data_2YGH
# 
_entry.id   2YGH 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.383 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   2YGH         pdb_00002ygh 10.2210/pdb2ygh/pdb 
PDBE  EBI-48042    ?            ?                   
WWPDB D_1290048042 ?            ?                   
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          2YDH 
_pdbx_database_related.content_type   unspecified 
_pdbx_database_related.details        'CRYSTAL STRUCTURE OF THE SAM-I RIBOSWITCH A94G U34 G18U G19U VARIANT IN COMLEX WITH SAM' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        2YGH 
_pdbx_database_status.deposit_site                    PDBE 
_pdbx_database_status.process_site                    PDBE 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.recvd_initial_deposition_date   2011-04-17 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Schroeder, K.' 1 
'Daldrop, P.'   2 
'Lilley, D.'    3 
# 
_citation.id                        primary 
_citation.title                     'RNA Tertiary Interactions in a Riboswitch Stabilize the Structure of a Kink Turn.' 
_citation.journal_abbrev            Structure 
_citation.journal_volume            19 
_citation.page_first                1233 
_citation.page_last                 ? 
_citation.year                      2011 
_citation.journal_id_ASTM           STRUE6 
_citation.country                   UK 
_citation.journal_id_ISSN           0969-2126 
_citation.journal_id_CSD            2005 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   21893284 
_citation.pdbx_database_id_DOI      10.1016/J.STR.2011.07.003 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Schroeder, K.T.' 1 ? 
primary 'Daldrop, P.'     2 ? 
primary 'Lilley, D.M.J.'  3 ? 
# 
_cell.entry_id           2YGH 
_cell.length_a           58.460 
_cell.length_b           58.460 
_cell.length_c           155.260 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         2YGH 
_symmetry.space_group_name_H-M             'P 43 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                96 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 'SAM-I RIBOSWITCH'   30881.543 1  ? ? ? ? 
2 non-polymer syn S-ADENOSYLMETHIONINE 398.437   1  ? ? ? ? 
3 non-polymer syn 'SODIUM ION'         22.990    4  ? ? ? ? 
4 non-polymer syn 'POTASSIUM ION'      39.098    1  ? ? ? ? 
5 water       nat water                18.015    20 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       
;GGCUUAUCAAGAGAGGUGAAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU
UGAAAGAUGAGCCGA
;
_entity_poly.pdbx_seq_one_letter_code_can   
;GGCUUAUCAAGAGAGGUGAAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU
UGAAAGAUGAGCCGA
;
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  G n 
1 2  G n 
1 3  C n 
1 4  U n 
1 5  U n 
1 6  A n 
1 7  U n 
1 8  C n 
1 9  A n 
1 10 A n 
1 11 G n 
1 12 A n 
1 13 G n 
1 14 A n 
1 15 G n 
1 16 G n 
1 17 U n 
1 18 G n 
1 19 A n 
1 20 A n 
1 21 G n 
1 22 G n 
1 23 G n 
1 24 A n 
1 25 C n 
1 26 U n 
1 27 G n 
1 28 G n 
1 29 C n 
1 30 C n 
1 31 C n 
1 32 G n 
1 33 A n 
1 34 C n 
1 35 G n 
1 36 A n 
1 37 A n 
1 38 A n 
1 39 C n 
1 40 C n 
1 41 C n 
1 42 G n 
1 43 G n 
1 44 C n 
1 45 A n 
1 46 A n 
1 47 C n 
1 48 C n 
1 49 A n 
1 50 G n 
1 51 A n 
1 52 A n 
1 53 A n 
1 54 U n 
1 55 G n 
1 56 G n 
1 57 U n 
1 58 G n 
1 59 C n 
1 60 C n 
1 61 A n 
1 62 A n 
1 63 U n 
1 64 U n 
1 65 C n 
1 66 C n 
1 67 U n 
1 68 G n 
1 69 C n 
1 70 A n 
1 71 G n 
1 72 C n 
1 73 G n 
1 74 G n 
1 75 A n 
1 76 A n 
1 77 A n 
1 78 C n 
1 79 G n 
1 80 U n 
1 81 U n 
1 82 G n 
1 83 A n 
1 84 A n 
1 85 A n 
1 86 G n 
1 87 A n 
1 88 U n 
1 89 G n 
1 90 A n 
1 91 G n 
1 92 C n 
1 93 C n 
1 94 G n 
1 95 A n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    'THERMOANAEROBACTER TENGCONGENSIS' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       119072 
_pdbx_entity_src_syn.details                ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    2YGH 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_db_accession          2YGH 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              2YGH 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 94 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             2YGH 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  94 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       94 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
HOH non-polymer   . WATER                        ? 'H2 O'            18.015  
K   non-polymer   . 'POTASSIUM ION'              ? 'K 1'             39.098  
NA  non-polymer   . 'SODIUM ION'                 ? 'Na 1'            22.990  
SAM non-polymer   . S-ADENOSYLMETHIONINE         ? 'C15 H22 N6 O5 S' 398.437 
U   'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O9 P'  324.181 
# 
_exptl.entry_id          2YGH 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.16 
_exptl_crystal.density_percent_sol   46 
_exptl_crystal.description           NONE 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          ? 
_exptl_crystal_grow.temp            ? 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.0 
_exptl_crystal_grow.pdbx_pH_range   ? 
_exptl_crystal_grow.pdbx_details    '10 MM MGCL, 40 MM NA-CACODYLATE PH 7, 80 MM KCL, 16 MM SPERMINE-HCL, 14% (V/V) MPD.' 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   MARRESEARCH 
_diffrn_detector.pdbx_collection_date   2011-04-04 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.974 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'ESRF BEAMLINE BM14' 
_diffrn_source.pdbx_synchrotron_site       ESRF 
_diffrn_source.pdbx_synchrotron_beamline   BM14 
_diffrn_source.pdbx_wavelength             0.974 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
_reflns.entry_id                     2YGH 
_reflns.observed_criterion_sigma_I   2.0 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             51.80 
_reflns.d_resolution_high            2.60 
_reflns.number_obs                   8929 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         100.0 
_reflns.pdbx_Rmerge_I_obs            0.07 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        22.60 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              9.2 
# 
_reflns_shell.pdbx_diffrn_id         1 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.d_res_high             2.60 
_reflns_shell.d_res_low              2.74 
_reflns_shell.percent_possible_all   100.0 
_reflns_shell.Rmerge_I_obs           0.38 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    6.00 
_reflns_shell.pdbx_redundancy        9.5 
# 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.entry_id                                 2YGH 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.ls_number_reflns_obs                     7986 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          . 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             54.71 
_refine.ls_d_res_high                            2.60 
_refine.ls_percent_reflns_obs                    99.91 
_refine.ls_R_factor_obs                          0.20540 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.19975 
_refine.ls_R_factor_R_free                       0.25929 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 10.0 
_refine.ls_number_reflns_R_free                  885 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.934 
_refine.correlation_coeff_Fo_to_Fc_free          0.903 
_refine.B_iso_mean                               28.333 
_refine.aniso_B[1][1]                            0.75 
_refine.aniso_B[2][2]                            0.75 
_refine.aniso_B[3][3]                            -1.51 
_refine.aniso_B[1][2]                            0.00 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.40 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  
'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.' 
_refine.pdbx_starting_model                      'PDB ENTRY 3GX5' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  0.357 
_refine.overall_SU_ML                            0.230 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             11.018 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   2033 
_refine_hist.pdbx_number_atoms_ligand         32 
_refine_hist.number_atoms_solvent             20 
_refine_hist.number_atoms_total               2085 
_refine_hist.d_res_high                       2.60 
_refine_hist.d_res_low                        54.71 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d             0.010 0.021 ? 2304 'X-RAY DIFFRACTION' ? 
r_bond_other_d               ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_angle_refined_deg          1.892 3.000 ? 3591 'X-RAY DIFFRACTION' ? 
r_angle_other_deg            ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_dihedral_angle_1_deg       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_dihedral_angle_2_deg       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_dihedral_angle_3_deg       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_dihedral_angle_4_deg       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_chiral_restr               0.079 0.200 ? 474  'X-RAY DIFFRACTION' ? 
r_gen_planes_refined         0.007 0.020 ? 1009 'X-RAY DIFFRACTION' ? 
r_gen_planes_other           ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_nbd_refined                ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_nbd_other                  ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_nbtor_refined              ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_nbtor_other                ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined        ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_other          ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_metal_ion_refined          ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_metal_ion_other            ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_other         ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined     ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_other       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_refined ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_other   ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_mcbond_it                  0.372 1.500 ? 5    'X-RAY DIFFRACTION' ? 
r_mcbond_other               ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_mcangle_it                 0.909 2.000 ? 7    'X-RAY DIFFRACTION' ? 
r_mcangle_other              ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_scbond_it                  1.319 3.000 ? 2299 'X-RAY DIFFRACTION' ? 
r_scbond_other               ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_scangle_it                 2.043 4.500 ? 3584 'X-RAY DIFFRACTION' ? 
r_scangle_other              ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_long_range_B_refined       ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_long_range_B_other         ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_rigid_bond_restr           ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_sphericity_free            ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
r_sphericity_bonded          ?     ?     ? ?    'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       2.600 
_refine_ls_shell.d_res_low                        2.668 
_refine_ls_shell.number_reflns_R_work             593 
_refine_ls_shell.R_factor_R_work                  0.360 
_refine_ls_shell.percent_reflns_obs               100.00 
_refine_ls_shell.R_factor_R_free                  0.463 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             62 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
# 
_struct.entry_id                  2YGH 
_struct.title                     'SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        2YGH 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            RNA 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 4 ? 
E N N 3 ? 
F N N 3 ? 
G N N 3 ? 
