HEADER HYDROLASE 18-APR-11 2YGL TITLE THE X-RAY CRYSTAL STRUCTURE OF TANDEM CBM51 MODULES OF SP3GH98, THE TITLE 2 FAMILY 98 GLYCOSIDE HYDROLASE FROM STREPTOCOCCUS PNEUMONIAE SP3-BS71 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLOOD GROUP A-AND B-CLEAVING ENDO-BETA-GALACTOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CBM51-1.2, RESIDUES 66-413; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: TANDEM FAMILY 51 CBMS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 406556; SOURCE 4 STRAIN: SP3-BS71; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS HYDROLASE, CARBOHYDRATE-BINDING MODULE, BLOOD GROUP ANTIGEN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.HIGGINS,E.FICKO-BLEAN,C.WRIGHT,P.J.MELONCELLI,T.L.LOWARY, AUTHOR 2 A.B.BORASTON REVDAT 4 20-DEC-23 2YGL 1 REMARK LINK REVDAT 3 24-AUG-11 2YGL 1 JRNL REVDAT 2 27-JUL-11 2YGL 1 JRNL REMARK VERSN REVDAT 1 22-JUN-11 2YGL 0 JRNL AUTH M.A.HIGGINS,E.FICKO-BLEAN,C.WRIGHT,P.J.MELONCELLI, JRNL AUTH 2 T.L.LOWARY,A.B.BORASTON JRNL TITL THE OVERALL ARCHITECTURE AND RECEPTOR BINDING OF JRNL TITL 2 PNEUMOCOCCAL CARBOHYDRATE ANTIGEN HYDROLYZING ENZYMES. JRNL REF J.MOL.BIOL. V. 411 1017 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21767550 JRNL DOI 10.1016/J.JMB.2011.06.035 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 46386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5403 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 622 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.035 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5515 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7470 ; 0.931 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 701 ; 5.501 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;37.701 ;25.868 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 951 ;12.168 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.167 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 842 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4134 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3470 ; 0.332 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5617 ; 0.619 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2045 ; 0.699 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1852 ; 1.223 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2YGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-11. REMARK 100 THE DEPOSITION ID IS D_1290048062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97607 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46386 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VNR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.02000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.92500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.92500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.02000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 