog38 hydrog ? ? A A 20 N7    ? ? ? 1_555 A G  35 N2 ? ? A A 20 A G  35   1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog39 hydrog ? ? A G 21 N1    ? ? ? 1_555 A C  31 N3 ? ? A G 21 A C  31   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog40 hydrog ? ? A G 21 N2    ? ? ? 1_555 A C  31 O2 ? ? A G 21 A C  31   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog41 hydrog ? ? A G 21 O6    ? ? ? 1_555 A C  31 N4 ? ? A G 21 A C  31   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog42 hydrog ? ? A G 22 N1    ? ? ? 1_555 A C  30 N3 ? ? A G 22 A C  30   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog43 hydrog ? ? A G 22 N2    ? ? ? 1_555 A C  30 O2 ? ? A G 22 A C  30   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog44 hydrog ? ? A G 22 O6    ? ? ? 1_555 A C  30 N4 ? ? A G 22 A C  30   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog45 hydrog ? ? A G 23 N1    ? ? ? 1_555 A C  29 N3 ? ? A G 23 A C  29   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog46 hydrog ? ? A G 23 N2    ? ? ? 1_555 A C  29 O2 ? ? A G 23 A C  29   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog47 hydrog ? ? A G 23 O6    ? ? ? 1_555 A C  29 N4 ? ? A G 23 A C  29   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog48 hydrog ? ? A G 23 N2    ? ? ? 1_555 A A  62 N1 ? ? A G 23 A A  62   1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog49 hydrog ? ? A G 23 N3    ? ? ? 1_555 A A  62 N6 ? ? A G 23 A A  62   1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog50 hydrog ? ? A A 24 N6    ? ? ? 1_555 A A  85 N3 ? ? A A 24 A A  85   1_555 ? ? ? ? ? ? 'A-A MISPAIR' ?     ? ? 
hydrog51 hydrog ? ? A C 25 N4    ? ? ? 1_555 A U  67 O4 ? ? A C 25 A U  67   1_555 ? ? ? ? ? ? 'C-U MISPAIR' ?     ? ? 
hydrog52 hydrog ? ? A C 25 O2    ? ? ? 1_555 A G  68 N2 ? ? A C 25 A G  68   1_555 ? ? ? ? ? ? 'C-G PAIR'    ?     ? ? 
hydrog53 hydrog ? ? A U 26 N3    ? ? ? 1_555 A U  67 O2 ? ? A U 26 A U  67   1_555 ? ? ? ? ? ? TYPE_16_PAIR  ?     ? ? 
hydrog54 hydrog ? ? A U 26 O4    ? ? ? 1_555 A U  67 N3 ? ? A U 26 A U  67   1_555 ? ? ? ? ? ? TYPE_16_PAIR  ?     ? ? 
hydrog55 hydrog ? ? A G 27 N1    ? ? ? 1_555 A C  66 N3 ? ? A G 27 A C  66   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog56 hydrog ? ? A G 27 N2    ? ? ? 1_555 A C  66 O2 ? ? A G 27 A C  66   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog57 hydrog ? ? A G 27 O6    ? ? ? 1_555 A C  66 N4 ? ? A G 27 A C  66   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog58 hydrog ? ? A G 28 N1    ? ? ? 1_555 A C  65 N3 ? ? A G 28 A C  65   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog59 hydrog ? ? A G 28 N2    ? ? ? 1_555 A C  65 O2 ? ? A G 28 A C  65   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog60 hydrog ? ? A G 28 O6    ? ? ? 1_555 A C  65 N4 ? ? A G 28 A C  65   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog61 hydrog ? ? A C 30 O2    ? ? ? 1_555 A A  61 N6 ? ? A C 30 A A  61   1_555 ? ? ? ? ? ? 'C-A MISPAIR' ?     ? ? 
hydrog62 hydrog ? ? A G 42 N1    ? ? ? 1_555 A C  60 N3 ? ? A G 42 A C  60   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog63 hydrog ? ? A G 42 N2    ? ? ? 1_555 A C  60 O2 ? ? A G 42 A C  60   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog64 hydrog ? ? A G 42 O6    ? ? ? 1_555 A C  60 N4 ? ? A G 42 A C  60   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog65 hydrog ? ? A G 43 N1    ? ? ? 1_555 A C  59 N3 ? ? A G 43 A C  59   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog66 hydrog ? ? A G 43 N2    ? ? ? 1_555 A C  59 O2 ? ? A G 43 A C  59   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog67 hydrog ? ? A G 43 O6    ? ? ? 1_555 A C  59 N4 ? ? A G 43 A C  59   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog68 hydrog ? ? A C 44 N3    ? ? ? 1_555 A G  58 N1 ? ? A C 44 A G  58   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog69 hydrog ? ? A C 44 N4    ? ? ? 1_555 A G  58 O6 ? ? A C 44 A G  58   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog70 hydrog ? ? A C 44 O2    ? ? ? 1_555 A G  58 N2 ? ? A C 44 A G  58   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog71 hydrog ? ? A C 47 N3    ? ? ? 1_555 A G  56 N1 ? ? A C 47 A G  56   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog72 hydrog ? ? A C 47 N4    ? ? ? 1_555 A G  56 O6 ? ? A C 47 A G  56   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog73 hydrog ? ? A C 47 O2    ? ? ? 1_555 A G  56 N2 ? ? A C 47 A G  56   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog74 hydrog ? ? A C 48 N3    ? ? ? 1_555 A G  55 N1 ? ? A C 48 A G  55   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog75 hydrog ? ? A C 48 N4    ? ? ? 1_555 A G  55 O6 ? ? A C 48 A G  55   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog76 hydrog ? ? A C 48 O2    ? ? ? 1_555 A G  55 N2 ? ? A C 48 A G  55   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog77 hydrog ? ? A A 49 N1    ? ? ? 1_555 A U  54 N3 ? ? A A 49 A U  54   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog78 hydrog ? ? A A 49 N6    ? ? ? 1_555 A U  54 O4 ? ? A A 49 A U  54   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog79 hydrog ? ? A U 64 N3    ? ? ? 1_555 A A  85 N1 ? ? A U 64 A A  85   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog80 hydrog ? ? A U 64 O4    ? ? ? 1_555 A A  85 N6 ? ? A U 64 A A  85   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog81 hydrog ? ? A C 69 N3    ? ? ? 1_555 A G  82 N1 ? ? A C 69 A G  82   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog82 hydrog ? ? A C 69 N4    ? ? ? 1_555 A G  82 O6 ? ? A C 69 A G  82   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog83 hydrog ? ? A C 69 O2    ? ? ? 1_555 A G  82 N2 ? ? A C 69 A G  82   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog84 hydrog ? ? A A 70 N1    ? ? ? 1_555 A U  81 N3 ? ? A A 70 A U  81   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog85 hydrog ? ? A A 70 N6    ? ? ? 1_555 A U  81 O4 ? ? A A 70 A U  81   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog86 hydrog ? ? A G 71 N1    ? ? ? 1_555 A U  80 O2 ? ? A G 71 A U  80   1_555 ? ? ? ? ? ? TYPE_28_PAIR  ?     ? ? 
hydrog87 hydrog ? ? A G 71 O6    ? ? ? 1_555 A U  80 N3 ? ? A G 71 A U  80   1_555 ? ? ? ? ? ? TYPE_28_PAIR  ?     ? ? 
