data_2YGO # _entry.id 2YGO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YGO PDBE EBI-48076 WWPDB D_1290048076 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2YGQ unspecified ;WIF DOMAIN-EPIDERMAL GROWTH FACTOR (EGF)-LIKE DOMAINS 1-3 OF HUMAN WNT INHIBITORY FACTOR 1 IN COMPLEX WITH 1,2-DIPALMITOYLPHOSPHATIDYLCHOLINE ; PDB 2YGP unspecified 'WIF DOMAIN-EGF-LIKE DOMAIN 1 MET77TRP OF HUMAN WNT INHIBITORY FACTOR 1 IN COMPLEX WITH 1,2- DIPALMITOYLPHOSPHATIDYLCHOLINE' PDB 2YGN unspecified 'WIF DOMAIN OF HUMAN WNT INHIBITORY FACTOR 1 IN COMPLEX WITH 1,2-DIPALMITOYLPHOSPHATIDYLCHOLINE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YGO _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-04-19 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Malinauskas, T.' 1 'Aricescu, A.R.' 2 'Lu, W.' 3 'Siebold, C.' 4 'Jones, E.Y.' 5 # _citation.id primary _citation.title 'Modular Mechanism of Wnt Signaling Inhibition by Wnt Inhibitory Factor 1' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 18 _citation.page_first 886 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21743455 _citation.pdbx_database_id_DOI 10.1038/NSMB.2081 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Malinauskas, T.' 1 ? primary 'Aricescu, A.R.' 2 ? primary 'Lu, W.' 3 ? primary 'Siebold, C.' 4 ? primary 'Jones, E.Y.' 5 ? # _cell.entry_id 2YGO _cell.length_a 50.996 _cell.length_b 134.260 _cell.length_c 60.403 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YGO _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'WNT INHIBITORY FACTOR 1' 21076.068 1 ? ? 'WIF DOMAIN-EGF-LIKE DOMAIN 1, RESIDUES 35-210' ? 2 non-polymer syn 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE 734.039 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 151 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name WIF-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;ETGSLYLWIDAHQARVLIGFEEDILIVSEG(MLY)MAPFTHDFR(MLY)AQQRMPAIPVNIHSMNFTWQAAGQAEYFYEF LSLRSLD(MLY)GIMADPTVNVPLLGTVPH(MLY)ASVVQVGFPCLG(MLY)QDGVAAFEVDVIVMNSEGNTIL(MLY)T PQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEGTKHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;ETGSLYLWIDAHQARVLIGFEEDILIVSEGKMAPFTHDFRKAQQRMPAIPVNIHSMNFTWQAAGQAEYFYEFLSLRSLDK GIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGF CNERRICECPDGFHGPHCEGTKHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 GLY n 1 4 SER n 1 5 LEU n 1 6 TYR n 1 7 LEU n 1 8 TRP n 1 9 ILE n 1 10 ASP n 1 11 ALA n 1 12 HIS n 1 13 GLN n 1 14 ALA n 1 15 ARG n 1 16 VAL n 1 17 LEU n 1 18 ILE n 1 19 GLY n 1 20 PHE n 1 21 GLU n 1 22 GLU n 1 23 ASP n 1 24 ILE n 1 25 LEU n 1 26 ILE n 1 27 VAL n 1 28 SER n 1 29 GLU n 1 30 GLY n 1 31 MLY n 1 32 MET n 1 33 ALA n 1 34 PRO n 1 35 PHE n 1 36 THR n 1 37 HIS n 1 38 ASP n 1 39 PHE n 1 40 ARG n 1 41 MLY n 1 42 ALA n 1 43 GLN n 1 44 GLN n 1 45 ARG n 1 46 MET n 1 47 PRO n 1 48 ALA n 1 49 ILE n 1 50 PRO n 1 51 VAL n 1 52 ASN n 1 53 ILE n 1 54 HIS n 1 55 SER n 1 56 MET n 1 57 ASN n 1 58 PHE n 1 59 THR n 1 60 TRP n 1 61 GLN n 1 62 ALA n 1 63 ALA n 1 64 GLY n 1 65 GLN n 1 66 ALA n 1 67 GLU n 1 68 TYR n 1 69 PHE n 1 70 TYR n 1 71 GLU n 1 72 PHE n 1 73 LEU n 1 74 SER n 1 75 LEU n 1 76 ARG n 1 77 SER n 1 78 LEU n 1 79 ASP n 1 80 MLY n 1 81 GLY n 1 