H N N 5 ? 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A A  10 OP2 ? ? ? 1_555 C NA  .  NA ? ? A A  10   A NA  1097 1_555 ? ? ? ? ? ? ?             2.334 ? ? 
metalc2  metalc ? ? A G  13 N7  ? ? ? 1_555 E NA  .  NA ? ? A G  13   A NA  1099 1_555 ? ? ? ? ? ? ?             2.333 ? ? 
metalc3  metalc ? ? A U  64 OP2 ? ? ? 1_555 C NA  .  NA ? ? A U  64   A NA  1097 1_555 ? ? ? ? ? ? ?             2.402 ? ? 
metalc4  metalc ? ? A G  74 N7  ? ? ? 1_555 D K   .  K  ? ? A G  74   A K   1098 1_555 ? ? ? ? ? ? ?             2.905 ? ? 
metalc5  metalc ? ? A G  74 O6  ? ? ? 1_555 D K   .  K  ? ? A G  74   A K   1098 1_555 ? ? ? ? ? ? ?             3.172 ? ? 
metalc6  metalc ? ? C NA .  NA  ? ? ? 1_555 H HOH .  O  ? ? A NA 1097 A HOH 2005 1_555 ? ? ? ? ? ? ?             2.391 ? ? 
metalc7  metalc ? ? F NA .  NA  ? ? ? 1_555 H HOH .  O  ? ? A NA 1100 A HOH 2013 8_554 ? ? ? ? ? ? ?             2.250 ? ? 
metalc8  metalc ? ? F NA .  NA  ? ? ? 1_555 H HOH .  O  ? ? A NA 1100 A HOH 2013 1_555 ? ? ? ? ? ? ?             2.912 ? ? 
metalc9  metalc ? ? F NA .  NA  ? ? ? 1_555 H HOH .  O  ? ? A NA 1100 A HOH 2014 1_555 ? ? ? ? ? ? ?             2.472 ? ? 
metalc10 metalc ? ? G NA .  NA  ? ? ? 1_555 H HOH .  O  ? ? A NA 1101 A HOH 2015 1_555 ? ? ? ? ? ? ?             2.187 ? ? 
metalc11 metalc ? ? G NA .  NA  ? ? ? 1_555 H HOH .  O  ? ? A NA 1101 A HOH 2016 1_555 ? ? ? ? ? ? ?             2.379 ? ? 
hydrog1  hydrog ? ? A G  1  N1  ? ? ? 1_555 A C   93 N3 ? ? A G  1    A C   93   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog2  hydrog ? ? A G  1  N2  ? ? ? 1_555 A C   93 O2 ? ? A G  1    A C   93   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog3  hydrog ? ? A G  1  O6  ? ? ? 1_555 A C   93 N4 ? ? A G  1    A C   93   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog4  hydrog ? ? A G  2  N1  ? ? ? 1_555 A C   92 N3 ? ? A G  2    A C   92   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog5  hydrog ? ? A G  2  N2  ? ? ? 1_555 A C   92 O2 ? ? A G  2    A C   92   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog6  hydrog ? ? A G  2  O6  ? ? ? 1_555 A C   92 N4 ? ? A G  2    A C   92   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog7  hydrog ? ? A C  3  N3  ? ? ? 1_555 A G   91 N1 ? ? A C  3    A G   91   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog8  hydrog ? ? A C  3  N4  ? ? ? 1_555 A G   91 O6 ? ? A C  3    A G   91   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog9  hydrog ? ? A C  3  O2  ? ? ? 1_555 A G   91 N2 ? ? A C  3    A G   91   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog10 hydrog ? ? A U  4  N3  ? ? ? 1_555 A A   90 N1 ? ? A U  4    A A   90   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog11 hydrog ? ? A U  4  O4  ? ? ? 1_555 A A   90 N6 ? ? A U  4    A A   90   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog12 hydrog ? ? A U  5  N3  ? ? ? 1_555 A G   89 O6 ? ? A U  5    A G   89   1_555 ? ? ? ? ? ? TYPE_28_PAIR  ?     ? ? 
hydrog13 hydrog ? ? A U  5  O2  ? ? ? 1_555 A G   89 N1 ? ? A U  5    A G   89   1_555 ? ? ? ? ? ? TYPE_28_PAIR  ?     ? ? 
hydrog14 hydrog ? ? A A  6  N1  ? ? ? 1_555 A U   88 N3 ? ? A A  6    A U   88   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog15 hydrog ? ? A A  6  N6  ? ? ? 1_555 A U   88 O4 ? ? A A  6    A U   88   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog16 hydrog ? ? A U  7  N3  ? ? ? 1_555 A A   87 N1 ? ? A U  7    A A   87   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog17 hydrog ? ? A U  7  O4  ? ? ? 1_555 A A   87 N6 ? ? A U  7    A A   87   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog18 hydrog ? ? A C  8  N3  ? ? ? 1_555 A G   86 N1 ? ? A C  8    A G   86   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog19 hydrog ? ? A C  8  N4  ? ? ? 1_555 A G   86 O6 ? ? A C  8    A G   86   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog20 hydrog ? ? A C  8  O2  ? ? ? 1_555 A G   86 N2 ? ? A C  8    A G   86   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog21 hydrog ? ? A G  11 N2  ? ? ? 1_555 A C   44 O2 ? ? A G  11   A C   44   1_555 ? ? ? ? ? ? 'G-C PAIR'    ?     ? ? 
hydrog22 hydrog ? ? A A  12 N3  ? ? ? 1_555 A G   43 N2 ? ? A A  12   A G   43   1_555 ? ? ? ? ? ? 'A-G MISPAIR' ?     ? ? 
hydrog23 hydrog ? ? A G  13 N1  ? ? ? 1_555 A C   41 N3 ? ? A G  13   A C   41   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog24 hydrog ? ? A G  13 N2  ? ? ? 1_555 A C   41 O2 ? ? A G  13   A C   41   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog25 hydrog ? ? A G  13 O6  ? ? ? 1_555 A C   41 N4 ? ? A G  13   A C   41   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog26 hydrog ? ? A G  15 N1  ? ? ? 1_555 A C   40 N3 ? ? A G  15   A C   40   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog27 hydrog ? ? A G  15 N2  ? ? ? 1_555 A C   40 O2 ? ? A G  15   A C   40   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog28 hydrog ? ? A G  15 O6  ? ? ? 1_555 A C   40 N4 ? ? A G  15   A C   40   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog29 hydrog ? ? A G  16 N1  ? ? ? 1_555 A C   39 N3 ? ? A G  16   A C   39   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog30 hydrog ? ? A G  16 N2  ? ? ? 1_555 A C   39 O2 ? ? A G  16   A C   39   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog31 hydrog ? ? A G  16 O6  ? ? ? 1_555 A C   39 N4 ? ? A G  16   A C   39   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog32 hydrog ? ? A U  17 N3  ? ? ? 1_555 A A   38 N1 ? ? A U  17   A A   38   1_555 ? ? ? ? ? ? 'U-A PAIR'    ?     ? ? 
hydrog33 hydrog ? ? A G  18 N2  ? ? ? 1_555 A A   37 N7 ? ? A G  18   A A   37   1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog34 hydrog ? ? A G  18 N3  ? ? ? 1_555 A A   37 N6 ? ? A G  18   A A   37   1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog35 hydrog ? ? A A  19 N3  ? ? ? 1_555 A A   36 N6 ? ? A A  19   A A   36   1_555 ? ? ? ? ? ? 'A-A MISPAIR' ?     ? ? 
hydrog36 hydrog ? ? A A  20 N6  ? ? ? 1_555 A G   35 N3 ? ? A A  20   A G   35   1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog37 hydrog ? ? A A  20 N7  ? ? ? 1_555 A G   35 N2 ? ? A A  20   A G   35   1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog38 hydrog ? ? A G  21 N1  ? ? ? 1_555 A C   31 N3 ? ? A G  21   A C   31   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog39 hydrog ? ? A G  21 N2  ? ? ? 1_555 A C   31 O2 ? ? A G  21   A C   31   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog40 hydrog ? ? A G  21 O6  ? ? ? 1_555 A C   31 N4 ? ? A G  21   A C   31   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog41 hydrog ? ? A G  22 N1  ? ? ? 1_555 A C   30 N3 ? ? A G  22   A C   30   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog42 hydrog ? ? A G  22 N2  ? ? ? 1_555 A C   30 O2 ? ? A G  22   A C   30   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog43 hydrog ? ? A G  22 O6  ? ? ? 1_555 A C   30 N4 ? ? A G  22   A C   30   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog44 hydrog ? ? A G  23 N1  ? ? ? 1_555 A C   29 N3 ? ? A G  23   A C   29   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog45 hydrog ? ? A G  23 N2  ? ? ? 1_555 A C   29 O2 ? ? A G  23   A C   29   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog46 hydrog ? ? A G  23 O6  ? ? ? 1_555 A C   29 N4 ? ? A G  23   A C   29   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog47 hydrog ? ? A G  23 N2  ? ? ? 1_555 A A   62 N1 ? ? A G  23   A A   62   1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog48 hydrog ? ? A G  23 N3  ? ? ? 1_555 A A   62 N6 ? ? A G  23   A A   62   1_555 ? ? ? ? ? ? TYPE_10_PAIR  ?     ? ? 
hydrog49 hydrog ? ? A A  24 N6  ? ? ? 1_555 A A   85 N3 ? ? A A  24   A A   85   1_555 ? ? ? ? ? ? 'A-A MISPAIR' ?     ? ? 
hydrog50 hydrog ? ? A C  25 N3  ? ? ? 1_555 A G   68 N1 ? ? A C  25   A G   68   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog51 hydrog ? ? A C  25 N4  ? ? ? 1_555 A G   68 O6 ? ? A C  25   A G   68   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog52 hydrog ? ? A C  25 O2  ? ? ? 1_555 A G   68 N2 ? ? A C  25   A G   68   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog53 hydrog ? ? A U  26 N3  ? ? ? 1_555 A U   67 O2 ? ? A U  26   A U   67   1_555 ? ? ? ? ? ? TYPE_16_PAIR  ?     ? ? 
hydrog54 hydrog ? ? A U  26 O4  ? ? ? 1_555 A U   67 N3 ? ? A U  26   A U   67   1_555 ? ? ? ? ? ? TYPE_16_PAIR  ?     ? ? 