hydrog88 hydrog ? ? A C 72 N3    ? ? ? 1_555 A G  79 N1 ? ? A C 72 A G  79   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog89 hydrog ? ? A C 72 N4    ? ? ? 1_555 A G  79 O6 ? ? A C 72 A G  79   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog90 hydrog ? ? A C 72 O2    ? ? ? 1_555 A G  79 N2 ? ? A C 72 A G  79   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog91 hydrog ? ? A G 73 N1    ? ? ? 1_555 A C  78 N3 ? ? A G 73 A C  78   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog92 hydrog ? ? A G 73 N2    ? ? ? 1_555 A C  78 O2 ? ? A G 73 A C  78   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog93 hydrog ? ? A G 73 O6    ? ? ? 1_555 A C  78 N4 ? ? A G 73 A C  78   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog94 hydrog ? ? A G 74 N2    ? ? ? 1_555 A A  77 N7 ? ? A G 74 A A  77   1_555 ? ? ? ? ? ? 'G-A MISPAIR' ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A BA  1095 ? 2  'BINDING SITE FOR RESIDUE BA A 1095'  
AC2 Software A BA  1096 ? 2  'BINDING SITE FOR RESIDUE BA A 1096'  
AC3 Software A BA  1097 ? 3  'BINDING SITE FOR RESIDUE BA A 1097'  
AC4 Software A SAM 1100 ? 11 'BINDING SITE FOR RESIDUE SAM A 1100' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 2  G A 27 ? G A 27 . ? 1_555 ? 
2  AC1 2  G A 28 ? G A 28 . ? 1_555 ? 
3  AC2 2  U A 64 ? U A 64 . ? 1_555 ? 
4  AC2 2  U A 67 ? U A 67 . ? 1_555 ? 
5  AC3 3  A A 9  ? A A 9  . ? 1_555 ? 
6  AC3 3  A A 10 ? A A 10 . ? 1_555 ? 
7  AC3 3  U A 64 ? U A 64 . ? 1_555 ? 
8  AC4 11 A A 6  ? A A 6  . ? 1_555 ? 
9  AC4 11 U A 7  ? U A 7  . ? 1_555 ? 
10 AC4 11 C A 8  ? C A 8  . ? 1_555 ? 
11 AC4 11 G A 11 ? G A 11 . ? 1_555 ? 
12 AC4 11 A A 45 ? A A 45 . ? 1_555 ? 
13 AC4 11 C A 47 ? C A 47 . ? 1_555 ? 
14 AC4 11 U A 57 ? U A 57 . ? 1_555 ? 
15 AC4 11 G A 58 ? G A 58 . ? 1_555 ? 
16 AC4 11 C A 59 ? C A 59 . ? 1_555 ? 
17 AC4 11 U A 88 ? U A 88 . ? 1_555 ? 
18 AC4 11 G A 89 ? G A 89 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          2YDH 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    2YDH 
_atom_sites.fract_transf_matrix[1][1]   0.016155 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.016155 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.006344 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BA 
C  
N  
O  
P  
S  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  G 1  1  1  G G A . n 
A 1 2  G 2  2  2  G G A . n 
A 1 3  C 3  3  3  C C A . n 
A 1 4  U 4  4  4  U U A . n 
A 1 5  U 5  5  5  U U A . n 
A 1 6  A 6  6  6  A A A . n 
A 1 7  U 7  7  7  U U A . n 
A 1 8  C 8  8  8  C C A . n 
A 1 9  A 9  9  9  A A A . n 
A 1 10 A 10 10 10 A A A . n 
A 1 11 G 11 11 11 G G A . n 
A 1 12 A 12 12 12 A A A . n 
A 1 13 G 13 13 13 G G A . n 
A 1 14 A 14 14 14 A A A . n 
A 1 15 G 15 15 15 G G A . n 
A 1 16 G 16 16 16 G G A . n 
A 1 17 U 17 17 17 U U A . n 
A 1 18 U 18 18 18 U U A . n 
A 1 19 U 19 19 19 U U A . n 
A 1 20 A 20 20 20 A A A . n 
A 1 21 G 21 21 21 G G A . n 
A 1 22 G 22 22 22 G G A . n 
A 1 23 G 23 23 23 G G A . n 
A 1 24 A 24 24 24 A A A . n 
A 1 25 C 25 25 25 C C A . n 
A 1 26 U 26 26 26 U U A . n 
A 1 27 G 27 27 27 G G A . n 
A 1 28 G 28 28 28 G G A . n 
A 1 29 C 29 29 29 C C A . n 
A 1 30 C 30 30 30 C C A . n 
A 1 31 C 31 31 31 C C A . n 
A 1 32 G 32 32 32 G G A . n 
A 1 33 A 33 33 33 A A A . n 
A 1 34 C 34 34 34 C C A . n 
A 1 35 G 35 35 35 G G A . n 
A 1 36 A 36 36 36 A A A . n 
A 1 37 A 37 37 37 A A A . n 
A 1 38 A 38 38 38 A A A . n 
A 1 39 C 39 39 39 C C A . n 
A 1 40 C 40 40 40 C C A . n 
A 1 41 C 41 41 41 C C A . n 
A 1 42 G 42 42 42 G G A . n 
A 1 43 G 43 43 43 G G A . n 
A 1 44 C 44 44 44 C C A . n 
A 1 45 A 45 45 45 A A A . n 
A 1 46 A 46 46 46 A A A . n 
A 1 47 C 47 47 47 C C A . n 
A 1 48 C 48 48 48 C C A . n 
A 1 49 A 49 49 49 A A A . n 
A 1 50 G 50 50 50 G G A . n 
A 1 51 A 51 51 51 A A A . n 
A 1 52 A 52 52 52 A A A . n 
A 1 53 A 53 53 53 A A A . n 
A 1 54 U 54 54 54 U U A . n 
A 1 55 G 55 55 55 G G A . n 
A 1 56 G 56 56 56 G G A . n 
A 1 57 U 57 57 57 U U A . n 
A 1 58 G 58 58 58 G G A . n 
A 1 59 C 59 59 59 C C A . n 
A 1 60 C 60 60 60 C C A . n 
A 1 61 A 61 61 61 A A A . n 
A 1 62 A 62 62 62 A A A . n 
A 1 63 U 63 63 63 U U A . n 
A 1 64 U 64 64 64 U U A . n 
A 1 65 C 65 65 65 C C A . n 
A 1 66 C 66 66 66 C C A . n 
A 1 67 U 67 67 67 U U A . n 
A 1 68 G 68 68 68 G G A . n 
A 1 69 C 69 69 69 C C A . n 
A 1 70 A 70 70 70 A A A . n 
A 1 71 G 71 71 71 G G A . n 
A 1 72 C 72 72 72 C C A . n 
A 1 73 G 73 73 73 G G A . n 
A 1 74 G 74 74 74 G G A . n 
A 1 75 A 75 75 75 A A A . n 
A 1 76 A 76 76 76 A A A . n 
A 1 77 A 77 77 77 A A A . n 
A 1 78 C 78 78 78 C C A . n 
A 1 79 G 79 79 79 G G A . n 
A 1 80 U 80 80 80 U U A . n 
A 1 81 U 81 81 81 U U A . n 
A 1 82 G 82 82 82 G G A . n 
A 1 83 A 83 83 83 A A A . n 
A 1 84 A 84 84 84 A A A . n 
A 1 85 A 85 85 85 A A A . n 
A 1 86 G 86 86 86 G G A . n 
A 1 87 A 87 87 87 A A A . n 
A 1 88 U 88 88 88 U U A . n 
A 1 89 G 89 89 89 G G A . n 
A 1 90 A 90 90 90 A A A . n 
A 1 91 G 91 91 91 G G A . n 
A 1 92 C 92 92 92 C C A . n 
A 1 93 C 93 93 93 C C A . n 
A 1 94 G 94 94 94 G G A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 BA  1 1095 1095 BA  BA  A . 