GLY A 413 REMARK 465 GLY B 60 REMARK 465 SER B 61 REMARK 465 ASN B 412 REMARK 465 GLY B 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 232 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 108 -166.37 -102.31 REMARK 500 ASP A 125 -141.26 -136.13 REMARK 500 SER A 307 -135.01 -140.46 REMARK 500 LYS A 395 -10.76 75.87 REMARK 500 ASP B 125 -137.27 -140.12 REMARK 500 VAL B 231 68.04 -113.87 REMARK 500 THR B 233 -156.90 -79.93 REMARK 500 SER B 307 -139.31 -131.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2051 DISTANCE = 6.72 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1413 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 161 O REMARK 620 2 ALA A 211 O 83.8 REMARK 620 3 HIS A 214 O 170.9 87.5 REMARK 620 4 ASP A 218 OD1 74.5 130.1 109.4 REMARK 620 5 ASP A 218 OD2 96.1 94.1 81.7 46.1 REMARK 620 6 HOH A2121 O 106.2 164.7 82.8 64.7 96.1 REMARK 620 7 HOH A2124 O 95.7 83.9 86.1 141.6 167.8 83.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1412 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 161 O REMARK 620 2 ALA B 211 O 82.2 REMARK 620 3 HIS B 214 O 165.5 83.8 REMARK 620 4 ASP B 218 OD2 94.2 94.6 83.2 REMARK 620 5 ASP B 218 OD1 75.8 132.0 111.4 46.3 REMARK 620 6 HOH B2100 O 106.8 161.1 87.7 101.1 66.9 REMARK 620 7 HOH B2105 O 93.8 83.6 88.4 171.5 139.2 79.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1412 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YGM RELATED DB: PDB REMARK 900 THE X-RAY CRYSTAL STRUCTURE OF TANDEM CBM51 MODULES OF SP3GH98, THE REMARK 900 FAMILY 98 GLYCOSIDE HYDROLASE FROM STREPTOCOCCUS PNEUMONIAE SP3- REMARK 900 BS71, IN COMPLEX WITH THE BLOOD GROUP B ANTIGEN DBREF 2YGL A 66 413 UNP C1CB04 C1CB04_STRP7 66 413 DBREF 2YGL B 66 413 UNP C1CB04 C1CB04_STRP7 66 413 SEQADV 2YGL GLY A 60 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL SER A 61 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL HIS A 62 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL MET A 63 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL ALA A 64 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL SER A 65 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL GLY B 60 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL SER B 61 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL HIS B 62 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL MET B 63 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL ALA B 64 UNP C1CB04 EXPRESSION TAG SEQADV 2YGL SER B 65 UNP C1CB04 EXPRESSION TAG SEQRES 1 A 354 GLY SER HIS MET ALA SER THR TYR LEU SER ASP MET ASP SEQRES 2 A 354 TRP SER SER ALA THR HIS GLY ASP ILE ASP LYS THR LYS SEQRES 3 A 354 THR VAL GLN LYS ASP ALA PRO PHE THR THR GLY ASN LYS SEQRES 4 A 354 GLY GLU HIS THR LYS ILE SER LEU LEU THR SER ASP ASP SEQRES 5 A 354 LYS VAL LYS TYR PHE ASP LYS GLY ILE GLY THR VAL ALA SEQRES 6 A 354 ASP SER PRO SER VAL ILE SER TYR ASP