hydrog55 hydrog ? ? A G  27 N1  ? ? ? 1_555 A C   66 N3 ? ? A G  27   A C   66   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog56 hydrog ? ? A G  27 N2  ? ? ? 1_555 A C   66 O2 ? ? A G  27   A C   66   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog57 hydrog ? ? A G  27 O6  ? ? ? 1_555 A C   66 N4 ? ? A G  27   A C   66   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog58 hydrog ? ? A G  28 N1  ? ? ? 1_555 A C   65 N3 ? ? A G  28   A C   65   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog59 hydrog ? ? A G  28 N2  ? ? ? 1_555 A C   65 O2 ? ? A G  28   A C   65   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog60 hydrog ? ? A G  28 O6  ? ? ? 1_555 A C   65 N4 ? ? A G  28   A C   65   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog61 hydrog ? ? A C  30 O2  ? ? ? 1_555 A A   61 N6 ? ? A C  30   A A   61   1_555 ? ? ? ? ? ? 'C-A MISPAIR' ?     ? ? 
hydrog62 hydrog ? ? A G  42 N1  ? ? ? 1_555 A C   60 N3 ? ? A G  42   A C   60   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog63 hydrog ? ? A G  42 N2  ? ? ? 1_555 A C   60 O2 ? ? A G  42   A C   60   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog64 hydrog ? ? A G  42 O6  ? ? ? 1_555 A C   60 N4 ? ? A G  42   A C   60   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog65 hydrog ? ? A G  43 N1  ? ? ? 1_555 A C   59 N3 ? ? A G  43   A C   59   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog66 hydrog ? ? A G  43 N2  ? ? ? 1_555 A C   59 O2 ? ? A G  43   A C   59   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog67 hydrog ? ? A G  43 O6  ? ? ? 1_555 A C   59 N4 ? ? A G  43   A C   59   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog68 hydrog ? ? A C  44 N3  ? ? ? 1_555 A G   58 N1 ? ? A C  44   A G   58   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog69 hydrog ? ? A C  44 N4  ? ? ? 1_555 A G   58 O6 ? ? A C  44   A G   58   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog70 hydrog ? ? A C  44 O2  ? ? ? 1_555 A G   58 N2 ? ? A C  44   A G   58   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog71 hydrog ? ? A C  47 N3  ? ? ? 1_555 A G   56 N1 ? ? A C  47   A G   56   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog72 hydrog ? ? A C  47 N4  ? ? ? 1_555 A G   56 O6 ? ? A C  47   A G   56   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog73 hydrog ? ? A C  47 O2  ? ? ? 1_555 A G   56 N2 ? ? A C  47   A G   56   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog74 hydrog ? ? A C  48 N3  ? ? ? 1_555 A G   55 N1 ? ? A C  48   A G   55   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog75 hydrog ? ? A C  48 N4  ? ? ? 1_555 A G   55 O6 ? ? A C  48   A G   55   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog76 hydrog ? ? A C  48 O2  ? ? ? 1_555 A G   55 N2 ? ? A C  48   A G   55   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog77 hydrog ? ? A A  49 N1  ? ? ? 1_555 A U   54 N3 ? ? A A  49   A U   54   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog78 hydrog ? ? A A  49 N6  ? ? ? 1_555 A U   54 O4 ? ? A A  49   A U   54   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog79 hydrog ? ? A G  50 N2  ? ? ? 1_555 A A   53 N7 ? ? A G  50   A A   53   1_555 ? ? ? ? ? ? 'G-A MISPAIR' ?     ? ? 
hydrog80 hydrog ? ? A U  64 N3  ? ? ? 1_555 A A   85 N1 ? ? A U  64   A A   85   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog81 hydrog ? ? A U  64 O4  ? ? ? 1_555 A A   85 N6 ? ? A U  64   A A   85   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog82 hydrog ? ? A C  69 N3  ? ? ? 1_555 A G   82 N1 ? ? A C  69   A G   82   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog83 hydrog ? ? A C  69 N4  ? ? ? 1_555 A G   82 O6 ? ? A C  69   A G   82   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog84 hydrog ? ? A C  69 O2  ? ? ? 1_555 A G   82 N2 ? ? A C  69   A G   82   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog85 hydrog ? ? A A  70 N1  ? ? ? 1_555 A U   81 N3 ? ? A A  70   A U   81   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog86 hydrog ? ? A A  70 N6  ? ? ? 1_555 A U   81 O4 ? ? A A  70   A U   81   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog87 hydrog ? ? A G  71 N1  ? ? ? 1_555 A U   80 O2 ? ? A G  71   A U   80   1_555 ? ? ? ? ? ? TYPE_28_PAIR  ?     ? ? 
hydrog88 hydrog ? ? A G  71 O6  ? ? ? 1_555 A U   80 N3 ? ? A G  71   A U   80   1_555 ? ? ? ? ? ? TYPE_28_PAIR  ?     ? ? 
hydrog89 hydrog ? ? A C  72 N3  ? ? ? 1_555 A G   79 N1 ? ? A C  72   A G   79   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog90 hydrog ? ? A C  72 N4  ? ? ? 1_555 A G   79 O6 ? ? A C  72   A G   79   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog91 hydrog ? ? A C  72 O2  ? ? ? 1_555 A G   79 N2 ? ? A C  72   A G   79   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog92 hydrog ? ? A G  73 N1  ? ? ? 1_555 A C   78 N3 ? ? A G  73   A C   78   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog93 hydrog ? ? A G  73 N2  ? ? ? 1_555 A C   78 O2 ? ? A G  73   A C   78   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog94 hydrog ? ? A G  73 O6  ? ? ? 1_555 A C   78 N4 ? ? A G  73   A C   78   1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog95 hydrog ? ? A G  74 N2  ? ? ? 1_555 A A   77 N7 ? ? A G  74   A A   77   1_555 ? ? ? ? ? ? 'G-A MISPAIR' ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A SAM 1096 ? 14 'BINDING SITE FOR RESIDUE SAM A 1096' 
AC2 Software A NA  1097 ? 4  'BINDING SITE FOR RESIDUE NA A 1097'  
AC3 Software A K   1098 ? 1  'BINDING SITE FOR RESIDUE K A 1098'   
AC4 Software A NA  1099 ? 1  'BINDING SITE FOR RESIDUE NA A 1099'  
AC5 Software A NA  1100 ? 5  'BINDING SITE FOR RESIDUE NA A 1100'  
AC6 Software A NA  1101 ? 2  'BINDING SITE FOR RESIDUE NA A 1101'  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 14 U   A 7  ? U   A 7    . ? 1_555 ? 