C 2 BA  1 1096 1096 BA  BA  A . 
D 2 BA  1 1097 1097 BA  BA  A . 
E 2 BA  1 1098 1098 BA  BA  A . 
F 2 BA  1 1099 1099 BA  BA  A . 
G 3 SAM 1 1100 1100 SAM SAM A . 
H 4 HOH 1 2001 2001 HOH HOH A . 
H 4 HOH 2 2002 2002 HOH HOH A . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 3210   ? 
1 MORE         -104.3 ? 
1 'SSA (A^2)'  28870  ? 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z        1.0000000000 0.0000000000  0.0000000000 0.0000000000 0.0000000000  1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000  
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 78.8140000000 
# 
_pdbx_struct_special_symmetry.id              1 
_pdbx_struct_special_symmetry.PDB_model_num   1 
_pdbx_struct_special_symmetry.auth_asym_id    A 
_pdbx_struct_special_symmetry.auth_comp_id    BA 
_pdbx_struct_special_symmetry.auth_seq_id     1098 
_pdbx_struct_special_symmetry.PDB_ins_code    ? 
_pdbx_struct_special_symmetry.label_asym_id   E 
_pdbx_struct_special_symmetry.label_comp_id   BA 
_pdbx_struct_special_symmetry.label_seq_id    . 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1 "O3'" ? A A 9  ? A A 9  ? 1_555 BA ? D BA . ? A BA 1097 ? 1_555 OP2 ? A A 10 ? A A 10 ? 1_555 44.5  ? 
2 "O3'" ? A A 9  ? A A 9  ? 1_555 BA ? D BA . ? A BA 1097 ? 1_555 OP2 ? A U 64 ? A U 64 ? 1_555 103.8 ? 
3 OP2   ? A A 10 ? A A 10 ? 1_555 BA ? D BA . ? A BA 1097 ? 1_555 OP2 ? A U 64 ? A U 64 ? 1_555 107.2 ? 
4 O6    ? A G 27 ? A G 27 ? 1_555 BA ? B BA . ? A BA 1095 ? 1_555 O6  ? A G 28 ? A G 28 ? 1_555 64.1  ? 
5 "O2'" ? A U 64 ? A U 64 ? 1_555 BA ? C BA . ? A BA 1096 ? 1_555 O2  ? A U 64 ? A U 64 ? 1_555 66.9  ? 
6 "O2'" ? A U 64 ? A U 64 ? 1_555 BA ? C BA . ? A BA 1096 ? 1_555 O4  ? A U 67 ? A U 67 ? 1_555 135.2 ? 
7 O2    ? A U 64 ? A U 64 ? 1_555 BA ? C BA . ? A BA 1096 ? 1_555 O4  ? A U 67 ? A U 67 ? 1_555 122.2 ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2011-09-07 
2 'Structure model' 1 1 2011-09-21 
3 'Structure model' 1 2 2016-09-28 
4 'Structure model' 1 3 2023-12-20 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Structure summary'      
3 4 'Structure model' 'Data collection'        
4 4 'Structure model' 'Database references'    
5 4 'Structure model' 'Derived calculations'   
6 4 'Structure model' Other                    
7 4 'Structure model' 'Refinement description' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom                
2 4 'Structure model' chem_comp_bond                
3 4 'Structure model' database_2                    
4 4 'Structure model' pdbx_database_status          
5 4 'Structure model' pdbx_initial_refinement_model 
6 4 'Structure model' pdbx_struct_conn_angle        
7 4 'Structure model' struct_conn                   
8 4 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_database_2.pdbx_DOI'                        
2  4 'Structure model' '_database_2.pdbx_database_accession'         
3  4 'Structure model' '_pdbx_database_status.status_code_sf'        
4  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
5  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
6  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
7  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
8  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
9  4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'   
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
16 4 'Structure model' '_pdbx_struct_conn_angle.value'               
17 4 'Structure model' '_struct_conn.pdbx_dist_value'                
18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
30 4 'Structure model' '_struct_site.pdbx_auth_asym_id'              
31 4 'Structure model' '_struct_site.pdbx_auth_comp_id'              
32 4 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
REFMAC    refinement       5.5.0109 ? 1 
HKL-2000  'data reduction' .        ? 2 
SCALEPACK 'data scaling'   .        ? 3 
REFMAC    phasing          .        ? 4 
# 
_pdbx_entry_details.entry_id                 2YDH 
_pdbx_entry_details.compound_details         
;ENGINEERED RESIDUE IN CHAIN A, G 18 TO U
ENGINEERED RESIDUE IN CHAIN A, G 19 TO U
ENGINEERED RESIDUE IN CHAIN A, U 34 TO C
ENGINEERED RESIDUE IN CHAIN A, A 94 TO G
;
_pdbx_entry_details.source_details           ? 
_pdbx_entry_details.nonpolymer_details       ? 