ILE SER GLY GLN SEQRES 7 A 354 GLY PHE GLU LYS PHE GLU THR TYR ILE GLY ILE ASP GLN SEQRES 8 A 354 SER ALA ASN SER SER ARG SER ASP HIS ALA VAL VAL ASP SEQRES 9 A 354 ARG ILE GLU ILE GLU ILE ASP GLY LYS VAL VAL TYR SER SEQRES 10 A 354 SER SER VAL THR ASN PRO GLU GLY PHE ARG TYR ASN THR SEQRES 11 A 354 GLN ALA GLN PHE ILE SER VAL THR ILE PRO GLN ASN ALA SEQRES 12 A 354 LYS LYS ILE SER LEU LYS SER PHE ALA GLY GLU HIS THR SEQRES 13 A 354 TRP GLY ASP GLU VAL VAL PHE ALA ASP ALA LYS LEU ILE SEQRES 14 A 354 LYS THR VAL SER THR GLN THR ILE THR PRO ASP LEU LEU SEQRES 15 A 354 ASN LYS GLY ILE ASN GLY GLY VAL TYR LEU SER ASP LEU SEQRES 16 A 354 GLU TRP VAL ASP ALA THR HIS GLY ASP ASP ASP LYS SER SEQRES 17 A 354 LYS THR VAL GLN LYS ASP LYS PRO PHE THR PRO GLY ASN SEQRES 18 A 354 ASN GLY SER ASN ASN LYS ILE LYS LEU LEU ILE ASP GLY SEQRES 19 A 354 LYS GLU VAL GLU PHE ASN LYS GLY LEU GLY THR VAL ALA SEQRES 20 A 354 SER ASN PRO SER SER ILE LYS TYR ASP VAL SER GLY ALA SEQRES 21 A 354 ASN VAL THR ARG PHE ILE SER TYR VAL GLY ILE ASP ARG SEQRES 22 A 354 SER ALA ASN HIS LEU ASN SER ASP TYR ALA ASP ILE GLN SEQRES 23 A 354 LYS PHE GLU VAL VAL ALA ASP GLY LYS VAL ILE TYR SER SEQRES 24 A 354 SER ASP SER LYS TYR PRO LYS GLY ILE LYS TYR ASP THR SEQRES 25 A 354 SER ALA PHE LEU VAL ASP VAL GLU ILE PRO LYS ASP THR SEQRES 26 A 354 GLN THR ILE GLU LEU LYS SER TYR SER GLY LYS HIS THR SEQRES 27 A 354 TRP ALA ASP GLU LEU VAL LEU GLY GLY ALA LEU PHE MET SEQRES 28 A 354 ALA ASN GLY SEQRES 1 B 354 GLY SER HIS MET ALA SER THR TYR LEU SER ASP MET ASP SEQRES 2 B 354 TRP SER SER ALA THR HIS GLY ASP ILE ASP LYS THR LYS SEQRES 3 B 354 THR VAL GLN LYS ASP ALA PRO PHE THR THR GLY ASN LYS SEQRES 4 B 354 GLY GLU HIS THR LYS ILE SER LEU LEU THR SER ASP ASP SEQRES 5 B 354 LYS VAL LYS TYR PHE ASP LYS GLY ILE GLY THR VAL ALA SEQRES 6 B 354 ASP SER PRO SER VAL ILE SER TYR ASP ILE SER GLY GLN SEQRES 7 B 354 GLY PHE GLU LYS PHE GLU THR TYR ILE GLY ILE ASP GLN SEQRES 8 B 354 SER ALA ASN SER SER ARG SER ASP HIS ALA VAL VAL ASP SEQRES 9 B 354 ARG ILE GLU ILE GLU ILE ASP GLY LYS VAL VAL TYR SER SEQRES 10 B 354 SER SER VAL THR ASN PRO GLU GLY PHE ARG TYR ASN THR SEQRES 11 B 354 GLN ALA GLN PHE ILE SER VAL THR ILE PRO GLN ASN ALA SEQRES 12 B 354 LYS LYS ILE SER LEU LYS SER PHE ALA GLY GLU HIS THR SEQRES 13 B 354 TRP GLY ASP GLU VAL VAL PHE ALA ASP ALA LYS LEU ILE SEQRES 14 B 354 LYS THR VAL SER THR GLN THR ILE THR PRO ASP LEU LEU SEQRES 15 B 354 ASN LYS GLY ILE ASN GLY GLY VAL TYR LEU SER ASP LEU SEQRES 16 B 354 GLU TRP VAL ASP ALA THR HIS GLY ASP ASP ASP LYS SER SEQRES 17 B 354 LYS THR VAL GLN LYS ASP LYS PRO PHE THR PRO GLY ASN SEQRES 18 B 354 ASN GLY SER ASN ASN LYS ILE LYS LEU LEU ILE ASP GLY SEQRES 19 B 354 LYS GLU VAL GLU PHE ASN LYS GLY LEU GLY THR VAL ALA SEQRES 20 B 354 SER ASN PRO SER SER ILE LYS TYR ASP VAL SER GLY ALA SEQRES 21 B 354 ASN VAL THR ARG PHE ILE SER TYR VAL GLY ILE ASP