2  AC1 14 C   A 8  ? C   A 8    . ? 1_555 ? 
3  AC1 14 A   A 10 ? A   A 10   . ? 1_555 ? 
4  AC1 14 G   A 11 ? G   A 11   . ? 1_555 ? 
5  AC1 14 A   A 45 ? A   A 45   . ? 1_555 ? 
6  AC1 14 A   A 46 ? A   A 46   . ? 1_555 ? 
7  AC1 14 C   A 47 ? C   A 47   . ? 1_555 ? 
8  AC1 14 U   A 57 ? U   A 57   . ? 1_555 ? 
9  AC1 14 G   A 58 ? G   A 58   . ? 1_555 ? 
10 AC1 14 C   A 59 ? C   A 59   . ? 1_555 ? 
11 AC1 14 U   A 88 ? U   A 88   . ? 1_555 ? 
12 AC1 14 G   A 89 ? G   A 89   . ? 1_555 ? 
13 AC1 14 HOH H .  ? HOH A 2004 . ? 1_555 ? 
14 AC1 14 HOH H .  ? HOH A 2006 . ? 1_555 ? 
15 AC2 4  A   A 10 ? A   A 10   . ? 1_555 ? 
16 AC2 4  G   A 11 ? G   A 11   . ? 1_555 ? 
17 AC2 4  U   A 64 ? U   A 64   . ? 1_555 ? 
18 AC2 4  HOH H .  ? HOH A 2005 . ? 1_555 ? 
19 AC3 1  G   A 74 ? G   A 74   . ? 1_555 ? 
20 AC4 1  G   A 13 ? G   A 13   . ? 1_555 ? 
21 AC5 5  G   A 32 ? G   A 32   . ? 1_555 ? 
22 AC5 5  A   A 33 ? A   A 33   . ? 8_554 ? 
23 AC5 5  HOH H .  ? HOH A 2013 . ? 1_555 ? 
24 AC5 5  HOH H .  ? HOH A 2013 . ? 8_554 ? 
25 AC5 5  HOH H .  ? HOH A 2014 . ? 1_555 ? 
26 AC6 2  HOH H .  ? HOH A 2015 . ? 1_555 ? 
27 AC6 2  HOH H .  ? HOH A 2016 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          2YGH 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    2YGH 
_atom_sites.fract_transf_matrix[1][1]   0.017106 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.017106 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.006441 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
K  
N  
NA 
O  
P  
S  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  G 1  1  1  G G A . n 
A 1 2  G 2  2  2  G G A . n 
A 1 3  C 3  3  3  C C A . n 
A 1 4  U 4  4  4  U U A . n 
A 1 5  U 5  5  5  U U A . n 
A 1 6  A 6  6  6  A A A . n 
A 1 7  U 7  7  7  U U A . n 
A 1 8  C 8  8  8  C C A . n 
A 1 9  A 9  9  9  A A A . n 
A 1 10 A 10 10 10 A A A . n 
A 1 11 G 11 11 11 G G A . n 
A 1 12 A 12 12 12 A A A . n 
A 1 13 G 13 13 13 G G A . n 
A 1 14 A 14 14 14 A A A . n 
A 1 15 G 15 15 15 G G A . n 
A 1 16 G 16 16 16 G G A . n 
A 1 17 U 17 17 17 U U A . n 
A 1 18 G 18 18 18 G G A . n 
A 1 19 A 19 19 19 A A A . n 
A 1 20 A 20 20 20 A A A . n 
A 1 21 G 21 21 21 G G A . n 
A 1 22 G 22 22 22 G G A . n 
A 1 23 G 23 23 23 G G A . n 
A 1 24 A 24 24 24 A A A . n 
A 1 25 C 25 25 25 C C A . n 
A 1 26 U 26 26 26 U U A . n 
A 1 27 G 27 27 27 G G A . n 
A 1 28 G 28 28 28 G G A . n 
A 1 29 C 29 29 29 C C A . n 
A 1 30 C 30 30 30 C C A . n 
A 1 31 C 31 31 31 C C A . n 
A 1 32 G 32 32 32 G G A . n 
A 1 33 A 33 33 33 A A A . n 
A 1 34 C 34 34 34 C C A . n 
A 1 35 G 35 35 35 G G A . n 
A 1 36 A 36 36 36 A A A . n 
A 1 37 A 37 37 37 A A A . n 
A 1 38 A 38 38 38 A A A . n 
A 1 39 C 39 39 39 C C A . n 
A 1 40 C 40 40 40 C C A . n 
A 1 41 C 41 41 41 C C A . n 
A 1 42 G 42 42 42 G G A . n 
A 1 43 G 43 43 43 G G A . n 
A 1 44 C 44 44 44 C C A . n 
A 1 45 A 45 45 45 A A A . n 
A 1 46 A 46 46 46 A A A . n 
A 1 47 C 47 47 47 C C A . n 
A 1 48 C 48 48 48 C C A . n 
A 1 49 A 49 49 49 A A A . n 
A 1 50 G 50 50 50 G G A . n 
A 1 51 A 51 51 51 A A A . n 
A 1 52 A 52 52 52 A A A . n 
A 1 53 A 53 53 53 A A A . n 
A 1 54 U 54 54 54 U U A . n 
A 1 55 G 55 55 55 G G A . n 
A 1 56 G 56 56 56 G G A . n 
A 1 57 U 57 57 57 U U A . n 
A 1 58 G 58 58 58 G G A . n 
A 1 59 C 59 59 59 C C A . n 
A 1 60 C 60 60 60 C C A . n 
A 1 61 A 61 61 61 A A A . n 
A 1 62 A 62 62 62 A A A . n 
A 1 63 U 63 63 63 U U A . n 
A 1 64 U 64 64 64 U U A . n 
A 1 65 C 65 65 65 C C A . n 
A 1 66 C 66 66 66 C C A . n 
A 1 67 U 67 67 67 U U A . n 
A 1 68 G 68 68 68 G G A . n 
A 1 69 C 69 69 69 C C A . n 
A 1 70 A 70 70 70 A A A . n 
A 1 71 G 71 71 71 G G A . n 
A 1 72 C 72 72 72 C C A . n 
A 1 73 G 73 73 73 G G A . n 
A 1 74 G 74 74 74 G G A . n 
A 1 75 A 75 75 75 A A A . n 
A 1 76 A 76 76 76 A A A . n 
A 1 77 A 77 77 77 A A A . n 
A 1 78 C 78 78 78 C C A . n 
A 1 79 G 79 79 79 G G A . n 
A 1 80 U 80 80 80 U U A . n 
A 1 81 U 81 81 81 U U A . n 
A 1 82 G 82 82 82 G G A . n 
A 1 83 A 83 83 83 A A A . n 
A 1 84 A 84 84 84 A A A . n 
A 1 85 A 85 85 85 A A A . n 
A 1 86 G 86 86 86 G G A . n 
A 1 87 A 87 87 87 A A A . n 
A 1 88 U 88 88 88 U U A . n 
A 1 89 G 89 89 89 G G A . n 
A 1 90 A 90 90 90 A A A . n 
A 1 91 G 91 91 91 G G A . n 
A 1 92 C 92 92 92 C C A . n 
A 1 93 C 93 93 93 C C A . n 
A 1 94 G 94 94 94 G G A . n 
A 1 95 A 95 95 95 A A A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 SAM 1  1096 1096 SAM SAM A . 
C 3 NA  1  1097 1097 NA  NA  A . 
D 4 K   1  1098 1098 K   K   A . 
E 3 NA  1  1099 1099 NA  NA  A . 
F 3 NA  1  1100 1100 NA  NA  A . 
G 3 NA  1  1101 1101 NA  NA  A . 
H 5 HOH 1  2001 2001 HOH HOH A . 
H 5 HOH 2  2002 2002 HOH HOH A . 
H 5 HOH 3  2003 2003 HOH HOH A . 
H 5 HOH 4  2004 2004 HOH HOH A . 
H 5 HOH 5  2005 2005 HOH HOH A . 
H 5 HOH 6  2006 2006 HOH HOH A . 
H 5 HOH 7  2007 2007 HOH HOH A . 
H 5 HOH 8  2008 2008 HOH HOH A . 
H 5 HOH 9  2009 2009 HOH HOH A . 
H 5 HOH 10 2010 2010 HOH HOH A . 
H 5 HOH 11 2011 2011 HOH HOH A . 
H 5 HOH 12 2012 2012 HOH HOH A . 
H 5 HOH 13 2013 2013 HOH HOH A . 
H 5 HOH 14 2014 2014 HOH HOH A . 
H 5 HOH 15 2015 2015 HOH HOH A . 
H 5 HOH 16 2016 2016 HOH HOH A . 
H 5 HOH 17 2017 2017 HOH HOH A . 
H 5 HOH 18 2018 2018 HOH HOH A . 
H 5 HOH 19 2019 2019 HOH HOH A . 
H 5 HOH 20 2020 2020 HOH HOH A . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 2090  ? 
1 MORE         -96.9 ? 
1 'SSA (A^2)'  29470 ? 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z        1.0000000000 0.0000000000  0.0000000000 0.0000000000 0.0000000000  1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000   
2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -77.6300000000 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1 OP2 ? A A   10 ? A A   10   ? 1_555 NA ? C NA . ? A NA 1097 ? 1_555 OP2 ? A U   64 ? A U   64   ? 1_555 71.2 ? 
2 OP2 ? A A   10 ? A A   10   ? 1_555 NA ? C NA . ? A NA 1097 ? 1_555 O   ? H HOH .  ? A HOH 2005 ? 1_555 64.4 ? 
3 OP2 ? A U   64 ? A U   64   ? 1_555 NA ? C NA . ? A NA 1097 ? 1_555 O   ? H HOH .  ? A HOH 2005 ? 1_555 68.3 ? 
4 N7  ? A G   74 ? A G   74   ? 1_555 K  ? D K  . ? A K  1098 ? 1_555 O6  ? A G   74 ? A G   74   ? 1_555 60.8 ? 
5 O   ? H HOH .  ? A HOH 2013 ? 8_554 NA ? F NA . ? A NA 1100 ? 1_555 O   ? H HOH .  ? A HOH 2013 ? 1_555 55.1 ? 
6 O   ? H HOH .  ? A HOH 2013 ? 8_554 NA ? F NA . ? A NA 1100 ? 1_555 O   ? H HOH .  ? A HOH 2014 ? 1_555 67.6 ? 
7 O   ? H HOH .  ? A HOH 2013 ? 1_555 NA ? F NA . ? A NA 1100 ? 1_555 O   ? H HOH .  ? A HOH 2014 ? 1_555 72.7 ? 
8 O   ? H HOH .  ? A HOH 2015 ? 1_555 NA ? G NA . ? A NA 1101 ? 1_555 O   ? H HOH .  ? A HOH 2016 ? 1_555 67.5 ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2011-09-07 
2 'Structure model' 1 1 2011-09-21 
3 'Structure model' 1 2 2023-12-20 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Data collection'        
3 3 'Structure model' 'Database references'    
4 3 'Structure model' 'Derived calculations'   
5 3 'Structure model' Other                    
6 3 'Structure model' 'Refinement description' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' chem_comp_atom                
2 3 'Structure model' chem_comp_bond                
3 3 'Structure model' database_2                    
4 3 'Structure model' pdbx_database_status          
5 3 'Structure model' pdbx_initial_refinement_model 
6 3 'Structure model' pdbx_struct_conn_angle        
7 3 'Structure model' struct_conn                   
8 3 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  3 'Structure model' '_database_2.pdbx_DOI'                        
2  3 'Structure model' '_database_2.pdbx_database_accession'         
3  3 'Structure model' '_pdbx_database_status.status_code_sf'        
4  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
5  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
6  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
7  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
8  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
9  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'      
11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'      
18 3 'Structure model' '_pdbx_struct_conn_angle.value'               
19 3 'Structure model' '_struct_conn.pdbx_dist_value'                
20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
25 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
31 3 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
32 3 'Structure model' '_struct_conn.ptnr2_symmetry'                 
33 3 'Structure model' '_struct_site.pdbx_auth_asym_id'              
34 3 'Structure model' '_struct_site.pdbx_auth_comp_id'              
35 3 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
REFMAC refinement       5.5.0109 ? 1 
MOSFLM 'data reduction' .        ? 2 
SCALA  'data scaling'   .        ? 3 
MOLREP phasing          .        ? 4 
# 
_pdbx_entry_details.entry_id                 2YGH 
_pdbx_entry_details.compound_details         ? 
_pdbx_entry_details.source_details           ? 
_pdbx_entry_details.nonpolymer_details       ? 
_pdbx_entry_details.sequence_details         'APTAMER DOMAIN FRAGMENT WITH MUTATION [G19A,A94G].' 