_pdbx_entry_details.sequence_details         'MUTATIONS AT RESIDUES 18, 19, 34 AND 94. SEE REMARK 400' 
_pdbx_entry_details.has_ligand_of_interest   ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 P     A G 1 ? ? OP3   A G 1 ? ? 1.488 1.607 -0.119 0.012 N 
2 1 "O5'" A C 8 ? ? "C5'" A C 8 ? ? 1.364 1.420 -0.056 0.009 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 N1    A G 1  ? ? C6    A G 1  ? ? O6    A G 1  ? ? 123.73 119.90 3.83  0.60 N 
2  1 C5    A G 1  ? ? C6    A G 1  ? ? O6    A G 1  ? ? 124.80 128.60 -3.80 0.60 N 
3  1 "C3'" A C 8  ? ? "O3'" A C 8  ? ? P     A A 9  ? ? 128.69 119.70 8.99  1.20 Y 
4  1 "C3'" A A 9  ? ? "O3'" A A 9  ? ? P     A A 10 ? ? 128.07 119.70 8.37  1.20 Y 
5  1 "C3'" A A 33 ? ? "O3'" A A 33 ? ? P     A C 34 ? ? 127.00 119.70 7.30  1.20 Y 
6  1 "O4'" A C 40 ? ? "C1'" A C 40 ? ? N1    A C 40 ? ? 113.74 108.50 5.24  0.70 N 
7  1 "C3'" A G 43 ? ? "C2'" A G 43 ? ? "C1'" A G 43 ? ? 106.49 101.50 4.99  0.80 N 
8  1 C8    A G 50 ? ? N9    A G 50 ? ? C4    A G 50 ? ? 103.85 106.40 -2.55 0.40 N 
9  1 C6    A G 50 ? ? C5    A G 50 ? ? N7    A G 50 ? ? 126.49 130.40 -3.91 0.60 N 
10 1 N1    A G 50 ? ? C6    A G 50 ? ? O6    A G 50 ? ? 124.70 119.90 4.80  0.60 N 
11 1 C5    A G 50 ? ? C6    A G 50 ? ? O6    A G 50 ? ? 124.49 128.60 -4.11 0.60 N 
12 1 "O4'" A U 54 ? ? "C1'" A U 54 ? ? N1    A U 54 ? ? 113.28 108.50 4.78  0.70 N 
13 1 "O5'" A G 58 ? ? "C5'" A G 58 ? ? "C4'" A G 58 ? ? 103.97 109.40 -5.43 0.80 N 
14 1 "O4'" A G 58 ? ? "C1'" A G 58 ? ? N9    A G 58 ? ? 102.33 108.20 -5.87 0.80 N 
15 1 "O4'" A A 61 ? ? "C1'" A A 61 ? ? N9    A A 61 ? ? 113.77 108.50 5.27  0.70 N 
16 1 "C3'" A A 62 ? ? "C2'" A A 62 ? ? "C1'" A A 62 ? ? 106.49 101.50 4.99  0.80 N 
17 1 "O4'" A C 66 ? ? "C1'" A C 66 ? ? N1    A C 66 ? ? 114.41 108.50 5.91  0.70 N 
18 1 "C3'" A G 68 ? ? "O3'" A G 68 ? ? P     A C 69 ? ? 128.09 119.70 8.39  1.20 Y 
19 1 N9    A A 76 ? ? "C1'" A A 76 ? ? "C2'" A A 76 ? ? 122.37 114.00 8.37  1.30 N 
20 1 "O5'" A U 81 ? ? "C5'" A U 81 ? ? "C4'" A U 81 ? ? 104.02 109.40 -5.38 0.80 N 
21 1 "C4'" A U 88 ? ? "C3'" A U 88 ? ? "C2'" A U 88 ? ? 94.63  102.60 -7.97 1.00 N 
22 1 C8    A A 90 ? ? N9    A A 90 ? ? C4    A A 90 ? ? 103.10 105.80 -2.70 0.40 N 
23 1 N9    A A 90 ? ? C4    A A 90 ? ? C5    A A 90 ? ? 108.93 105.80 3.13  0.40 N 
24 1 N7    A G 94 ? ? C8    A G 94 ? ? N9    A G 94 ? ? 116.27 113.10 3.17  0.50 N 
25 1 C8    A G 94 ? ? N9    A G 94 ? ? C4    A G 94 ? ? 103.84 106.40 -2.56 0.40 N 
26 1 N1    A G 94 ? ? C6    A G 94 ? ? O6    A G 94 ? ? 124.18 119.90 4.28  0.60 N 
# 
loop_
_pdbx_unobs_or_zero_occ_atoms.id 
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 
_pdbx_unobs_or_zero_occ_atoms.polymer_flag 
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id 
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id 
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code 
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id 
_pdbx_unobs_or_zero_occ_atoms.label_alt_id 
_pdbx_unobs_or_zero_occ_atoms.label_asym_id 
_pdbx_unobs_or_zero_occ_atoms.label_comp_id 
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 
_pdbx_unobs_or_zero_occ_atoms.label_atom_id 
1 1 Y 0 A A 9 ? N7 ? A A 9 N7 
2 1 Y 0 A A 9 ? C5 ? A A 9 C5 
3 1 Y 0 A A 9 ? C6 ? A A 9 C6 
4 1 Y 0 A A 9 ? N6 ? A A 9 N6 
5 1 Y 0 A A 9 ? N1 ? A A 9 N1 
6 1 Y 0 A A 9 ? C2 ? A A 9 C2 
7 1 Y 0 A A 9 ? N3 ? A A 9 N3 
8 1 Y 0 A A 9 ? C4 ? A A 9 C4 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A   OP3    O  N N 1   
A   P      P  N N 2   
A   OP1    O  N N 3   
A   OP2    O  N N 4   
A   "O5'"  O  N N 5   
A   "C5'"  C  N N 6   
A   "C4'"  C  N R 7   
A   "O4'"  O  N N 8   
A   "C3'"  C  N S 9   
A   "O3'"  O  N N 10  
A   "C2'"  C  N R 11  
A   "O2'"  O  N N 12  
A   "C1'"  C  N R 13  
A   N9     N  Y N 14  
A   C8     C  Y N 15  
A   N7     N  Y N 16  
A   C5     C  Y N 17  
A   C6     C  Y N 18  
A   N6     N  N N 19  
A   N1     N  Y N 20  
A   C2     C  Y N 21  
A   N3     N  Y N 22  
A   C4     C  Y N 23  
A   HOP3   H  N N 24  
A   HOP2   H  N N 25  
A   "H5'"  H  N N 26  
A   "H5''" H  N N 27  
A   "H4'"  H  N N 28  
A   "H3'"  H  N N 29  
A   "HO3'" H  N N 30  
A   "H2'"  H  N N 31  
A   "HO2'" H  N N 32  
A   "H1'"  H  N N 33  
A   H8     H  N N 34  
A   H61    H  N N 35  
A   H62    H  N N 36  
A   H2     H  N N 37  
BA  BA     BA N N 38  
C   OP3    O  N N 39  
C   P      P  N N 40  
C   OP1    O  N N 41  
C   OP2    O  N N 42  
C   "O5'"  O  N N 43  
C   "C5'"  C  N N 44  
C   "C4'"  C  N R 45  
C   "O4'"  O  N N 46  
C   "C3'"  C  N S 47  
C   "O3'"  O  N N 48  
C   "C2'"  C  N R 49  
C   "O2'"  O  N N 50  
C   "C1'"  C  N R 51  
C   N1     N  N N 52  
C   C2     C  N N 53  
C   O2     O  N N 54  
C   N3     N  N N 55  
C   C4     C  N N 56  
C   N4     N  N N 57  
C   C5     C  N N 58  
C   C6     C  N N 59  
C   HOP3   H  N N 60  
C   HOP2   H  N N 61  
C   "H5'"  H  N N 62  
C   "H5''" H  N N 63  