ARG SEQRES 22 B 354 SER ALA ASN HIS LEU ASN SER ASP TYR ALA ASP ILE GLN SEQRES 23 B 354 LYS PHE GLU VAL VAL ALA ASP GLY LYS VAL ILE TYR SER SEQRES 24 B 354 SER ASP SER LYS TYR PRO LYS GLY ILE LYS TYR ASP THR SEQRES 25 B 354 SER ALA PHE LEU VAL ASP VAL GLU ILE PRO LYS ASP THR SEQRES 26 B 354 GLN THR ILE GLU LEU LYS SER TYR SER GLY LYS HIS THR SEQRES 27 B 354 TRP ALA ASP GLU LEU VAL LEU GLY GLY ALA LEU PHE MET SEQRES 28 B 354 ALA ASN GLY HET CA A1413 1 HET CA B1412 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *622(H2 O) HELIX 1 1 SER A 69 MET A 71 5 3 HELIX 2 2 PRO A 92 GLY A 99 1 8 HELIX 3 3 SER A 109 ASP A 111 5 3 HELIX 4 4 THR A 237 GLY A 244 1 8 HELIX 5 5 SER A 252 LEU A 254 5 3 HELIX 6 6 PRO A 275 ASN A 281 1 7 HELIX 7 7 SER B 69 MET B 71 5 3 HELIX 8 8 PRO B 92 LYS B 98 1 7 HELIX 9 9 SER B 109 ASP B 111 5 3 HELIX 10 10 THR B 237 GLY B 244 1 8 HELIX 11 11 SER B 252 LEU B 254 5 3 HELIX 12 12 PRO B 275 ASN B 281 1 7 SHEET 1 AA 2 MET A 63 TYR A 67 0 SHEET 2 AA 2 GLU A 219 THR A 230 1 O LEU A 227 N THR A 66 SHEET 1 AB 5 GLN A 88 LYS A 89 0 SHEET 2 AB 5 GLY A 119 VAL A 123 -1 O GLY A 121 N GLN A 88 SHEET 3 AB 5 GLU A 219 THR A 230 -1 O VAL A 220 N THR A 122 SHEET 4 AB 5 LYS A 141 ILE A 148 -1 O LYS A 141 N ILE A 228 SHEET 5 AB 5 GLN A 192 THR A 197 -1 O GLN A 192 N ILE A 146 SHEET 1 AC 4 GLN A 88 LYS A 89 0 SHEET 2 AC 4 GLY A 119 VAL A 123 -1 O GLY A 121 N GLN A 88 SHEET 3 AC 4 GLU A 219 THR A 230 -1 O VAL A 220 N THR A 122 SHEET 4 AC 4 MET A 63 TYR A 67 1 O ALA A 64 N LYS A 229 SHEET 1 AD 5 SER A 75 ALA A 76 0 SHEET 2 AD 5 SER A 128 ASP A 133 -1 N SER A 131 O SER A 75 SHEET 3 AD 5 LYS A 204 PHE A 210 -1 O ILE A 205 N TYR A 132 SHEET 4 AD 5 ARG A 164 ILE A 169 -1 O ARG A 164 N PHE A 210 SHEET 5 AD 5 LYS A 172 SER A 176 -1 O LYS A 172 N ILE A 169 SHEET 1 AE 2 ILE A 104 LEU A 107 0 SHEET 2 AE 2 VAL A 113 PHE A 116 -1 O LYS A 114 N LEU A 106 SHEET 1 AF 2 GLY A 248 TYR A 250 0 SHEET 2 AF 2 LEU A 402 ALA A 411 1 O PHE A 409 N VAL A 249 SHEET 1 AG 5 GLN A 271 LYS A 272 0 SHEET 2 AG 5 GLY A 301 GLY A 303 -1 O GLY A 303 N GLN A 271 SHEET 3 AG 5 LEU A 402 ALA A 411 -1 O LEU A 404 N LEU A 302 SHEET 4 AG 5 VAL A 321 ILE A 330 -1 N THR A 322 O MET A 410 SHEET 5 AG 5 PHE A 374 GLU A 379 -1 O PHE A 374 N VAL A 328 SHEET 1 AH 4 GLN A 271 LYS A 272 0 SHEET 2 AH 4 GLY A 301 GLY A 303 -1 O GLY A 303 N GLN A 271 SHEET 3 AH 4 LEU A 402 ALA A 411 -1 O LEU A 404 N LEU A 302 SHEET 4 AH 4 GLY A 248 TYR A 250 1 O VAL A 249 N PHE A 409 SHEET 1 AI 5 ASP A 258 ALA A 259 0 SHEET 2 AI 5 SER A 310 ASP A 315 -1 N LYS A 313 O ASP A 258 SHEET 3 AI 5 THR A 386 SER A 393 -1 O ILE A 387 N TYR A 314 SHEET 4 AI 5 ILE A 344 ALA A 351 -1 N GLN A 345 O TYR A 392 SHEET 5 AI 5 LYS A 354 SER A 358 -1 O LYS A 354 N ALA A 351 SHEET 1 AJ 2 ILE A 287 ILE A 291 0 SHEET 2 AJ 2 LYS A 294 PHE A 298 -1 O LYS A 294 N ILE A 291 SHEET 1 BA 2 MET B 63 TYR B 67 0 SHEET 2 BA 2 VAL