HEADER HYDROLASE 24-MAR-11 2YDT TITLE STRUCTURE OF THE ALPHA-L-ARABINOFURANOSIDASE ARB93A FROM FUSARIUM TITLE 2 GRAMINEARUM IN COMPLEXE WITH AN IMINOSUGAR INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXO-1,5-ALPHA-L-ARABINOFURANOBIOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-L-ARABINOFURANOSIDASE; COMPND 5 EC: 3.2.1.55; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIBBERELLA ZEAE; SOURCE 3 ORGANISM_TAXID: 5518; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET30A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.D.GODDARD-BORGER,R.CARAPITO,J.M.JELTSCH,V.PHALIP,R.V.STICK,A.VARROT REVDAT 4 20-DEC-23 2YDT 1 HETSYN LINK REVDAT 3 29-JUL-20 2YDT 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 16-NOV-11 2YDT 1 JRNL REMARK VERSN REVDAT 1 13-JUL-11 2YDT 0 JRNL AUTH E.D.GODDARD-BORGER,R.CARAPITO,J.JELTSCH,V.PHALIP,R.V.STICK, JRNL AUTH 2 A.VARROT JRNL TITL ALPHA-L-ARABINOFURANOSYLATED PYRROLIDINES AS ARABINANASE JRNL TITL 2 INHIBITORS. JRNL REF CHEM.COMMUN.(CAMB.) V. 47 9684 2011 JRNL REFN ISSN 1359-7345 JRNL PMID 21773614 JRNL DOI 10.1039/C1CC13675E REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2656 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 524 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.188 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3063 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2064 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4200 ; 1.604 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5060 ; 0.937 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 7.279 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;35.881 ;24.419 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;12.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.312 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 443 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3400 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 600 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1854 ; 0.840 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 732 ; 0.258 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3027 ; 1.407 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1209 ; 2.141 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1171 ; 3.356 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2W5N REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 38% PEG 550MME, 100 MM HEPES PH 7.5, REMARK 280 100 MM MNSO4. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.71750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.71750 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.01900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.71750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.00950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.71750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.02850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.71750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.02850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.71750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.00950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 52.71750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.71750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.01900 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.71750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.71750 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.01900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.71750 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 105.02850 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.71750 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 35.00950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.71750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 35.00950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.71750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 105.02850 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.71750 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.71750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.01900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A1509 