82 ILE n 1 83 MET n 1 84 ALA n 1 85 ASP n 1 86 PRO n 1 87 THR n 1 88 VAL n 1 89 ASN n 1 90 VAL n 1 91 PRO n 1 92 LEU n 1 93 LEU n 1 94 GLY n 1 95 THR n 1 96 VAL n 1 97 PRO n 1 98 HIS n 1 99 MLY n 1 100 ALA n 1 101 SER n 1 102 VAL n 1 103 VAL n 1 104 GLN n 1 105 VAL n 1 106 GLY n 1 107 PHE n 1 108 PRO n 1 109 CYS n 1 110 LEU n 1 111 GLY n 1 112 MLY n 1 113 GLN n 1 114 ASP n 1 115 GLY n 1 116 VAL n 1 117 ALA n 1 118 ALA n 1 119 PHE n 1 120 GLU n 1 121 VAL n 1 122 ASP n 1 123 VAL n 1 124 ILE n 1 125 VAL n 1 126 MET n 1 127 ASN n 1 128 SER n 1 129 GLU n 1 130 GLY n 1 131 ASN n 1 132 THR n 1 133 ILE n 1 134 LEU n 1 135 MLY n 1 136 THR n 1 137 PRO n 1 138 GLN n 1 139 ASN n 1 140 ALA n 1 141 ILE n 1 142 PHE n 1 143 PHE n 1 144 LYS n 1 145 THR n 1 146 CYS n 1 147 GLN n 1 148 GLN n 1 149 ALA n 1 150 GLU n 1 151 CYS n 1 152 PRO n 1 153 GLY n 1 154 GLY n 1 155 CYS n 1 156 ARG n 1 157 ASN n 1 158 GLY n 1 159 GLY n 1 160 PHE n 1 161 CYS n 1 162 ASN n 1 163 GLU n 1 164 ARG n 1 165 ARG n 1 166 ILE n 1 167 CYS n 1 168 GLU n 1 169 CYS n 1 170 PRO n 1 171 ASP n 1 172 GLY n 1 173 PHE n 1 174 HIS n 1 175 GLY n 1 176 PRO n 1 177 HIS n 1 178 CYS n 1 179 GLU n 1 180 GLY n 1 181 THR n 1 182 LYS n 1 183 HIS n 1 184 HIS n 1 185 HIS n 1 186 HIS n 1 187 HIS n 1 188 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name HUMAN _entity_src_gen.pdbx_host_org_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'N-ACETYLGLUCOSAMINYLTRANSFERASE I-NEGATIVE HEK 293S GNTI(-)CELLS' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PHLSEC _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code WIF1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9Y5W5 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YGO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y5W5 _struct_ref_seq.db_align_beg 35 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 210 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 35 _struct_ref_seq.pdbx_auth_seq_align_end 210 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YGO GLU A 1 ? UNP Q9Y5W5 ? ? 'expression tag' 32 1 1 2YGO THR A 2 ? UNP Q9Y5W5 ? ? 'expression tag' 33 2 1 2YGO GLY A 3 ? UNP Q9Y5W5 ? ? 'expression tag' 34 3 1 2YGO MLY A 135 ? UNP Q9Y5W5 GLN 166 variant 166 4 1 2YGO GLY A 180 ? UNP Q9Y5W5 ? ? 'expression tag' 211 5 1 2YGO THR A 181 ? UNP Q9Y5W5 ? ? 'expression tag' 212 6 1 2YGO LYS A 182 ? UNP Q9Y5W5 ? ? 'expression tag' 213 7 1 2YGO HIS A 183 ? UNP Q9Y5W5 ? ? 'expression tag' 214 8 1 2YGO HIS A 184 ? UNP Q9Y5W5 ? ? 'expression tag' 215 9 1 2YGO HIS A 185 ? UNP Q9Y5W5 ? ? 'expression tag' 216 10 1 2YGO HIS A 186 ? UNP Q9Y5W5 ? ? 'expression tag' 217 11 1 2YGO HIS A 187 ? UNP Q9Y5W5 ? ? 'expression tag' 218 12 1 2YGO HIS A 188 ? UNP Q9Y5W5 ? ? 'expression tag' 219 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PCF non-polymer . 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE ? 'C40 H80 N O8 P' 734.039 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YGO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 50 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.3 M DIAMMONIUM TARTRATE, 100 MM BIS-TRIS PROPANE PH 7.0' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'HORIZONTALLY SIDE DIFFRACTING SILICON 111 CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.873 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.873 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YGO _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 1.85 _reflns.number_obs 18293 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.50 _reflns.B_iso_Wilson_estimate 17.56 _reflns.pdbx_redundancy 7.