_pdbx_entry_details.has_ligand_of_interest   ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 P     A G 1 ? ? OP3   A G 1 ? ? 1.480 1.607 -0.127 0.012 N 
2 1 "O5'" A G 1 ? ? "C5'" A G 1 ? ? 1.739 1.440 0.299  0.016 N 
3 1 "C4'" A G 1 ? ? "C3'" A G 1 ? ? 1.290 1.521 -0.231 0.010 N 
4 1 "O4'" A G 1 ? ? "C4'" A G 1 ? ? 1.601 1.454 0.147  0.010 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 P     A G 1  ? ? "O5'" A G 1  ? ? "C5'" A G 1  ? ? 111.15 120.90 -9.75 1.60 N 
2  1 "O4'" A G 1  ? ? "C4'" A G 1  ? ? "C3'" A G 1  ? ? 112.72 106.10 6.62  0.80 N 
3  1 "C5'" A G 1  ? ? "C4'" A G 1  ? ? "O4'" A G 1  ? ? 115.43 109.80 5.63  0.90 N 
4  1 "C1'" A G 1  ? ? "O4'" A G 1  ? ? "C4'" A G 1  ? ? 102.23 109.70 -7.47 0.70 N 
5  1 "C4'" A G 1  ? ? "C3'" A G 1  ? ? "O3'" A G 1  ? ? 131.12 113.00 18.12 2.00 N 
6  1 "O4'" A U 7  ? ? "C1'" A U 7  ? ? N1    A U 7  ? ? 112.81 108.50 4.31  0.70 N 
7  1 "O4'" A A 12 ? ? "C1'" A A 12 ? ? N9    A A 12 ? ? 113.43 108.50 4.93  0.70 N 
8  1 "C1'" A A 14 ? ? "O4'" A A 14 ? ? "C4'" A A 14 ? ? 103.37 109.70 -6.33 0.70 N 
9  1 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9    A A 14 ? ? 114.05 108.50 5.55  0.70 N 
10 1 "C5'" A A 19 ? ? "C4'" A A 19 ? ? "O4'" A A 19 ? ? 116.42 109.80 6.62  0.90 N 
11 1 "C1'" A A 19 ? ? "O4'" A A 19 ? ? "C4'" A A 19 ? ? 105.09 109.70 -4.61 0.70 N 
12 1 "O4'" A A 19 ? ? "C1'" A A 19 ? ? N9    A A 19 ? ? 113.64 108.50 5.14  0.70 N 
13 1 "O4'" A G 21 ? ? "C1'" A G 21 ? ? N9    A G 21 ? ? 114.10 108.50 5.60  0.70 N 
14 1 "C4'" A G 23 ? ? "C3'" A G 23 ? ? "C2'" A G 23 ? ? 96.36  102.60 -6.24 1.00 N 
15 1 "O5'" A C 30 ? ? "C5'" A C 30 ? ? "C4'" A C 30 ? ? 104.21 109.40 -5.19 0.80 N 
16 1 "O5'" A A 33 ? ? "C5'" A A 33 ? ? "C4'" A A 33 ? ? 104.36 109.40 -5.04 0.80 N 
17 1 "O4'" A C 39 ? ? "C1'" A C 39 ? ? N1    A C 39 ? ? 114.60 108.50 6.10  0.70 N 
18 1 "O4'" A C 40 ? ? "C1'" A C 40 ? ? N1    A C 40 ? ? 114.36 108.50 5.86  0.70 N 
19 1 C2    A A 45 ? ? N3    A A 45 ? ? C4    A A 45 ? ? 114.14 110.60 3.54  0.50 N 
20 1 "O5'" A U 57 ? ? "C5'" A U 57 ? ? "C4'" A U 57 ? ? 102.16 109.40 -7.24 0.80 N 
21 1 N9    A G 74 ? ? "C1'" A G 74 ? ? "C2'" A G 74 ? ? 104.42 112.00 -7.58 1.10 N 
22 1 "C4'" A G 79 ? ? "C3'" A G 79 ? ? "C2'" A G 79 ? ? 96.53  102.60 -6.07 1.00 N 
23 1 "C3'" A G 79 ? ? "O3'" A G 79 ? ? P     A U 80 ? ? 128.24 119.70 8.54  1.20 Y 
24 1 "C4'" A G 91 ? ? "C3'" A G 91 ? ? "C2'" A G 91 ? ? 96.10  102.60 -6.50 1.00 N 
# 
loop_
_pdbx_unobs_or_zero_occ_atoms.id 
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 
_pdbx_unobs_or_zero_occ_atoms.polymer_flag 
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id 
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id 
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code 
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id 
_pdbx_unobs_or_zero_occ_atoms.label_alt_id 
_pdbx_unobs_or_zero_occ_atoms.label_asym_id 
_pdbx_unobs_or_zero_occ_atoms.label_comp_id 
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 
_pdbx_unobs_or_zero_occ_atoms.label_atom_id 
1  1 Y 0 A G 1  ? "C5'" ? A G 1  "C5'" 
2  1 Y 0 A G 1  ? "C4'" ? A G 1  "C4'" 
3  1 Y 1 A A 95 ? "C5'" ? A A 95 "C5'" 
4  1 Y 1 A A 95 ? "C4'" ? A A 95 "C4'" 
5  1 Y 1 A A 95 ? "O4'" ? A A 95 "O4'" 
6  1 Y 1 A A 95 ? "C3'" ? A A 95 "C3'" 
7  1 Y 1 A A 95 ? "O3'" ? A A 95 "O3'" 
8  1 Y 1 A A 95 ? "C2'" ? A A 95 "C2'" 
9  1 Y 1 A A 95 ? "O2'" ? A A 95 "O2'" 
10 1 Y 1 A A 95 ? "C1'" ? A A 95 "C1'" 
11 1 Y 1 A A 95 ? N9    ? A A 95 N9    
12 1 Y 1 A A 95 ? C8    ? A A 95 C8    
13 1 Y 1 A A 95 ? N7    ? A A 95 N7    
14 1 Y 1 A A 95 ? C5    ? A A 95 C5    
15 1 Y 1 A A 95 ? C6    ? A A 95 C6    
16 1 Y 1 A A 95 ? N6    ? A A 95 N6    
17 1 Y 1 A A 95 ? N1    ? A A 95 N1    
18 1 Y 1 A A 95 ? C2    ? A A 95 C2    
19 1 Y 1 A A 95 ? N3    ? A A 95 N3    
20 1 Y 1 A A 95 ? C4    ? A A 95 C4    
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A   OP3    O  N N 1   
A   P      P  N N 2   
A   OP1    O  N N 3   
A   OP2    O  N N 4   
A   "O5'"  O  N N 5   
A   "C5'"  C  N N 6   
A   "C4'"  C  N R 7   
A   "O4'"  O  N N 8   
A   "C3'"  C  N S 9   
A   "O3'"  O  N N 10  
A   "C2'"  C  N R 11  
A   "O2'"  O  N N 12  
A   "C1'"  C  N R 13  
A   N9     N  Y N 14  
A   C8     C  Y N 15  
A   N7     N  Y N 16  
A   C5     C  Y N 17  
A   C6     C  Y N 18  
A   N6     N  N N 19  
A   N1     N  Y N 20  
A   C2     C  Y N 21  
A   N3     N  Y N 22  
A   C4     C  Y N 23  
A   HOP3   H  N N 24  
A   HOP2   H  N N 25  
A   "H5'"  H  N N 26  
A   "H5''" H  N N 27  
A   "H4'"  H  N N 28  
A   "H3'"  H  N N 29  
A   "HO3'" H  N N 30  
A   "H2'"  H  N N 31  
A   "HO2'" H  N N 32  
A   "H1'"  H  N N 33  
A   H8     H  N N 34  
A   H61    H  N N 35  
A   H62    H  N N 36  
A   H2     H  N N 37  
C   OP3    O  N N 38  
C   P      P  N N 39  
C   OP1    O  N N 40  
C   OP2    O  N N 41  
C   "O5'"  O  N N 42  
C   "C5'"  C  N N 43  
C   "C4'"  C  N R 44  
C   "O4'"  O  N N 45  
C   "C3'"  C  N S 46  
C   "O3'"  O  N N 47  
C   "C2'"  C  N R 48  
C   "O2'"  O  N N 49  
C   "C1'"  C  N R 50  
C   N1     N  N N 51  
C   C2     C  N N 52  
C   O2     O  N N 53  
C   N3     N  N N 54  
C   C4     C  N N 55  
C   N4     N  N N 56  
C   C5     C  N N 57  
C   C6     C  N N 58  
C   HOP3   H  N N 59  
C   HOP2   H  N N 60  
C   "H5'"  H  N N 61  
C   "H5''" H  N N 62  
C   "H4'"  H  N N 63  
C   "H3'"  H  N N 64  
C   "HO3'" H  N N 65  
C   "H2'"  H  N N 66  
C   "HO2'" H  N N 67  
C   "H1'"  H  N N 68  
C   H41    H  N N 69  
C   H42    H  N N 70  
C   H5     H  N N 71  
C   H6     H  N N 72  
G   OP3    O  N N 73  
G   P      P  N N 74  
G   OP1    O  N N 75  
G   OP2    O  N N 76  
G   "O5'"  O  N N 77  
G   "C5'"  C  N N 78  
G   "C4'"  C  N R 79  
G   "O4'"  O  N N 80  
G   "C3'"  C  N S 81  
G   "O3'"  O  N N 82  
G   "C2'"  C  N R 83  
G   "O2'"  O  N N 84  
G   "C1'"  C  N R 85  
G   N9     N  Y N 86  
G   C8     C  Y N 87  
G   N7     N  Y N 88  
G   C5     C  Y N 89  
G   C6     C  N N 90  
G   O6     O  N N 91  
G   N1     N  N N 92  
G   C2     C  N N 93  
G   N2     N  N N 94  
G   N3     N  N N 95  
G   C4     C  Y N 96  
G   HOP3   H  N N 97  
G   HOP2   H  N N 98  
G   "H5'"  H  N N 99  
G   "H5''" H  N N 100 
G   "H4'"  H  N N 101 
G   "H3'"  H  N N 102 
G   "HO3'" H  N N 103 
G   "H2'"  H  N N 104 
G   "HO2'" H  N N 105 
G   "H1'"  H  N N 106 
G   H8     H  N N 107 
G   H1     H  N N 108 
G   H21    H  N N 109 
G   H22    H  N N 110 
HOH O      O  N N 111 
HOH H1     H  N N 112 
HOH H2     H  N N 113 
K   K      K  N N 114 
NA  NA     NA N N 115 