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2221 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2294 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2391 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 15 REMARK 465 MET A 16 REMARK 465 LYS A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 GLN A 20 REMARK 465 LYS A 21 REMARK 465 SER A 381 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 41 -56.54 85.33 REMARK 500 TYR A 44 61.69 70.18 REMARK 500 VAL A 150 -60.16 -104.57 REMARK 500 LYS A 177 -121.64 54.63 REMARK 500 MET A 226 64.48 69.31 REMARK 500 SER A 289 67.03 30.36 REMARK 500 ASP A 347 89.86 -151.36 REMARK 500 MET A 379 53.58 -92.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2036 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2135 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2157 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2196 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A2252 DISTANCE = 6.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1507 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 32 OD1 REMARK 620 2 HOH A2024 O 91.4 REMARK 620 3 HOH A2025 O 92.8 83.6 REMARK 620 4 HOH A2026 O 96.8 93.1 170.0 REMARK 620 5 HOH A2027 O 88.0 176.2 92.7 90.7 REMARK 620 6 HOH A2499 O 176.9 91.4 86.4 84.2 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1510 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 32 OD2 REMARK 620 2 HOH A2018 O 79.6 REMARK 620 3 HOH A2028 O 83.7 137.5 REMARK 620 4 HOH A2522 O 169.8 110.1 90.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1511 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 313 OE2 REMARK 620 2 ASP A 330 OD1 107.0 REMARK 620 3 HOH A2460 O 84.8 98.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1508 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 345 OE1 REMARK 620 2 HOH A2088 O 95.1 REMARK 620 3 HOH A2089 O 76.8 85.5 REMARK 620 4 HOH A2521 O 171.6 91.6 98.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1509 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 377 OE2 REMARK 620 2 GLU A 377 OE2 91.0 REMARK 620 3 HOH A2005 O 85.3 90.6 REMARK 620 4 HOH A2005 O 94.1 84.4 175.0 REMARK 620 5 HOH A2511 O 70.0 155.1 103.2 81.2 REMARK 620 6 HOH A2512 O 164.6 104.3 95.1 86.8 95.1 REMARK 620 7 HOH A2512 O 109.7 158.9 86.9 97.9 44.6 55.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YDP RELATED DB: PDB REMARK 900 STRUCTURE OF THE E242A MUTANT OF THE ALPHA-L- ARABINOFURANOSIDASE REMARK 900 ARB93A FROM FUSARIUM GRAMINEARUM IN COMPLEXE WITH AN IMINOSUGAR REMARK 900 INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITED SEQUENCE IS FROM THE MATURE PROTEIN. OUR REMARK 999 NUMBERING INCLUDE THE PEPTIDE SIGNAL AND IS SWITCHED BY 16 REMARK 999 AMINO ACID. DBREF 2YDT A 17 381 UNP B8ZY56 B8ZY56_GIBZE 1 365 DBREF 2YDT A 17 381 UNP B8ZY56 B8ZY56_GIBZA 1 365 SEQADV 2YDT ALA A 15 UNP B8ZY56 EXPRESSION TAG SEQADV 2YDT MET A 16 UNP B8ZY56 EXPRESSION TAG SEQRES 1 A 367 ALA MET LYS PRO ALA GLN LYS GLY LYS THR PHE SER ASN SEQRES 2 A 367 VAL GLU ILE PHE ASP PRO PRO THR ASN TYR ARG ASP PRO SEQRES 3 A 367 GLN VAL LEU TYR ALA ARG PRO LEU GLU LEU SER ASP GLY SEQRES 4 A 367 THR LEU LEU GLY THR TRP GLU ASN TYR SER PRO GLU PRO SEQRES 5 A 367 PRO ASN VAL TRP PHE PRO ILE VAL LYS SER LYS ASP GLY SEQRES 6 A 367 GLY LYS THR TRP LYS GLU ILE SER LYS VAL LYS ASP THR SEQRES 7 A 367 GLN ASN ASN TRP GLY LEU ARG TYR GLN PRO GLN LEU TYR SEQRES 8 A 367 GLU LEU PRO ARG ALA PHE GLY LYS TYR PRO LYS GLY THR SEQRES 9 A 367 VAL LEU CYS SER GLY SER SER ILE PRO SER ASP LEU SER SEQRES 10 A 367 GLU THR LEU ILE GLU VAL TYR ALA SER ARG ASP LYS GLY SEQRES 11 A 367 TYR THR TRP GLU PHE VAL SER HIS VAL ALA LEU GLY GLY SEQRES 12 A 367 GLU ALA LEU PRO ASN PRO GLY LEU THR PRO VAL TRP GLU SEQRES 13 A 367 PRO PHE LEU MET THR TYR LYS GLU LYS LEU ILE LEU TYR SEQRES 14 A 367 TYR SER ASP GLN ARG ASP ASN ALA THR HIS SER GLN LYS SEQRES 15 A 367 LEU VAL HIS GLN THR THR THR ASP LEU LYS LYS TRP SER SEQRES 16 A 367 LYS VAL VAL ASP ASP THR LYS TYR ALA ASN TYR TYR ALA SEQRES 17 A 367 ARG PRO GLY MET PRO THR VAL