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.99 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.94 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 7.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YGO _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17107 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.422 _refine.ls_d_res_high 1.850 _refine.ls_percent_reflns_obs 94.26 _refine.ls_R_factor_obs 0.1856 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1839 _refine.ls_R_factor_R_free 0.2168 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 886 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.27 _refine.aniso_B[1][1] 5.9344 _refine.aniso_B[2][2] -4.8759 _refine.aniso_B[3][3] -1.0585 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.346 _refine.solvent_model_param_bsol 44.411 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.72 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 20.04 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1400 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 65 _refine_hist.number_atoms_solvent 151 _refine_hist.number_atoms_total 1616 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 37.422 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.015 ? ? 1508 'X-RAY DIFFRACTION' ? f_angle_d 2.069 ? ? 2025 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.794 ? ? 584 'X-RAY DIFFRACTION' ? f_chiral_restr 0.152 ? ? 216 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 255 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.8500 1.9659 2360 0.2364 85.00 0.2787 . . 147 . . 'X-RAY DIFFRACTION' . 1.9659 2.1177 2576 0.1931 91.00 0.2638 . . 134 . . 'X-RAY DIFFRACTION' . 2.1177 2.3308 2681 0.1866 95.00 0.2320 . . 160 . . 'X-RAY DIFFRACTION' . 2.3308 2.6680 2736 0.1853 96.00 0.2269 . . 149 . . 'X-RAY DIFFRACTION' . 2.6680 3.3610 2856 0.1726 99.00 0.2168 . . 151 . . 'X-RAY DIFFRACTION' . 3.3610 37.4294 3012 0.1772 100.00 0.1831 . . 145 . . # _struct.entry_id 2YGO _struct.title 'WIF domain-EGF-like domain 1 of human Wnt inhibitory factor 1 in complex with 1,2-dipalmitoylphosphatidylcholine' _struct.pdbx_descriptor 'WNT INHIBITORY FACTOR 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YGO _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, WNT SIGNALING PATHWAY, WNT ANTAGONIST, MORPHOGEN, CANCER, GLYCOSAMINOGLYCAN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? GLY A 19 ? ASP A 41 GLY A 50 1 ? 10 HELX_P HELX_P2 2 PRO A 34 ? HIS A 37 ? PRO A 65 HIS A 68 5 ? 4 HELX_P HELX_P3 3 ASP A 38 ? ARG A 45 ? ASP A 69 ARG A 76 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 109 SG ? ? ? 1_555 A CYS 146 SG ? ? A CYS 140 A CYS 177 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf2 disulf ? ? A CYS 151 SG ? ? ? 1_555 A CYS 161 SG ? ? A CYS 182 A CYS 192 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf3 disulf ? ? A CYS 155 SG ? ? ? 