SAM N      N  N N 116 
SAM CA     C  N S 117 
SAM C      C  N N 118 
SAM O      O  N N 119 
SAM OXT    O  N N 120 
SAM CB     C  N N 121 
SAM CG     C  N N 122 
SAM SD     S  N S 123 
SAM CE     C  N N 124 
SAM "C5'"  C  N N 125 
SAM "C4'"  C  N S 126 
SAM "O4'"  O  N N 127 
SAM "C3'"  C  N S 128 
SAM "O3'"  O  N N 129 
SAM "C2'"  C  N R 130 
SAM "O2'"  O  N N 131 
SAM "C1'"  C  N R 132 
SAM N9     N  Y N 133 
SAM C8     C  Y N 134 
SAM N7     N  Y N 135 
SAM C5     C  Y N 136 
SAM C6     C  Y N 137 
SAM N6     N  N N 138 
SAM N1     N  Y N 139 
SAM C2     C  Y N 140 
SAM N3     N  Y N 141 
SAM C4     C  Y N 142 
SAM HN1    H  N N 143 
SAM HN2    H  N N 144 
SAM HA     H  N N 145 
SAM HB1    H  N N 146 
SAM HB2    H  N N 147 
SAM HG1    H  N N 148 
SAM HG2    H  N N 149 
SAM HE1    H  N N 150 
SAM HE2    H  N N 151 
SAM HE3    H  N N 152 
SAM "H5'1" H  N N 153 
SAM "H5'2" H  N N 154 
SAM "H4'"  H  N N 155 
SAM "H3'"  H  N N 156 
SAM "HO3'" H  N N 157 
SAM "H2'"  H  N N 158 
SAM "HO2'" H  N N 159 
SAM "H1'"  H  N N 160 
SAM H8     H  N N 161 
SAM HN61   H  N N 162 
SAM HN62   H  N N 163 
SAM H2     H  N N 164 
U   OP3    O  N N 165 
U   P      P  N N 166 
U   OP1    O  N N 167 
U   OP2    O  N N 168 
U   "O5'"  O  N N 169 
U   "C5'"  C  N N 170 
U   "C4'"  C  N R 171 
U   "O4'"  O  N N 172 
U   "C3'"  C  N S 173 
U   "O3'"  O  N N 174 
U   "C2'"  C  N R 175 
U   "O2'"  O  N N 176 
U   "C1'"  C  N R 177 
U   N1     N  N N 178 
U   C2     C  N N 179 
U   O2     O  N N 180 
U   N3     N  N N 181 
U   C4     C  N N 182 
U   O4     O  N N 183 
U   C5     C  N N 184 
U   C6     C  N N 185 
U   HOP3   H  N N 186 
U   HOP2   H  N N 187 
U   "H5'"  H  N N 188 
U   "H5''" H  N N 189 
U   "H4'"  H  N N 190 
U   "H3'"  H  N N 191 
U   "HO3'" H  N N 192 
U   "H2'"  H  N N 193 
U   "HO2'" H  N N 194 
U   "H1'"  H  N N 195 
U   H3     H  N N 196 
U   H5     H  N N 197 
U   H6     H  N N 198 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A   OP3   P      sing N N 1   
A   OP3   HOP3   sing N N 2   
A   P     OP1    doub N N 3   
A   P     OP2    sing N N 4   
A   P     "O5'"  sing N N 5   
A   OP2   HOP2   sing N N 6   
A   "O5'" "C5'"  sing N N 7   
A   "C5'" "C4'"  sing N N 8   
A   "C5'" "H5'"  sing N N 9   
A   "C5'" "H5''" sing N N 10  
A   "C4'" "O4'"  sing N N 11  
A   "C4'" "C3'"  sing N N 12  
A   "C4'" "H4'"  sing N N 13  
A   "O4'" "C1'"  sing N N 14  
A   "C3'" "O3'"  sing N N 15  
A   "C3'" "C2'"  sing N N 16  
A   "C3'" "H3'"  sing N N 17  
A   "O3'" "HO3'" sing N N 18  
A   "C2'" "O2'"  sing N N 19  
A   "C2'" "C1'"  sing N N 20  
A   "C2'" "H2'"  sing N N 21  
A   "O2'" "HO2'" sing N N 22  
A   "C1'" N9     sing N N 23  
A   "C1'" "H1'"  sing N N 24  
A   N9    C8     sing Y N 25  
A   N9    C4     sing Y N 26  
A   C8    N7     doub Y N 27  
A   C8    H8     sing N N 28  
A   N7    C5     sing Y N 29  
A   C5    C6     sing Y N 30  
A   C5    C4     doub Y N 31  
A   C6    N6     sing N N 32  
A   C6    N1     doub Y N 33  
A   N6    H61    sing N N 34  
A   N6    H62    sing N N 35  
A   N1    C2     sing Y N 36  
A   C2    N3     doub Y N 37  
A   C2    H2     sing N N 38  
A   N3    C4     sing Y N 39  
C   OP3   P      sing N N 40  
C   OP3   HOP3   sing N N 41  
C   P     OP1    doub N N 42  
C   P     OP2    sing N N 43  
C   P     "O5'"  sing N N 44  
C   OP2   HOP2   sing N N 45  
C   "O5'" "C5'"  sing N N 46  
C   "C5'" "C4'"  sing N N 47  
C   "C5'" "H5'"  sing N N 48  
C   "C5'" "H5''" sing N N 49  
C   "C4'" "O4'"  sing N N 50  
C   "C4'" "C3'"  sing N N 51  
C   "C4'" "H4'"  sing N N 52  
C   "O4'" "C1'"  sing N N 53  
C   "C3'" "O3'"  sing N N 54  
C   "C3'" "C2'"  sing N N 55  
C   "C3'" "H3'"  sing N N 56  
C   "O3'" "HO3'" sing N N 57  
C   "C2'" "O2'"  sing N N 58  
C   "C2'" "C1'"  sing N N 59  
C   "C2'" "H2'"  sing N N 60  
C   "O2'" "HO2'" sing N N 61  
C   "C1'" N1     sing N N 62  
C   "C1'" "H1'"  sing N N 63  
C   N1    C2     sing N N 64  
C   N1    C6     sing N N 65  
C   C2    O2     doub N N 66  
C   C2    N3     sing N N 67  
C   N3    C4     doub N N 68  
C   C4    N4     sing N N 69  
C   C4    C5     sing N N 70  
C   N4    H41    sing N N 71  
C   N4    H42    sing N N 72  
C   C5    C6     doub N N 73  
C   C5    H5     sing N N 74  
C   C6    H6     sing N N 75  
G   OP3   P      sing N N 76  
G   OP3   HOP3   sing N N 77  
G   P     OP1    doub N N 78  
G   P     OP2    sing N N 79  
G   P     "O5'"  sing N N 80  
G   OP2   HOP2   sing N N 81  
G   "O5'" "C5'"  sing N N 82  
G   "C5'" "C4'"  sing N N 83  
G   "C5'" "H5'"  sing N N 84  
G   "C5'" "H5''" sing N N 85  
G   "C4'" "O4'"  sing N N 86  
G   "C4'" "C3'"  sing N N 87  
G   "C4'" "H4'"  sing N N 88  
G   "O4'" "C1'"  sing N N 89  
G   "C3'" "O3'"  sing N N 90  
G   "C3'" "C2'"  sing N N 91  
G   "C3'" "H3'"  sing N N 92  
G   "O3'" "HO3'" sing N N 93  
G   "C2'" "O2'"  sing N N 94  
G   "C2'" "C1'"  sing N N 95  
G   "C2'" "H2'"  sing N N 96  
G   "O2'" "HO2'" sing N N 97  
G   "C1'" N9     sing N N 98  
G   "C1'" "H1'"  sing N N 99  
G   N9    C8     sing Y N 100 
G   N9    C4     sing Y N 101 
G   C8    N7     doub Y N 102 
G   C8    H8     sing N N 103 
G   N7    C5     sing Y N 104 
G   C5    C6     sing N N 105 
G   C5    C4     doub Y N 106 
G   C6    O6     doub N N 107 
G   C6    N1     sing N N 108 
G   N1    C2     sing N N 109 
G   N1    H1     sing N N 110 
G   C2    N2     sing N N 111 
G   C2    N3     doub N N 112 
G   N2    H21    sing N N 113 
G   N2    H22    sing N N 114 
G   N3    C4     sing N N 115 
HOH O     H1     sing N N 116 
HOH O     H2     sing N N 117 
SAM N     CA     sing N N 118 
SAM N     HN1    sing N N 119 
SAM N     HN2    sing N N 120 
SAM CA    C      sing N N 121 
SAM CA    CB     sing N N 122 
SAM CA    HA     sing N N 123 
SAM C     O      doub N N 124 
SAM C     OXT    sing N N 125 
SAM CB    CG     sing N N 126 
SAM CB    HB1    sing N N 127 
SAM CB    HB2    sing N N 128 
SAM CG    SD     sing N N 129 
SAM CG    HG1    sing N N 130 
SAM CG    HG2    sing N N 131 
SAM SD    CE     sing N N 132 
SAM SD    "C5'"  sing N N 133 
SAM CE    HE1    sing N N 134 
SAM CE    HE2    sing N N 135 
SAM CE    HE3    sing N N 136 
SAM "C5'" "C4'"  sing N N 137 
SAM "C5'" "H5'1" sing N N 138 
SAM "C5'" "H5'2" sing N N 139 
SAM "C4'" "O4'"  sing N N 140 
SAM "C4'" "C3'"  sing N N 141 
SAM "C4'" "H4'"  sing N N 142 
SAM "O4'" "C1'"  sing N N 143 
SAM "C3'" "O3'"  sing N N 144 
SAM "C3'" "C2'"  sing N N 145 
SAM "C3'" "H3'"  sing N N 146 
SAM "O3'" "HO3'" sing N N 147 
SAM "C2'" "O2'"  sing N N 148 