C   "H4'"  H  N N 64  
C   "H3'"  H  N N 65  
C   "HO3'" H  N N 66  
C   "H2'"  H  N N 67  
C   "HO2'" H  N N 68  
C   "H1'"  H  N N 69  
C   H41    H  N N 70  
C   H42    H  N N 71  
C   H5     H  N N 72  
C   H6     H  N N 73  
G   OP3    O  N N 74  
G   P      P  N N 75  
G   OP1    O  N N 76  
G   OP2    O  N N 77  
G   "O5'"  O  N N 78  
G   "C5'"  C  N N 79  
G   "C4'"  C  N R 80  
G   "O4'"  O  N N 81  
G   "C3'"  C  N S 82  
G   "O3'"  O  N N 83  
G   "C2'"  C  N R 84  
G   "O2'"  O  N N 85  
G   "C1'"  C  N R 86  
G   N9     N  Y N 87  
G   C8     C  Y N 88  
G   N7     N  Y N 89  
G   C5     C  Y N 90  
G   C6     C  N N 91  
G   O6     O  N N 92  
G   N1     N  N N 93  
G   C2     C  N N 94  
G   N2     N  N N 95  
G   N3     N  N N 96  
G   C4     C  Y N 97  
G   HOP3   H  N N 98  
G   HOP2   H  N N 99  
G   "H5'"  H  N N 100 
G   "H5''" H  N N 101 
G   "H4'"  H  N N 102 
G   "H3'"  H  N N 103 
G   "HO3'" H  N N 104 
G   "H2'"  H  N N 105 
G   "HO2'" H  N N 106 
G   "H1'"  H  N N 107 
G   H8     H  N N 108 
G   H1     H  N N 109 
G   H21    H  N N 110 
G   H22    H  N N 111 
HOH O      O  N N 112 
HOH H1     H  N N 113 
HOH H2     H  N N 114 
SAM N      N  N N 115 
SAM CA     C  N S 116 
SAM C      C  N N 117 
SAM O      O  N N 118 
SAM OXT    O  N N 119 
SAM CB     C  N N 120 
SAM CG     C  N N 121 
SAM SD     S  N S 122 
SAM CE     C  N N 123 
SAM "C5'"  C  N N 124 
SAM "C4'"  C  N S 125 
SAM "O4'"  O  N N 126 
SAM "C3'"  C  N S 127 
SAM "O3'"  O  N N 128 
SAM "C2'"  C  N R 129 
SAM "O2'"  O  N N 130 
SAM "C1'"  C  N R 131 
SAM N9     N  Y N 132 
SAM C8     C  Y N 133 
SAM N7     N  Y N 134 
SAM C5     C  Y N 135 
SAM C6     C  Y N 136 
SAM N6     N  N N 137 
SAM N1     N  Y N 138 
SAM C2     C  Y N 139 
SAM N3     N  Y N 140 
SAM C4     C  Y N 141 
SAM HN1    H  N N 142 
SAM HN2    H  N N 143 
SAM HA     H  N N 144 
SAM HB1    H  N N 145 
SAM HB2    H  N N 146 
SAM HG1    H  N N 147 
SAM HG2    H  N N 148 
SAM HE1    H  N N 149 
SAM HE2    H  N N 150 
SAM HE3    H  N N 151 
SAM "H5'1" H  N N 152 
SAM "H5'2" H  N N 153 
SAM "H4'"  H  N N 154 
SAM "H3'"  H  N N 155 
SAM "HO3'" H  N N 156 
SAM "H2'"  H  N N 157 
SAM "HO2'" H  N N 158 
SAM "H1'"  H  N N 159 
SAM H8     H  N N 160 
SAM HN61   H  N N 161 
SAM HN62   H  N N 162 
SAM H2     H  N N 163 
U   OP3    O  N N 164 
U   P      P  N N 165 
U   OP1    O  N N 166 
U   OP2    O  N N 167 
U   "O5'"  O  N N 168 
U   "C5'"  C  N N 169 
U   "C4'"  C  N R 170 
U   "O4'"  O  N N 171 
U   "C3'"  C  N S 172 
U   "O3'"  O  N N 173 
U   "C2'"  C  N R 174 
U   "O2'"  O  N N 175 
U   "C1'"  C  N R 176 
U   N1     N  N N 177 
U   C2     C  N N 178 
U   O2     O  N N 179 
U   N3     N  N N 180 
U   C4     C  N N 181 
U   O4     O  N N 182 
U   C5     C  N N 183 
U   C6     C  N N 184 
U   HOP3   H  N N 185 
U   HOP2   H  N N 186 
U   "H5'"  H  N N 187 
U   "H5''" H  N N 188 
U   "H4'"  H  N N 189 
U   "H3'"  H  N N 190 
U   "HO3'" H  N N 191 
U   "H2'"  H  N N 192 
U   "HO2'" H  N N 193 
U   "H1'"  H  N N 194 
U   H3     H  N N 195 
U   H5     H  N N 196 
U   H6     H  N N 197 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A   OP3   P      sing N N 1   
A   OP3   HOP3   sing N N 2   
A   P     OP1    doub N N 3   
A   P     OP2    sing N N 4   
A   P     "O5'"  sing N N 5   
A   OP2   HOP2   sing N N 6   
A   "O5'" "C5'"  sing N N 7   
A   "C5'" "C4'"  sing N N 8   
A   "C5'" "H5'"  sing N N 9   
A   "C5'" "H5''" sing N N 10  
A   "C4'" "O4'"  sing N N 11  
A   "C4'" "C3'"  sing N N 12  
A   "C4'" "H4'"  sing N N 13  
A   "O4'" "C1'"  sing N N 14  
A   "C3'" "O3'"  sing N N 15  
A   "C3'" "C2'"  sing N N 16  
A   "C3'" "H3'"  sing N N 17  
A   "O3'" "HO3'" sing N N 18  
A   "C2'" "O2'"  sing N N 19  
A   "C2'" "C1'"  sing N N 20  
A   "C2'" "H2'"  sing N N 21  
A   "O2'" "HO2'" sing N N 22  
A   "C1'" N9     sing N N 23  
A   "C1'" "H1'"  sing N N 24  
A   N9    C8     sing Y N 25  
A   N9    C4     sing Y N 26  
A   C8    N7     doub Y N 27  
A   C8    H8     sing N N 28  
A   N7    C5     sing Y N 29  
A   C5    C6     sing Y N 30  
A   C5    C4     doub Y N 31  
A   C6    N6     sing N N 32  
A   C6    N1     doub Y N 33  
A   N6    H61    sing N N 34  
A   N6    H62    sing N N 35  
A   N1    C2     sing Y N 36  
A   C2    N3     doub Y N 37  
A   C2    H2     sing N N 38  
A   N3    C4     sing Y N 39  
C   OP3   P      sing N N 40  
C   OP3   HOP3   sing N N 41  
C   P     OP1    doub N N 42  
C   P     OP2    sing N N 43  
C   P     "O5'"  sing N N 44  
C   OP2   HOP2   sing N N 45  
C   "O5'" "C5'"  sing N N 46  
C   "C5'" "C4'"  sing N N 47  
C   "C5'" "H5'"  sing N N 48  
C   "C5'" "H5''" sing N N 49  
C   "C4'" "O4'"  sing N N 50  
C   "C4'" "C3'"  sing N N 51  
C   "C4'" "H4'"  sing N N 52  
C   "O4'" "C1'"  sing N N 53  
C   "C3'" "O3'"  sing N N 54  
C   "C3'" "C2'"  sing N N 55  
C   "C3'" "H3'"  sing N N 56  
C   "O3'" "HO3'" sing N N 57  