1_555 A CYS 167 SG ? ? A CYS 186 A CYS 198 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf4 disulf ? ? A CYS 169 SG ? ? ? 1_555 A CYS 178 SG ? ? A CYS 200 A CYS 209 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale both ? A GLY 30 C ? ? ? 1_555 A MLY 31 N ? ? A GLY 61 A MLY 62 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale2 covale both ? A MLY 31 C ? ? ? 1_555 A MET 32 N ? ? A MLY 62 A MET 63 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale3 covale both ? A ARG 40 C ? ? ? 1_555 A MLY 41 N ? ? A ARG 71 A MLY 72 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? A MLY 41 C ? ? ? 1_555 A ALA 42 N ? ? A MLY 72 A ALA 73 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale5 covale one ? A ASN 57 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 88 A NAG 1214 1_555 ? ? ? ? ? ? ? 1.404 ? N-Glycosylation covale6 covale both ? A ASP 79 C ? ? ? 1_555 A MLY 80 N ? ? A ASP 110 A MLY 111 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale7 covale both ? A MLY 80 C ? ? ? 1_555 A GLY 81 N ? ? A MLY 111 A GLY 112 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale8 covale both ? A HIS 98 C ? ? ? 1_555 A MLY 99 N ? ? A HIS 129 A MLY 130 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale9 covale both ? A MLY 99 C ? ? ? 1_555 A ALA 100 N ? ? A MLY 130 A ALA 131 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale10 covale both ? A GLY 111 C ? ? ? 1_555 A MLY 112 N ? ? A GLY 142 A MLY 143 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale11 covale both ? A MLY 112 C ? ? ? 1_555 A GLN 113 N ? ? A MLY 143 A GLN 144 1_555 ? ? ? ? ? ? ? 1.367 ? ? covale12 covale both ? A LEU 134 C ? ? ? 1_555 A MLY 135 N ? ? A LEU 165 A MLY 166 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale13 covale both ? A MLY 135 C ? ? ? 1_555 A THR 136 N ? ? A MLY 166 A THR 167 1_555 ? ? ? ? ? ? ? 1.345 ? ? metalc1 metalc ? ? A CYS 155 O ? ? ? 1_555 D NA . NA ? ? A CYS 186 A NA 1215 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc2 metalc ? ? A GLY 159 O ? ? ? 1_555 D NA . NA ? ? A GLY 190 A NA 1215 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 1215 A HOH 2137 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 1215 A HOH 2138 1_555 ? ? ? ? ? ? ? 2.704 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 1215 A HOH 2151 1_555 ? ? ? ? ? ? ? 2.396 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 4 ? AC ? 4 ? AD ? 2 ? AE ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AD 1 2 ? anti-parallel AE 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 MLY A 31 ? MET A 32 ? MLY A 62 MET A 63 AA 2 ILE A 24 ? SER A 28 ? ILE A 55 SER A 59 AA 3 LEU A 5 ? ILE A 9 ? LEU A 36 ILE A 40 AA 4 SER A 55 ? ALA A 62 ? SER A 86 ALA A 93 AA 5 SER A 101 ? GLY A 106 ? SER A 132 GLY A 137 AA 6 THR A 87 ? VAL A 88 ? THR A 118 VAL A 119 AB 1 LEU A 93 ? THR A 95 ? LEU A 124 THR A 126 AB 2 PHE A 69 ? SER A 77 ? PHE A 100 SER A 108 AB 3 GLY A 115 ? MET A 126 ? GLY A 146 MET A 157 AB 4 THR A 132 ? MLY A 135 ? THR A 163 MLY A 166 AC 1 LEU A 93 ? THR A 95 ? LEU A 124 THR A 126 AC 2 PHE A 69 ? SER A 77 ? PHE A 100 SER A 108 AC 3 GLY A 115 ? MET A 126 ? GLY A 146 MET A 157 AC 4 PHE A 142 ? CYS A 146 ? PHE A 173 CYS A 177 AD 1 THR A 132 ? MLY A 135 ? THR A 163 MLY A 166 AD 2 GLY A 115 ? MET A 126 ? GLY A 146 MET A 157 AE 1 PHE A 160 ? CYS A 161 ? PHE A 191 CYS A 192 AE 2 CYS A 167 ? GLU A 168 ? CYS A 198 GLU A 199 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N MLY A 31 ? N MLY A 62 O SER A 28 ? O SER A 59 AA 2 3 N ILE A 26 ? N ILE A 57 O LEU A 7 ? O LEU A 38 AA 3 4 N TRP A 8 ? N TRP A 39 O THR A 59 ? O THR A 90 AA 4 5 N TRP A 60 ? N TRP A 91 O SER A 101 ? O SER A 132 AA 5 6 N GLY A 106 ? N GLY A 137 O THR A 87 ? O THR A 118 AB 1 2 N GLY A 94 ? N GLY A 125 O TYR A 70 ? O TYR A 101 AB 2 3 N ARG A 76 ? N ARG A 107 O GLU A 120 ? O GLU A 151 AB 3 4 O VAL A 125 ? O VAL A 156 N ILE A 133 ? N ILE A 164 AC 1 2 N GLY A 94 ? N GLY A 125 O TYR A 70 ? O TYR A 101 AC 2 3 N ARG A 76 ? N ARG A 107 O GLU A 120 ? O GLU A 151 AC 3 4 N PHE A 119 ? N PHE A 150 O PHE A 142 ? O PHE A 173 AD 1 2 N ILE A 133 ? N ILE A 164 O VAL A 125 ? O VAL A 156 AE 1 2 N PHE A 160 ? N PHE A 191 O GLU A 168 ? O GLU A 199 # _database_PDB_matrix.entry_id 2YGO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YGO _atom_sites.fract_transf_matrix[1][1] 0.019609 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007448 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016555 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 32 ? ? ? A . n A 1 2 THR 2 33 33 THR THR A . n A 1 3 GLY 3 34 34 GLY GLY A . n A 1 4 SER 4 35 35 SER SER A . n A 1 5 LEU 5 36 36 LEU LEU A . n A 1 6 TYR 6 37 37 TYR TYR A . n A 1 7 LEU 7 38 38 LEU LEU A . n A 1 8 TRP 8 39 39 TRP TRP A . n A 1 9 ILE 9 40 40 ILE ILE A . n A 1 10 ASP 10 41 41 ASP ASP A . n A 1 11 ALA 11 42 42 ALA ALA A . n A 1 12 HIS 12 43 43 HIS HIS A . n A 1 13 GLN 13 44 44 GLN GLN A . n A 1 14 ALA 14 45 45 ALA ALA A . n A 1 15 ARG 15 46 46 ARG ARG A . n A 1 16 VAL 16 47 47 VAL VAL A . n A 1 17 LEU 17 48 48 LEU LEU A . n A 1 18 ILE 18 49 49 ILE ILE A . n A 1 19 GLY 19 50 50 GLY GLY A . n A 1 20 PHE 20 51 51 PHE PHE A . n A 1 21 GLU 21 52 52 GLU GLU A . n A 1 22 GLU 22 53 53 GLU GLU A . n A 1 23 ASP 23 54 54 ASP ASP A . n A 1 24 ILE 24 55 55 ILE ILE A . n A 1 25 LEU 25 56 56 LEU LEU A . n A 1 26 ILE 26 57 57 ILE ILE A . n A 1 27 VAL 27 58 58 VAL VAL A . n A 1 28 SER 28 59 59 SER SER A . n A 1 29 GLU 29 60 60 GLU GLU A . n A 1 30 GLY 30 61 61 GLY GLY A . n A 1 31 MLY 31 62 62 MLY MLY A . n A 1 32 MET 32 63 63 MET MET A . n A 1 33 ALA 33 64 64 ALA ALA A . n A 1 34 PRO 34 65 65 PRO PRO A . n A 1 35 PHE 35 66 66 PHE PHE A . n A 1 36 THR 36 67 67 THR THR A . n A 1 37 HIS 37 68 68 HIS HIS A . n A 1 38 ASP 38 69 69 ASP ASP A . n A 1 39 PHE 39 70 70 PHE PHE A . n A 1 40 ARG 40 71 71 ARG ARG A . n A 1 41 MLY 41 72 72 MLY MLY A . n A 1 42 ALA 42 73 73 ALA ALA A . n A 1 43 GLN 43 74 74 GLN GLN A . n A 1 44 GLN 44 75 75 GLN GLN A . n A 1 45 ARG 45 76 76 ARG ARG A . n A 1 46 MET 46 77 77 MET MET A . n A 1 47 PRO 47 78 78 PRO PRO A . n A 1 48 ALA 48 79 79 ALA ALA A . n A 1 49 ILE 49 80 80 ILE ILE A . n A 1 50 PRO 50 81 81 PRO PRO A . n A 1 51 VAL 51 82 82 VAL VAL A . n A 1 52 ASN 52 83 83 ASN ASN A . n A 1 53 ILE 53 84 84 ILE ILE A . n A 1 54 HIS 54 85 85 HIS HIS A . n A 1 55 SER 55 86 86 SER SER A . n A 1 56 MET 56 87 87 MET MET A . n A 1 57 ASN 57 88 88 ASN ASN A . n A 1 58 PHE 58 89 89 PHE PHE A . n A 1 59 