SAM "C2'" "C1'"  sing N N 149 
SAM "C2'" "H2'"  sing N N 150 
SAM "O2'" "HO2'" sing N N 151 
SAM "C1'" N9     sing N N 152 
SAM "C1'" "H1'"  sing N N 153 
SAM N9    C8     sing Y N 154 
SAM N9    C4     sing Y N 155 
SAM C8    N7     doub Y N 156 
SAM C8    H8     sing N N 157 
SAM N7    C5     sing Y N 158 
SAM C5    C6     sing Y N 159 
SAM C5    C4     doub Y N 160 
SAM C6    N6     sing N N 161 
SAM C6    N1     doub Y N 162 
SAM N6    HN61   sing N N 163 
SAM N6    HN62   sing N N 164 
SAM N1    C2     sing Y N 165 
SAM C2    N3     doub Y N 166 
SAM C2    H2     sing N N 167 
SAM N3    C4     sing Y N 168 
U   OP3   P      sing N N 169 
U   OP3   HOP3   sing N N 170 
U   P     OP1    doub N N 171 
U   P     OP2    sing N N 172 
U   P     "O5'"  sing N N 173 
U   OP2   HOP2   sing N N 174 
U   "O5'" "C5'"  sing N N 175 
U   "C5'" "C4'"  sing N N 176 
U   "C5'" "H5'"  sing N N 177 
U   "C5'" "H5''" sing N N 178 
U   "C4'" "O4'"  sing N N 179 
U   "C4'" "C3'"  sing N N 180 
U   "C4'" "H4'"  sing N N 181 
U   "O4'" "C1'"  sing N N 182 
U   "C3'" "O3'"  sing N N 183 
U   "C3'" "C2'"  sing N N 184 
U   "C3'" "H3'"  sing N N 185 
U   "O3'" "HO3'" sing N N 186 
U   "C2'" "O2'"  sing N N 187 
U   "C2'" "C1'"  sing N N 188 
U   "C2'" "H2'"  sing N N 189 
U   "O2'" "HO2'" sing N N 190 
U   "C1'" N1     sing N N 191 
U   "C1'" "H1'"  sing N N 192 
U   N1    C2     sing N N 193 
U   N1    C6     sing N N 194 
U   C2    O2     doub N N 195 
U   C2    N3     sing N N 196 
U   N3    C4     sing N N 197 
U   N3    H3     sing N N 198 
U   C4    O4     doub N N 199 
U   C4    C5     sing N N 200 
U   C5    C6     doub N N 201 
U   C5    H5     sing N N 202 
U   C6    H6     sing N N 203 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
2YGH 'double helix'         
2YGH 'a-form double helix'  
2YGH tetraloop              
2YGH 'bulge loop'           
2YGH 'mismatched base pair' 
2YGH 'triple helix'         
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G 1  1_555 A C 93 1_555 -0.502 0.361  -0.184 -2.306  -9.323  0.210   1  A_G1:C93_A  A 1  ? A 93 ? 19 1  
1 A G 2  1_555 A C 92 1_555 -0.664 -0.201 -0.201 -6.621  -12.946 5.604   2  A_G2:C92_A  A 2  ? A 92 ? 19 1  
1 A C 3  1_555 A G 91 1_555 -0.119 -0.223 -0.230 0.354   -15.113 -0.189  3  A_C3:G91_A  A 3  ? A 91 ? 19 1  
1 A U 4  1_555 A A 90 1_555 -0.117 0.032  0.259  -15.346 -15.888 7.110   4  A_U4:A90_A  A 4  ? A 90 ? 20 1  
1 A U 5  1_555 A G 89 1_555 2.589  -0.547 0.231  -4.285  -14.818 3.249   5  A_U5:G89_A  A 5  ? A 89 ? 28 1  
1 A A 6  1_555 A U 88 1_555 -0.044 -0.149 0.035  3.077   -18.101 0.790   6  A_A6:U88_A  A 6  ? A 88 ? 20 1  
1 A U 7  1_555 A A 87 1_555 -0.333 -0.083 0.517  -9.612  -10.594 2.812   7  A_U7:A87_A  A 7  ? A 87 ? 20 1  
1 A C 8  1_555 A G 86 1_555 0.722  -0.132 -0.116 5.334   -11.873 -0.851  8  A_C8:G86_A  A 8  ? A 86 ? 19 1  
1 A U 64 1_555 A A 85 1_555 0.055  -0.136 0.173  -7.001  -16.550 -0.256  9  A_U64:A85_A A 64 ? A 85 ? 20 1  
1 A G 35 1_555 A A 20 1_555 6.252  -4.453 0.714  23.235  23.214  5.046   10 A_G35:A20_A A 35 ? A 20 ? 11 9  
1 A A 36 1_555 A A 19 1_555 -6.488 -5.052 0.044  -23.582 -1.257  -12.418 11 A_A36:A19_A A 36 ? A 19 ? ?  10 
1 A A 37 1_555 A G 18 1_555 -6.870 -4.183 -0.026 5.904   -0.118  2.714   12 A_A37:G18_A A 37 ? A 18 ? 11 10 
1 A A 38 1_555 A U 17 1_555 -2.059 -0.206 -0.348 16.301  -13.103 10.630  13 A_A38:U17_A A 38 ? A 17 ? ?  1  
1 A C 39 1_555 A G 16 1_555 0.555  -0.149 -0.181 11.545  -9.058  7.920   14 A_C39:G16_A A 39 ? A 16 ? 19 1  
1 A C 40 1_555 A G 15 1_555 0.108  0.073  -0.160 1.306   0.484   2.038   15 A_C40:G15_A A 40 ? A 15 ? 19 1  
1 A C 41 1_555 A G 13 1_555 0.574  -0.394 0.244  11.382  -9.276  2.608   16 A_C41:G13_A A 41 ? A 13 ? 19 1  
1 A G 42 1_555 A C 60 1_555 -0.609 -0.191 -0.171 0.620   -12.678 -1.098  17 A_G42:C60_A A 42 ? A 60 ? 19 1  
1 A G 43 1_555 A C 59 1_555 -0.249 -0.095 -0.264 -12.145 -17.116 3.719   18 A_G43:C59_A A 43 ? A 59 ? 19 1  
1 A C 44 1_555 A G 58 1_555 0.088  -0.242 0.322  -14.241 -16.555 -2.138  19 A_C44:G58_A A 44 ? A 58 ? 19 1  
1 A C 47 1_555 A G 56 1_555 0.329  -0.065 -0.173 7.362   -2.840  0.009   20 A_C47:G56_A A 47 ? A 56 ? 19 1  
1 A C 48 1_555 A G 55 1_555 0.220  -0.347 -0.063 5.358   -14.653 -0.146  21 A_C48:G55_A A 48 ? A 55 ? 19 1  
1 A A 49 1_555 A U 54 1_555 0.323  -0.215 0.338  8.810   4.058   5.160   22 A_A49:U54_A A 49 ? A 54 ? 20 1  
1 A G 50 1_555 A A 53 1_555 7.871  -5.985 0.595  26.606  -4.191  -40.929 23 A_G50:A53_A A 50 ? A 53 ? ?  ?  
1 A G 21 1_555 A C 31 1_555 -0.345 -0.196 0.051  -5.312  -5.293  -3.158  24 A_G21:C31_A A 21 ? A 31 ? 19 1  
1 A G 22 1_555 A C 30 1_555 -0.043 -0.054 -0.079 -7.682  -2.684  2.221   25 A_G22:C30_A A 22 ? A 30 ? 19 1  
1 A G 23 1_555 A C 29 1_555 -0.110 -0.161 0.418  9.418   1.082   -2.500  26 A_G23:C29_A A 23 ? A 29 ? 19 1  
1 A C 65 1_555 A G 28 1_555 -0.225 -0.160 -0.095 15.171  -22.829 -4.189  27 A_C65:G28_A A 65 ? A 28 ? 19 1  
1 A C 66 1_555 A G 27 1_555 0.326  -0.137 0.247  6.300   -26.487 2.848   28 A_C66:G27_A A 66 ? A 27 ? 19 1  
1 A U 67 1_555 A U 26 1_555 2.728  -2.068 0.211  -2.647  -26.789 14.873  29 A_U67:U26_A A 67 ? A 26 ? 16 1  
1 A G 68 1_555 A C 25 1_555 -0.310 -0.146 0.061  -7.773  -28.799 4.449   30 A_G68:C25_A A 68 ? A 25 ? 19 1  
1 A C 69 1_555 A G 82 1_555 0.048  -0.075 0.233  -6.045  -7.168  2.491   31 A_C69:G82_A A 69 ? A 82 ? 19 1  
1 A A 70 1_555 A U 81 1_555 -0.084 -0.043 -0.057 -2.345  -13.374 -1.235  32 A_A70:U81_A A 70 ? A 81 ? 20 1  
1 A G 71 1_555 A U 80 1_555 -2.407 -0.575 0.242  3.025   -15.248 1.994   33 A_G71:U80_A A 71 ? A 80 ? 28 1  
1 A C 72 1_555 A G 79 1_555 0.061  -0.243 0.261  6.327   -22.221 -0.968  34 A_C72:G79_A A 72 ? A 79 ? 19 1  
1 A G 73 1_555 A C 78 1_555 -0.080 -0.221 0.018  1.451   -1.521  0.570   35 A_G73:C78_A A 73 ? A 78 ? 19 1  
1 A G 74 1_555 A A 77 1_555 6.957  -5.203 1.123  5.602   -6.433  -15.040 36 A_G74:A77_A A 74 ? A 77 ? ?  ?  
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G 1  1_555 A C 93 1_555 A G 2  1_555 A C 92 1_555 0.517  -1.899 3.154 -1.511  7.795  32.548 -4.447 -1.121  2.616  13.656 2.647 
33.477  1  AA_G1G2:C92C93_AA   A 1  ? A 93 ? A 2  ? A 92 ? 
1 A G 2  1_555 A C 92 1_555 A C 3  1_555 A G 91 1_555 -1.126 -2.178 3.034 -0.749  0.657  29.389 -4.420 2.070   3.013  1.294  1.475 
29.406  2  AA_G2C3:G91C92_AA   A 2  ? A 92 ? A 3  ? A 91 ? 
1 A C 3  1_555 A G 91 1_555 A U 4  1_555 A A 90 1_555 -0.091 -1.732 3.690 -3.699  20.232 26.550 -6.227 -0.431  1.925  37.689 6.891 
33.471  3  AA_C3U4:A90G91_AA   A 3  ? A 91 ? A 4  ? A 90 ? 