C   "C2'" "O2'"  sing N N 58  
C   "C2'" "C1'"  sing N N 59  
C   "C2'" "H2'"  sing N N 60  
C   "O2'" "HO2'" sing N N 61  
C   "C1'" N1     sing N N 62  
C   "C1'" "H1'"  sing N N 63  
C   N1    C2     sing N N 64  
C   N1    C6     sing N N 65  
C   C2    O2     doub N N 66  
C   C2    N3     sing N N 67  
C   N3    C4     doub N N 68  
C   C4    N4     sing N N 69  
C   C4    C5     sing N N 70  
C   N4    H41    sing N N 71  
C   N4    H42    sing N N 72  
C   C5    C6     doub N N 73  
C   C5    H5     sing N N 74  
C   C6    H6     sing N N 75  
G   OP3   P      sing N N 76  
G   OP3   HOP3   sing N N 77  
G   P     OP1    doub N N 78  
G   P     OP2    sing N N 79  
G   P     "O5'"  sing N N 80  
G   OP2   HOP2   sing N N 81  
G   "O5'" "C5'"  sing N N 82  
G   "C5'" "C4'"  sing N N 83  
G   "C5'" "H5'"  sing N N 84  
G   "C5'" "H5''" sing N N 85  
G   "C4'" "O4'"  sing N N 86  
G   "C4'" "C3'"  sing N N 87  
G   "C4'" "H4'"  sing N N 88  
G   "O4'" "C1'"  sing N N 89  
G   "C3'" "O3'"  sing N N 90  
G   "C3'" "C2'"  sing N N 91  
G   "C3'" "H3'"  sing N N 92  
G   "O3'" "HO3'" sing N N 93  
G   "C2'" "O2'"  sing N N 94  
G   "C2'" "C1'"  sing N N 95  
G   "C2'" "H2'"  sing N N 96  
G   "O2'" "HO2'" sing N N 97  
G   "C1'" N9     sing N N 98  
G   "C1'" "H1'"  sing N N 99  
G   N9    C8     sing Y N 100 
G   N9    C4     sing Y N 101 
G   C8    N7     doub Y N 102 
G   C8    H8     sing N N 103 
G   N7    C5     sing Y N 104 
G   C5    C6     sing N N 105 
G   C5    C4     doub Y N 106 
G   C6    O6     doub N N 107 
G   C6    N1     sing N N 108 
G   N1    C2     sing N N 109 
G   N1    H1     sing N N 110 
G   C2    N2     sing N N 111 
G   C2    N3     doub N N 112 
G   N2    H21    sing N N 113 
G   N2    H22    sing N N 114 
G   N3    C4     sing N N 115 
HOH O     H1     sing N N 116 
HOH O     H2     sing N N 117 
SAM N     CA     sing N N 118 
SAM N     HN1    sing N N 119 
SAM N     HN2    sing N N 120 
SAM CA    C      sing N N 121 
SAM CA    CB     sing N N 122 
SAM CA    HA     sing N N 123 
SAM C     O      doub N N 124 
SAM C     OXT    sing N N 125 
SAM CB    CG     sing N N 126 
SAM CB    HB1    sing N N 127 
SAM CB    HB2    sing N N 128 
SAM CG    SD     sing N N 129 
SAM CG    HG1    sing N N 130 
SAM CG    HG2    sing N N 131 
SAM SD    CE     sing N N 132 
SAM SD    "C5'"  sing N N 133 
SAM CE    HE1    sing N N 134 
SAM CE    HE2    sing N N 135 
SAM CE    HE3    sing N N 136 
SAM "C5'" "C4'"  sing N N 137 
SAM "C5'" "H5'1" sing N N 138 
SAM "C5'" "H5'2" sing N N 139 
SAM "C4'" "O4'"  sing N N 140 
SAM "C4'" "C3'"  sing N N 141 
SAM "C4'" "H4'"  sing N N 142 
SAM "O4'" "C1'"  sing N N 143 
SAM "C3'" "O3'"  sing N N 144 
SAM "C3'" "C2'"  sing N N 145 
SAM "C3'" "H3'"  sing N N 146 
SAM "O3'" "HO3'" sing N N 147 
SAM "C2'" "O2'"  sing N N 148 
SAM "C2'" "C1'"  sing N N 149 
SAM "C2'" "H2'"  sing N N 150 
SAM "O2'" "HO2'" sing N N 151 
SAM "C1'" N9     sing N N 152 
SAM "C1'" "H1'"  sing N N 153 
SAM N9    C8     sing Y N 154 
SAM N9    C4     sing Y N 155 
SAM C8    N7     doub Y N 156 
SAM C8    H8     sing N N 157 
SAM N7    C5     sing Y N 158 
SAM C5    C6     sing Y N 159 
SAM C5    C4     doub Y N 160 
SAM C6    N6     sing N N 161 
SAM C6    N1     doub Y N 162 
SAM N6    HN61   sing N N 163 
SAM N6    HN62   sing N N 164 
SAM N1    C2     sing Y N 165 
SAM C2    N3     doub Y N 166 
SAM C2    H2     sing N N 167 
SAM N3    C4     sing Y N 168 
U   OP3   P      sing N N 169 
U   OP3   HOP3   sing N N 170 
U   P     OP1    doub N N 171 
U   P     OP2    sing N N 172 
U   P     "O5'"  sing N N 173 
U   OP2   HOP2   sing N N 174 
U   "O5'" "C5'"  sing N N 175 
U   "C5'" "C4'"  sing N N 176 
U   "C5'" "H5'"  sing N N 177 
U   "C5'" "H5''" sing N N 178 
U   "C4'" "O4'"  sing N N 179 
U   "C4'" "C3'"  sing N N 180 
U   "C4'" "H4'"  sing N N 181 
U   "O4'" "C1'"  sing N N 182 
U   "C3'" "O3'"  sing N N 183 
U   "C3'" "C2'"  sing N N 184 
U   "C3'" "H3'"  sing N N 185 
U   "O3'" "HO3'" sing N N 186 
U   "C2'" "O2'"  sing N N 187 
U   "C2'" "C1'"  sing N N 188 
U   "C2'" "H2'"  sing N N 189 
U   "O2'" "HO2'" sing N N 190 
U   "C1'" N1     sing N N 191 
U   "C1'" "H1'"  sing N N 192 
U   N1    C2     sing N N 193 
U   N1    C6     sing N N 194 
U   C2    O2     doub N N 195 
U   C2    N3     sing N N 196 
U   N3    C4     sing N N 197 
U   N3    H3     sing N N 198 
U   C4    O4     doub N N 199 
U   C4    C5     sing N N 200 
U   C5    C6     doub N N 201 
U   C5    H5     sing N N 202 
U   C6    H6     sing N N 203 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
2YDH 'double helix'         
2YDH 'a-form double helix'  
2YDH 'hairpin loop'         
2YDH tetraloop              
2YDH 'mismatched base pair' 
2YDH 'triple helix'         
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G 1  1_555 A C 93 1_555 0.366  0.089  -0.220 -1.184  -9.631  -0.103  1  A_G1:C93_A  A 1  ? A 93 ? 19 1 