B 220 THR B 230 1 O LEU B 227 N THR B 66 SHEET 1 BB 5 GLN B 88 LYS B 89 0 SHEET 2 BB 5 GLY B 119 GLY B 121 -1 O GLY B 121 N GLN B 88 SHEET 3 BB 5 VAL B 220 THR B 230 -1 O PHE B 222 N ILE B 120 SHEET 4 BB 5 LYS B 141 ILE B 148 -1 O LYS B 141 N ILE B 228 SHEET 5 BB 5 GLN B 192 THR B 197 -1 O GLN B 192 N ILE B 146 SHEET 1 BC 4 GLN B 88 LYS B 89 0 SHEET 2 BC 4 GLY B 119 GLY B 121 -1 O GLY B 121 N GLN B 88 SHEET 3 BC 4 VAL B 220 THR B 230 -1 O PHE B 222 N ILE B 120 SHEET 4 BC 4 MET B 63 TYR B 67 1 O ALA B 64 N LYS B 229 SHEET 1 BD 5 SER B 75 ALA B 76 0 SHEET 2 BD 5 SER B 128 ASP B 133 -1 N SER B 131 O SER B 75 SHEET 3 BD 5 LYS B 204 PHE B 210 -1 O ILE B 205 N TYR B 132 SHEET 4 BD 5 ARG B 164 ILE B 169 -1 O ARG B 164 N PHE B 210 SHEET 5 BD 5 LYS B 172 SER B 176 -1 O LYS B 172 N ILE B 169 SHEET 1 BE 2 ILE B 104 LEU B 107 0 SHEET 2 BE 2 VAL B 113 PHE B 116 -1 O LYS B 114 N LEU B 106 SHEET 1 BF 2 GLY B 248 TYR B 250 0 SHEET 2 BF 2 GLU B 401 MET B 410 1 O PHE B 409 N VAL B 249 SHEET 1 BG 5 GLN B 271 LYS B 272 0 SHEET 2 BG 5 GLY B 301 VAL B 305 -1 O GLY B 303 N GLN B 271 SHEET 3 BG 5 GLU B 401 MET B 410 -1 O LEU B 402 N THR B 304 SHEET 4 BG 5 ARG B 323 GLY B 329 -1 O ARG B 323 N MET B 410 SHEET 5 BG 5 PHE B 374 GLU B 379 -1 O PHE B 374 N VAL B 328 SHEET 1 BH 4 GLN B 271 LYS B 272 0 SHEET 2 BH 4 GLY B 301 VAL B 305 -1 O GLY B 303 N GLN B 271 SHEET 3 BH 4 GLU B 401 MET B 410 -1 O LEU B 402 N THR B 304 SHEET 4 BH 4 GLY B 248 TYR B 250 1 O VAL B 249 N PHE B 409 SHEET 1 BI 5 ASP B 258 ALA B 259 0 SHEET 2 BI 5 SER B 310 ASP B 315 -1 N LYS B 313 O ASP B 258 SHEET 3 BI 5 THR B 386 SER B 393 -1 O ILE B 387 N TYR B 314 SHEET 4 BI 5 ILE B 344 ALA B 351 -1 N GLN B 345 O TYR B 392 SHEET 5 BI 5 LYS B 354 SER B 358 -1 O LYS B 354 N ALA B 351 SHEET 1 BJ 2 ILE B 287 ILE B 291 0 SHEET 2 BJ 2 LYS B 294 PHE B 298 -1 O LYS B 294 N ILE B 291 LINK O VAL A 161 CA CA A1413 1555 1555 2.16 LINK O ALA A 211 CA CA A1413 1555 1555 2.29 LINK O HIS A 214 CA CA A1413 1555 1555 2.18 LINK OD1 ASP A 218 CA CA A1413 1555 1555 3.03 LINK OD2 ASP A 218 CA CA A1413 1555 1555 2.31 LINK CA CA A1413 O HOH A2121 1555 1555 2.39 LINK CA CA A1413 O HOH A2124 1555 1555 2.26 LINK O VAL B 161 CA CA B1412 1555 1555 2.14 LINK O ALA B 211 CA CA B1412 1555 1555 2.32 LINK O HIS B 214 CA CA B1412 1555 1555 2.19 LINK OD2 ASP B 218 CA CA B1412 1555 1555 2.22 LINK OD1 ASP B 218 CA CA B1412 1555 1555 3.03 LINK CA CA B1412 O HOH B2100 1555 1555 2.42 LINK CA CA B1412 O HOH B2105 1555 1555 2.33 CISPEP 1 SER A 126 PRO A 127 0 -3.31 CISPEP 2 ASN A 308 PRO A 309 0 0.27 CISPEP 3 SER B 126 PRO B 127 0 -0.55 CISPEP 4 ASN B 308 PRO B 309 0 -3.47 SITE 1 AC1 6 VAL A 161 ALA A 211 HIS A 214 ASP A 218 SITE 2 AC1 6 HOH A2121 HOH A2124 SITE 1 AC2 6 VAL B 161 ALA B 211 HIS B 214 ASP B 218 SITE 2 AC2 6 HOH B2100 HOH B2105 CRYST1 76.040 90.580 119.850 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008344 0.00000