1 A U 4  1_555 A A 90 1_555 A U 5  1_555 A G 89 1_555 -0.177 -0.606 3.003 1.870   10.421 40.960 -1.798 0.418   2.764  14.599 
-2.619  42.249  4  AA_U4U5:G89A90_AA   A 4  ? A 90 ? A 5  ? A 89 ? 
1 A U 5  1_555 A G 89 1_555 A A 6  1_555 A U 88 1_555 -0.380 -1.255 2.933 4.029   11.806 23.490 -5.224 1.677   1.993  26.718 
-9.118  26.556  5  AA_U5A6:U88G89_AA   A 5  ? A 89 ? A 6  ? A 88 ? 
1 A A 6  1_555 A U 88 1_555 A U 7  1_555 A A 87 1_555 0.231  -1.483 3.708 -4.190  16.659 27.669 -5.609 -1.158  2.396  31.303 7.873 
32.479  6  AA_A6U7:A87U88_AA   A 6  ? A 88 ? A 7  ? A 87 ? 
1 A U 7  1_555 A A 87 1_555 A C 8  1_555 A G 86 1_555 -0.280 -0.703 2.903 5.875   3.474  38.940 -1.396 1.017   2.764  5.163  
-8.731  39.510  7  AA_U7C8:G86A87_AA   A 7  ? A 87 ? A 8  ? A 86 ? 
1 A C 8  1_555 A G 86 1_555 A U 64 1_555 A A 85 1_555 -0.931 -1.489 3.475 -4.009  10.553 37.420 -3.526 0.901   3.041  16.008 6.082 
39.028  8  AA_C8U64:A85G86_AA  A 8  ? A 86 ? A 64 ? A 85 ? 
1 A G 35 1_555 A A 20 1_555 A A 36 1_555 A A 19 1_555 -1.995 -1.566 4.509 -11.335 -4.885 -5.775 11.060 -18.756 -0.304 25.734 
-59.711 -13.623 9  AA_G35A36:A19A20_AA A 35 ? A 20 ? A 36 ? A 19 ? 
1 A A 36 1_555 A A 19 1_555 A A 37 1_555 A G 18 1_555 -0.577 -0.580 3.005 -13.785 -1.454 27.236 -0.822 -1.563  2.973  -2.864 
27.157  30.501  10 AA_A36A37:G18A19_AA A 36 ? A 19 ? A 37 ? A 18 ? 
1 A A 37 1_555 A G 18 1_555 A A 38 1_555 A U 17 1_555 0.122  -0.579 3.153 -3.774  6.060  55.314 -0.953 -0.339  3.065  6.498  4.047 
55.736  11 AA_A37A38:U17G18_AA A 37 ? A 18 ? A 38 ? A 17 ? 
1 A A 38 1_555 A U 17 1_555 A C 39 1_555 A G 16 1_555 -0.295 -1.506 3.386 -5.105  7.842  40.466 -2.960 -0.127  3.068  11.158 7.264 
41.489  12 AA_A38C39:G16U17_AA A 38 ? A 17 ? A 39 ? A 16 ? 
1 A C 39 1_555 A G 16 1_555 A C 40 1_555 A G 15 1_555 -0.484 -2.166 3.359 0.092   9.839  30.322 -5.611 0.898   2.547  18.216 
-0.170  31.843  13 AA_C39C40:G15G16_AA A 39 ? A 16 ? A 40 ? A 15 ? 
1 A C 40 1_555 A G 15 1_555 A C 41 1_555 A G 13 1_555 1.025  -2.182 2.984 -4.594  5.152  35.260 -4.163 -2.218  2.502  8.405  7.495 
35.908  14 AA_C40C41:G13G15_AA A 40 ? A 15 ? A 41 ? A 13 ? 
1 A C 41 1_555 A G 13 1_555 A G 42 1_555 A C 60 1_555 2.489  -1.654 3.548 1.168   5.811  51.142 -2.328 -2.782  3.406  6.706  
-1.348  51.461  15 AA_C41G42:C60G13_AA A 41 ? A 13 ? A 42 ? A 60 ? 
1 A G 42 1_555 A C 60 1_555 A G 43 1_555 A C 59 1_555 0.560  -1.421 3.599 -2.067  6.194  36.947 -3.070 -1.159  3.292  9.680  3.231 
37.500  16 AA_G42G43:C59C60_AA A 42 ? A 60 ? A 43 ? A 59 ? 
1 A G 43 1_555 A C 59 1_555 A C 44 1_555 A G 58 1_555 -0.625 -1.155 3.205 -3.133  3.519  38.535 -2.155 0.569   3.131  5.307  4.725 
38.811  17 AA_G43C44:G58C59_AA A 43 ? A 59 ? A 44 ? A 58 ? 
1 A C 44 1_555 A G 58 1_555 A C 47 1_555 A G 56 1_555 -3.156 -3.515 5.730 6.020   11.064 79.320 -3.216 2.715   5.077  8.617  
-4.689  80.151  18 AA_C44C47:G56G58_AA A 44 ? A 58 ? A 47 ? A 56 ? 
1 A C 47 1_555 A G 56 1_555 A C 48 1_555 A G 55 1_555 -0.222 -1.956 3.440 -1.359  6.696  32.890 -4.479 0.162   3.001  11.670 2.369 
33.573  19 AA_C47C48:G55G56_AA A 47 ? A 56 ? A 48 ? A 55 ? 
1 A C 48 1_555 A G 55 1_555 A A 49 1_555 A U 54 1_555 0.151  -1.726 3.066 -4.597  4.407  33.042 -3.632 -0.938  2.774  7.660  7.990 
33.633  20 AA_C48A49:U54G55_AA A 48 ? A 55 ? A 49 ? A 54 ? 
1 A A 49 1_555 A U 54 1_555 A G 50 1_555 A A 53 1_555 -3.684 -1.307 2.915 1.011   4.073  57.781 -1.538 3.851   2.766  4.209  
-1.045  57.921  21 AA_A49G50:A53U54_AA A 49 ? A 54 ? A 50 ? A 53 ? 
1 A G 21 1_555 A C 31 1_555 A G 22 1_555 A C 30 1_555 0.510  -2.203 3.239 3.182   2.585  33.684 -4.179 -0.377  3.100  4.441  
-5.465  33.925  22 AA_G21G22:C30C31_AA A 21 ? A 31 ? A 22 ? A 30 ? 
1 A G 22 1_555 A C 30 1_555 A G 23 1_555 A C 29 1_555 -0.342 -2.383 2.811 -1.827  -2.112 24.046 -5.083 0.296   3.023  -5.048 4.367 
24.205  23 AA_G22G23:C29C30_AA A 22 ? A 30 ? A 23 ? A 29 ? 
1 A G 23 1_555 A C 29 1_555 A C 65 1_555 A G 28 1_555 -2.203 -0.761 3.190 2.249   -2.030 46.397 -0.799 2.973   3.115  -2.573 
-2.851  46.490  24 AA_G23C65:G28C29_AA A 23 ? A 29 ? A 65 ? A 28 ? 
1 A C 65 1_555 A G 28 1_555 A C 66 1_555 A G 27 1_555 -0.416 -1.582 3.363 -3.603  12.143 33.392 -4.267 0.181   2.674  20.250 6.008 
35.650  25 AA_C65C66:G27G28_AA A 65 ? A 28 ? A 66 ? A 27 ? 
1 A C 66 1_555 A G 27 1_555 A U 67 1_555 A U 26 1_555 0.620  -0.221 3.540 6.159   11.675 46.784 -1.251 -0.237  3.446  14.371 
-7.581  48.510  26 AA_C66U67:U26G27_AA A 66 ? A 27 ? A 67 ? A 26 ? 
1 A U 67 1_555 A U 26 1_555 A G 68 1_555 A C 25 1_555 -0.140 -0.443 2.989 7.877   24.035 28.820 -3.333 1.085   1.973  39.948 
-13.092 38.167  27 AA_U67G68:C25U26_AA A 67 ? A 26 ? A 68 ? A 25 ? 
1 A C 69 1_555 A G 82 1_555 A A 70 1_555 A U 81 1_555 -0.354 -1.271 3.010 0.593   7.406  31.710 -3.400 0.722   2.647  13.326 
-1.067  32.547  28 AA_C69A70:U81G82_AA A 69 ? A 82 ? A 70 ? A 81 ? 
1 A A 70 1_555 A U 81 1_555 A G 71 1_555 A U 80 1_555 -0.048 -1.567 2.965 -4.768  6.866  23.964 -5.243 -1.052  2.395  15.928 
11.061  25.360  29 AA_A70G71:U80U81_AA A 70 ? A 81 ? A 71 ? A 80 ? 
1 A G 71 1_555 A U 80 1_555 A C 72 1_555 A G 79 1_555 -0.077 -1.124 3.063 -3.659  8.653  41.281 -2.359 -0.232  2.779  12.086 5.110 
42.291  30 AA_G71C72:G79U80_AA A 71 ? A 80 ? A 72 ? A 79 ? 
1 A C 72 1_555 A G 79 1_555 A G 73 1_555 A C 78 1_555 0.097  -1.889 3.383 -1.902  7.129  31.269 -4.657 -0.506  2.883  13.001 3.468 
32.106  31 AA_C72G73:C78G79_AA A 72 ? A 79 ? A 73 ? A 78 ? 
1 A G 73 1_555 A C 78 1_555 A G 74 1_555 A A 77 1_555 -2.432 -1.189 3.053 -1.913  13.077 54.973 -1.928 2.475   2.802  13.942 2.039 
56.418  32 AA_G73G74:A77C78_AA A 73 ? A 78 ? A 74 ? A 77 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 S-ADENOSYLMETHIONINE SAM 
3 'SODIUM ION'         NA  
4 'POTASSIUM ION'      K   
5 water                HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   3GX5 
_pdbx_initial_refinement_model.details          'PDB ENTRY 3GX5' 
#