1 A G 2  1_555 A C 92 1_555 -0.442 -0.522 -0.218 -3.296  -14.979 -1.714  2  A_G2:C92_A  A 2  ? A 92 ? 19 1 
1 A C 3  1_555 A G 91 1_555 -0.304 -0.501 0.174  -2.297  -14.594 -4.844  3  A_C3:G91_A  A 3  ? A 91 ? 19 1 
1 A U 4  1_555 A A 90 1_555 -0.329 -0.460 -0.262 -6.582  -16.264 -0.167  4  A_U4:A90_A  A 4  ? A 90 ? 20 1 
1 A U 5  1_555 A G 89 1_555 1.895  -0.843 -0.088 1.179   -10.547 -4.094  5  A_U5:G89_A  A 5  ? A 89 ? 28 1 
1 A A 6  1_555 A U 88 1_555 0.028  -0.304 0.213  13.132  -11.242 -0.931  6  A_A6:U88_A  A 6  ? A 88 ? 20 1 
1 A U 7  1_555 A A 87 1_555 -0.472 -0.466 -0.264 -6.291  -17.422 3.021   7  A_U7:A87_A  A 7  ? A 87 ? 20 1 
1 A C 8  1_555 A G 86 1_555 -0.224 -0.133 0.225  7.435   -8.870  -5.413  8  A_C8:G86_A  A 8  ? A 86 ? 19 1 
1 A U 64 1_555 A A 85 1_555 0.043  -0.215 0.001  -2.510  -7.112  -4.556  9  A_U64:A85_A A 64 ? A 85 ? 20 1 
1 A G 35 1_555 A A 20 1_555 6.244  -3.747 -0.001 13.528  35.573  9.333   10 A_G35:A20_A A 35 ? A 20 ? 11 9 
1 A A 36 1_555 A U 19 1_555 -6.664 -4.561 0.273  -18.223 -3.775  -11.167 11 A_A36:U19_A A 36 ? A 19 ? ?  ? 
1 A A 37 1_555 A U 18 1_555 -6.021 -1.704 0.632  12.917  -11.432 10.842  12 A_A37:U18_A A 37 ? A 18 ? ?  ? 
1 A A 38 1_555 A U 17 1_555 -0.335 0.131  0.828  12.763  0.093   8.166   13 A_A38:U17_A A 38 ? A 17 ? 20 1 
1 A C 39 1_555 A G 16 1_555 -0.466 0.059  -0.578 9.583   -11.428 -12.961 14 A_C39:G16_A A 39 ? A 16 ? 19 1 
1 A C 40 1_555 A G 15 1_555 0.046  0.090  -0.214 10.623  -6.274  6.011   15 A_C40:G15_A A 40 ? A 15 ? 19 1 
1 A C 41 1_555 A G 13 1_555 0.310  0.490  -1.033 22.923  -5.247  3.397   16 A_C41:G13_A A 41 ? A 13 ? 19 1 
1 A G 42 1_555 A C 60 1_555 -0.866 0.068  -0.467 -4.434  -1.835  2.210   17 A_G42:C60_A A 42 ? A 60 ? 19 1 
1 A G 43 1_555 A C 59 1_555 -0.127 -0.129 -0.922 -16.951 -13.978 6.727   18 A_G43:C59_A A 43 ? A 59 ? 19 1 
1 A C 44 1_555 A G 58 1_555 -0.107 -0.165 0.906  -27.030 -3.279  -8.739  19 A_C44:G58_A A 44 ? A 58 ? 19 1 
1 A G 21 1_555 A C 31 1_555 -0.107 -0.359 0.062  -13.752 -6.192  -3.114  20 A_G21:C31_A A 21 ? A 31 ? 19 1 
1 A G 22 1_555 A C 30 1_555 0.265  0.274  -0.273 -15.026 0.228   3.087   21 A_G22:C30_A A 22 ? A 30 ? 19 1 
1 A G 23 1_555 A C 29 1_555 0.717  -0.061 0.763  2.641   -0.030  -0.918  22 A_G23:C29_A A 23 ? A 29 ? 19 1 
1 A C 65 1_555 A G 28 1_555 -0.745 -0.337 0.879  5.441   -10.107 -0.578  23 A_C65:G28_A A 65 ? A 28 ? 19 1 
1 A C 66 1_555 A G 27 1_555 0.258  -0.415 0.419  -2.685  -19.845 3.495   24 A_C66:G27_A A 66 ? A 27 ? 19 1 
1 A U 67 1_555 A U 26 1_555 2.155  -1.938 1.312  -12.284 -15.814 7.946   25 A_U67:U26_A A 67 ? A 26 ? 16 1 
1 A G 68 1_555 A C 25 1_555 -0.321 0.466  0.077  -29.855 -43.054 15.914  26 A_G68:C25_A A 68 ? A 25 ? ?  1 
1 A C 47 1_555 A G 56 1_555 0.360  -0.303 -0.293 10.772  -7.758  -3.295  27 A_C47:G56_A A 47 ? A 56 ? 19 1 
1 A C 48 1_555 A G 55 1_555 0.681  -0.392 -0.472 12.527  -9.590  -0.454  28 A_C48:G55_A A 48 ? A 55 ? 19 1 
1 A A 49 1_555 A U 54 1_555 0.683  -0.211 -0.230 7.340   -9.766  -5.302  29 A_A49:U54_A A 49 ? A 54 ? 20 1 
1 A C 69 1_555 A G 82 1_555 0.154  0.076  0.955  -18.385 0.344   6.494   30 A_C69:G82_A A 69 ? A 82 ? 19 1 
1 A A 70 1_555 A U 81 1_555 -0.485 -0.001 0.070  -3.156  -14.381 -0.225  31 A_A70:U81_A A 70 ? A 81 ? 20 1 
1 A G 71 1_555 A U 80 1_555 -1.280 -0.265 0.391  -2.895  -11.870 -5.471  32 A_G71:U80_A A 71 ? A 80 ? 28 1 
1 A C 72 1_555 A G 79 1_555 0.404  -0.183 0.046  0.953   -11.912 -0.191  33 A_C72:G79_A A 72 ? A 79 ? 19 1 
1 A G 73 1_555 A C 78 1_555 -0.872 -0.291 0.114  4.238   -0.962  3.990   34 A_G73:C78_A A 73 ? A 78 ? 19 1 
1 A G 74 1_555 A A 77 1_555 7.171  -5.925 1.176  11.852  1.916   -13.384 35 A_G74:A77_A A 74 ? A 77 ? ?  ? 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G 1  1_555 A C 93 1_555 A G 2  1_555 A C 92 1_555 -0.453 -1.743 3.351 -3.972  8.357  36.231 -3.797 0.197   2.923 13.175 6.263 
37.355  1  AA_G1G2:C92C93_AA   A 1  ? A 93 ? A 2  ? A 92 ? 
1 A G 2  1_555 A C 92 1_555 A C 3  1_555 A G 91 1_555 -0.824 -1.903 3.246 -5.453  -0.724 31.702 -3.303 0.492   3.378 -1.313 9.889 
32.164  2  AA_G2C3:G91C92_AA   A 2  ? A 92 ? A 3  ? A 91 ? 
1 A C 3  1_555 A G 91 1_555 A U 4  1_555 A A 90 1_555 0.045  -1.638 3.352 2.875   11.753 30.295 -4.840 0.390   2.550 21.444 -5.245 
32.569  3  AA_C3U4:A90G91_AA   A 3  ? A 91 ? A 4  ? A 90 ? 
1 A U 4  1_555 A A 90 1_555 A U 5  1_555 A G 89 1_555 0.066  -0.906 3.140 0.352   10.324 39.605 -2.348 -0.059  2.828 14.931 -0.510 
40.877  4  AA_U4U5:G89A90_AA   A 4  ? A 90 ? A 5  ? A 89 ? 
1 A U 5  1_555 A G 89 1_555 A A 6  1_555 A U 88 1_555 -0.273 -1.494 2.866 0.669   10.426 24.467 -5.404 0.733   2.059 23.290 -1.494 
26.573  5  AA_U5A6:U88G89_AA   A 5  ? A 89 ? A 6  ? A 88 ? 
1 A A 6  1_555 A U 88 1_555 A U 7  1_555 A A 87 1_555 0.176  -1.263 3.967 3.286   17.061 30.135 -5.062 0.271   2.869 29.897 -5.758 
34.685  6  AA_A6U7:A87U88_AA   A 6  ? A 88 ? A 7  ? A 87 ? 
1 A U 7  1_555 A A 87 1_555 A C 8  1_555 A G 86 1_555 0.080  -1.225 3.093 -1.987  2.715  31.213 -2.738 -0.494  2.968 5.027  3.679 
31.389  7  AA_U7C8:G86A87_AA   A 7  ? A 87 ? A 8  ? A 86 ? 
1 A C 8  1_555 A G 86 1_555 A U 64 1_555 A A 85 1_555 -0.794 -2.081 3.363 -0.112  8.005  40.642 -3.775 1.112   2.922 11.392 0.160 
41.390  8  AA_C8U64:A85G86_AA  A 8  ? A 86 ? A 64 ? A 85 ? 