ALA LYS LEU PRO ASN ASN SEQRES 18 A 367 GLU TYR ILE TYR VAL TYR GLU TYR GLY GLY GLY PRO ASN SEQRES 19 A 367 PRO PRO ALA GLY SER ASP TYR TRP PHE PRO VAL TYR TYR SEQRES 20 A 367 ARG LEU SER LYS ASP PRO GLN LYS PHE LEU ASN LYS ALA SEQRES 21 A 367 HIS HIS GLN ILE VAL SER ASN ASP GLY THR THR PRO ALA SEQRES 22 A 367 GLY SER PRO TYR VAL VAL TRP THR PRO TYR GLY GLY LYS SEQRES 23 A 367 ASN GLY THR ILE VAL VAL SER CYS GLY THR ARG SER GLU SEQRES 24 A 367 ILE PHE THR ASN GLN ALA LEU GLY ASP ALA SER ALA TRP SEQRES 25 A 367 LYS LYS TRP ASP VAL PRO GLN PRO THR ALA TYR THR ARG SEQRES 26 A 367 SER LEU LEU THR PHE GLN LYS ASP PRO ASP LEU LEU MET SEQRES 27 A 367 ILE MET GLY ALA GLY ILE LEU PRO PRO ALA GLY GLY LYS SEQRES 28 A 367 ASN THR VAL SER ALA SER VAL VAL ARG LEU SER GLU VAL SEQRES 29 A 367 MET LYS SER HET EDG A 500 9 HET AHR A 501 9 HET SO4 A1502 5 HET SO4 A1503 5 HET SO4 A1504 5 HET SO4 A1505 5 HET SO4 A1506 5 HET MN A1507 1 HET MN A1508 1 HET MN A1509 1 HET MN A1510 1 HET MN A1511 1 HET ACT A1512 4 HETNAM EDG 1,4-DIDEOXY-1,4-IMINO-L-ARABINITOL HETNAM AHR ALPHA-L-ARABINOFURANOSE HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION HETNAM ACT ACETATE ION HETSYN AHR ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE FORMUL 2 EDG C5 H11 N O3 FORMUL 3 AHR C5 H10 O5 FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 MN 5(MN 2+) FORMUL 14 ACT C2 H3 O2 1- FORMUL 15 HOH *524(H2 O) HELIX 1 1 LEU A 375 MET A 379 1 5 SHEET 1 AA 4 PHE A 25 PHE A 31 0 SHEET 2 AA 4 VAL A 368 ARG A 374 -1 O VAL A 368 N ILE A 30 SHEET 3 AA 4 LEU A 350 GLY A 355 -1 O LEU A 351 N VAL A 373 SHEET 4 AA 4 SER A 340 PHE A 344 -1 O SER A 340 N MET A 354 SHEET 1 AB 4 VAL A 42 GLU A 49 0 SHEET 2 AB 4 LEU A 55 ASN A 61 -1 O LEU A 56 N LEU A 48 SHEET 3 AB 4 PHE A 71 SER A 76 -1 O VAL A 74 N GLY A 57 SHEET 4 AB 4 LYS A 84 VAL A 89 -1 O LYS A 84 N LYS A 75 SHEET 1 AC 4 LEU A 98 GLU A 106 0 SHEET 2 AC 4 VAL A 119 SER A 125 -1 O LEU A 120 N TYR A 105 SHEET 3 AC 4 THR A 133 SER A 140 -1 O LEU A 134 N SER A 125 SHEET 4 AC 4 GLU A 148 GLY A 156 -1 O GLU A 148 N ALA A 139 SHEET 1 AD 4 VAL A 168 TYR A 176 0 SHEET 2 AD 4 LYS A 179 ASP A 186 -1 O LYS A 179 N TYR A 176 SHEET 3 AD 4 LYS A 196 THR A 202 -1 O LYS A 196 N ASP A 186 SHEET 4 AD 4 VAL A 212 THR A 215 -1 O VAL A 212 N HIS A 199 SHEET 1 AE 4 ARG A 223 LYS A 231 0 SHEET 2 AE 4 TYR A 237 GLY A 244 -1 O ILE A 238 N ALA A 230 SHEET 3 AE 4 VAL A 259 SER A 264 -1 O TYR A 260 N TYR A 241 SHEET 4 AE 4 HIS A 276 ILE A 278 -1 O HIS A 276 N TYR A 261 SHEET 1 AF 4 TYR A 291 THR A 295 0 SHEET 2 AF 4 THR A 303 SER A 307 -1 O THR A 303 N THR A 295 SHEET 3 AF 4 ILE A 314 ASN A 317 -1 O PHE A 315 N VAL A 306 SHEET 4 AF 4 TRP A 326 TRP A 329 -1 O LYS A 327 N THR A 316 LINK O5' EDG A 500 C1 AHR A 501 1555 1555 1.43 LINK OD1 ASP A 32 MN MN A1507 1555 1555 2.13 LINK OD2 ASP A 32 MN MN A1510 1555 1555 2.22 LINK OE2 GLU A 313 MN MN A1511 1555 1555 2.35 LINK OD1 ASP A 330 MN MN A1511 1555 1555 2.17 LINK OE1 GLN A 345 MN MN A1508 1555 1555 2.39 LINK OE2 GLU A 377 MN MN A1509 1555 1555 1.99 LINK OE2 GLU A 377 MN MN A1509 16555 1555 2.08 LINK MN MN A1507 O HOH A2024 1555 1555 2.21 LINK MN MN A1507 O HOH A2025 1555 1555 2.28 LINK MN MN A1507 O HOH A2026 1555 1555 2.21 LINK MN MN A1507 O HOH A2027 1555 1555 2.23 LINK MN MN A1507 O HOH A2499 1555 1555 2.23 LINK MN MN A1508 O HOH A2088 1555 1555 2.21 LINK MN MN A1508 O HOH A2089 1555 1555 2.18 LINK MN MN A1508 O HOH A2521 1555 1555 1.85 LINK MN MN A1509 O HOH A2005 1555 1555 2.35 LINK MN MN A1509 O HOH A2005 1555 16555 2.31 LINK MN MN A1509 O HOH A2511 1555 1555 2.73 LINK MN MN A1509 O HOH A2512 1555 16555 2.12 LINK MN MN A1509 O HOH A2512 1555 1555 2.06 LINK MN MN A1510 O HOH A2018 1555 1555 2.25 LINK MN MN A1510 O HOH A2028 1555 1555 2.28 LINK MN MN A1510 O HOH A2522 1555 1555 2.15 LINK MN MN A1511 O HOH A2460 1555 1555 1.71 CISPEP 1 ASP A 39 PRO A 40 0 8.58 CISPEP 2 GLU A 65 PRO A 66 0 -0.95 CISPEP 3 PRO A 66 PRO A 67 0 -0.02 CISPEP 4 PRO A 360 PRO A 361 0 4.31 CRYST1 105.435 105.435 140.038 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009485 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007141 0.00000