1 A G 35 1_555 A A 20 1_555 A A 36 1_555 A U 19 1_555 -1.275 -1.402 4.454 -14.259 -8.812 -8.241 9.150  -11.743 0.340 33.647 
-54.443 -18.665 9  AA_G35A36:U19A20_AA A 35 ? A 20 ? A 36 ? A 19 ? 
1 A A 36 1_555 A U 19 1_555 A A 37 1_555 A U 18 1_555 0.418  -0.284 2.431 -12.431 4.099  39.080 -0.726 -1.568  2.166 5.929  17.981 
41.133  10 AA_A36A37:U18U19_AA A 36 ? A 19 ? A 37 ? A 18 ? 
1 A A 37 1_555 A U 18 1_555 A A 38 1_555 A U 17 1_555 -0.379 -0.986 3.317 -9.973  1.774  53.121 -1.198 -0.212  3.301 1.963  11.038 
54.009  11 AA_A37A38:U17U18_AA A 37 ? A 18 ? A 38 ? A 17 ? 
1 A A 38 1_555 A U 17 1_555 A C 39 1_555 A G 16 1_555 -0.955 -1.799 3.338 9.846   2.190  34.450 -3.226 2.915   2.851 3.603  
-16.200 35.853  12 AA_A38C39:G16U17_AA A 38 ? A 17 ? A 39 ? A 16 ? 
1 A C 39 1_555 A G 16 1_555 A C 40 1_555 A G 15 1_555 1.021  -2.366 3.049 1.314   16.044 31.770 -5.696 -1.525  1.731 27.232 -2.230 
35.522  13 AA_C39C40:G15G16_AA A 39 ? A 16 ? A 40 ? A 15 ? 
1 A C 40 1_555 A G 15 1_555 A C 41 1_555 A G 13 1_555 1.484  -1.146 3.044 3.449   -0.029 43.167 -1.551 -1.693  3.148 -0.040 -4.680 
43.298  14 AA_C40C41:G13G15_AA A 40 ? A 15 ? A 41 ? A 13 ? 
1 A C 41 1_555 A G 13 1_555 A G 42 1_555 A C 60 1_555 2.673  -1.452 3.741 -5.077  18.793 45.723 -3.166 -3.580  2.691 22.998 6.213 
49.489  15 AA_C41G42:C60G13_AA A 41 ? A 13 ? A 42 ? A 60 ? 
1 A G 42 1_555 A C 60 1_555 A G 43 1_555 A C 59 1_555 0.388  -1.726 3.863 -2.840  9.097  36.506 -3.987 -1.011  3.315 14.225 4.442 
37.689  16 AA_G42G43:C59C60_AA A 42 ? A 60 ? A 43 ? A 59 ? 
1 A G 43 1_555 A C 59 1_555 A C 44 1_555 A G 58 1_555 -1.112 -1.074 3.502 -15.003 -0.140 39.188 -1.487 -0.228  3.674 -0.200 21.437 
41.857  17 AA_G43C44:G58C59_AA A 43 ? A 59 ? A 44 ? A 58 ? 
1 A G 21 1_555 A C 31 1_555 A G 22 1_555 A C 30 1_555 0.248  -2.624 3.229 4.501   1.511  30.752 -5.174 0.376   3.103 2.828  -8.424 
31.108  18 AA_G21G22:C30C31_AA A 21 ? A 31 ? A 22 ? A 30 ? 
1 A G 22 1_555 A C 30 1_555 A G 23 1_555 A C 29 1_555 -0.431 -2.398 2.746 -5.283  -0.063 27.075 -5.017 -0.195  2.784 -0.133 11.149 
27.576  19 AA_G22G23:C29C30_AA A 22 ? A 30 ? A 23 ? A 29 ? 
1 A G 23 1_555 A C 29 1_555 A C 65 1_555 A G 28 1_555 -2.739 -0.861 2.953 -7.705  -5.027 45.771 -0.673 2.825   3.417 -6.387 9.790 
46.638  20 AA_G23C65:G28C29_AA A 23 ? A 29 ? A 65 ? A 28 ? 
1 A C 65 1_555 A G 28 1_555 A C 66 1_555 A G 27 1_555 -0.468 -2.056 3.240 1.249   2.425  32.287 -4.097 1.052   3.062 4.352  -2.241 
32.399  21 AA_C65C66:G27G28_AA A 65 ? A 28 ? A 66 ? A 27 ? 
1 A C 66 1_555 A G 27 1_555 A U 67 1_555 A U 26 1_555 0.614  -0.919 3.448 -4.784  6.969  43.961 -1.859 -1.254  3.194 9.208  6.321 
44.727  22 AA_C66U67:U26G27_AA A 66 ? A 27 ? A 67 ? A 26 ? 
1 A U 67 1_555 A U 26 1_555 A G 68 1_555 A C 25 1_555 0.171  -0.684 3.180 22.073  15.614 39.242 -2.075 1.517   2.519 20.560 
-29.065 47.350  23 AA_U67G68:C25U26_AA A 67 ? A 26 ? A 68 ? A 25 ? 
1 A C 47 1_555 A G 56 1_555 A C 48 1_555 A G 55 1_555 -0.094 -1.668 3.299 3.670   6.019  35.618 -3.493 0.648   2.963 9.722  -5.929 
36.287  24 AA_C47C48:G55G56_AA A 47 ? A 56 ? A 48 ? A 55 ? 
1 A C 48 1_555 A G 55 1_555 A A 49 1_555 A U 54 1_555 0.233  -1.702 3.757 3.160   4.028  28.082 -4.477 0.330   3.488 8.215  -6.444 
28.536  25 AA_C48A49:U54G55_AA A 48 ? A 55 ? A 49 ? A 54 ? 
1 A C 69 1_555 A G 82 1_555 A A 70 1_555 A U 81 1_555 -0.300 -1.826 2.496 5.830   5.658  24.986 -5.076 1.750   1.925 12.658 
-13.042 26.254  26 AA_C69A70:U81G82_AA A 69 ? A 82 ? A 70 ? A 81 ? 
1 A A 70 1_555 A U 81 1_555 A G 71 1_555 A U 80 1_555 -0.499 -1.665 3.330 -9.089  1.191  30.288 -3.283 -0.821  3.273 2.217  16.915 
31.614  27 AA_A70G71:U80U81_AA A 70 ? A 81 ? A 71 ? A 80 ? 
1 A G 71 1_555 A U 80 1_555 A C 72 1_555 A G 79 1_555 -0.109 -1.378 2.993 1.174   5.496  43.043 -2.338 0.249   2.802 7.453  -1.591 
43.391  28 AA_G71C72:G79U80_AA A 71 ? A 80 ? A 72 ? A 79 ? 
1 A C 72 1_555 A G 79 1_555 A G 73 1_555 A C 78 1_555 0.283  -2.310 3.297 1.218   3.922  19.195 -8.563 -0.276  2.785 11.590 -3.599 
19.625  29 AA_C72G73:C78G79_AA A 72 ? A 79 ? A 73 ? A 78 ? 
1 A G 73 1_555 A C 78 1_555 A G 74 1_555 A A 77 1_555 -1.640 -1.130 3.017 1.891   18.829 60.998 -1.793 1.629   2.560 18.088 -1.817 
63.595  30 AA_G73G74:A77C78_AA A 73 ? A 78 ? A 74 ? A 77 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'BARIUM ION'         BA  
3 S-ADENOSYLMETHIONINE SAM 
4 water                HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   3GX5 
_pdbx_initial_refinement_model.details          'PDB ENTRY 3GX5' 
#