THR 59 90 90 THR THR A . n A 1 60 TRP 60 91 91 TRP TRP A . n A 1 61 GLN 61 92 92 GLN GLN A . n A 1 62 ALA 62 93 93 ALA ALA A . n A 1 63 ALA 63 94 94 ALA ALA A . n A 1 64 GLY 64 95 95 GLY GLY A . n A 1 65 GLN 65 96 96 GLN GLN A . n A 1 66 ALA 66 97 97 ALA ALA A . n A 1 67 GLU 67 98 98 GLU GLU A . n A 1 68 TYR 68 99 99 TYR TYR A . n A 1 69 PHE 69 100 100 PHE PHE A . n A 1 70 TYR 70 101 101 TYR TYR A . n A 1 71 GLU 71 102 102 GLU GLU A . n A 1 72 PHE 72 103 103 PHE PHE A . n A 1 73 LEU 73 104 104 LEU LEU A . n A 1 74 SER 74 105 105 SER SER A . n A 1 75 LEU 75 106 106 LEU LEU A . n A 1 76 ARG 76 107 107 ARG ARG A . n A 1 77 SER 77 108 108 SER SER A . n A 1 78 LEU 78 109 109 LEU LEU A . n A 1 79 ASP 79 110 110 ASP ASP A . n A 1 80 MLY 80 111 111 MLY MLY A . n A 1 81 GLY 81 112 112 GLY GLY A . n A 1 82 ILE 82 113 113 ILE ILE A . n A 1 83 MET 83 114 114 MET MET A . n A 1 84 ALA 84 115 115 ALA ALA A . n A 1 85 ASP 85 116 116 ASP ASP A . n A 1 86 PRO 86 117 117 PRO PRO A . n A 1 87 THR 87 118 118 THR THR A . n A 1 88 VAL 88 119 119 VAL VAL A . n A 1 89 ASN 89 120 120 ASN ASN A . n A 1 90 VAL 90 121 121 VAL VAL A . n A 1 91 PRO 91 122 122 PRO PRO A . n A 1 92 LEU 92 123 123 LEU LEU A . n A 1 93 LEU 93 124 124 LEU LEU A . n A 1 94 GLY 94 125 125 GLY GLY A . n A 1 95 THR 95 126 126 THR THR A . n A 1 96 VAL 96 127 127 VAL VAL A . n A 1 97 PRO 97 128 128 PRO PRO A . n A 1 98 HIS 98 129 129 HIS HIS A . n A 1 99 MLY 99 130 130 MLY MLY A . n A 1 100 ALA 100 131 131 ALA ALA A . n A 1 101 SER 101 132 132 SER SER A . n A 1 102 VAL 102 133 133 VAL VAL A . n A 1 103 VAL 103 134 134 VAL VAL A . n A 1 104 GLN 104 135 135 GLN GLN A . n A 1 105 VAL 105 136 136 VAL VAL A . n A 1 106 GLY 106 137 137 GLY GLY A . n A 1 107 PHE 107 138 138 PHE PHE A . n A 1 108 PRO 108 139 139 PRO PRO A . n A 1 109 CYS 109 140 140 CYS CYS A . n A 1 110 LEU 110 141 141 LEU LEU A . n A 1 111 GLY 111 142 142 GLY GLY A . n A 1 112 MLY 112 143 143 MLY MLY A . n A 1 113 GLN 113 144 144 GLN GLN A . n A 1 114 ASP 114 145 145 ASP ASP A . n A 1 115 GLY 115 146 146 GLY GLY A . n A 1 116 VAL 116 147 147 VAL VAL A . n A 1 117 ALA 117 148 148 ALA ALA A . n A 1 118 ALA 118 149 149 ALA ALA A . n A 1 119 PHE 119 150 150 PHE PHE A . n A 1 120 GLU 120 151 151 GLU GLU A . n A 1 121 VAL 121 152 152 VAL VAL A . n A 1 122 ASP 122 153 153 ASP ASP A . n A 1 123 VAL 123 154 154 VAL VAL A . n A 1 124 ILE 124 155 155 ILE ILE A . n A 1 125 VAL 125 156 156 VAL VAL A . n A 1 126 MET 126 157 157 MET MET A . n A 1 127 ASN 127 158 158 ASN ASN A . n A 1 128 SER 128 159 159 SER SER A . n A 1 129 GLU 129 160 160 GLU GLU A . n A 1 130 GLY 130 161 161 GLY GLY A . n A 1 131 ASN 131 162 162 ASN ASN A . n A 1 132 THR 132 163 163 THR THR A . n A 1 133 ILE 133 164 164 ILE ILE A . n A 1 134 LEU 134 165 165 LEU LEU A . n A 1 135 MLY 135 166 166 MLY MLY A . n A 1 136 THR 136 167 167 THR THR A . n A 1 137 PRO 137 168 168 PRO PRO A . n A 1 138 GLN 138 169 169 GLN GLN A . n A 1 139 ASN 139 170 170 ASN ASN A . n A 1 140 ALA 140 171 171 ALA ALA A . n A 1 141 ILE 141 172 172 ILE ILE A . n A 1 142 PHE 142 173 173 PHE PHE A . n A 1 143 PHE 143 174 174 PHE PHE A . n A 1 144 LYS 144 175 175 LYS LYS A . n A 1 145 THR 145 176 176 THR THR A . n A 1 146 CYS 146 177 177 CYS CYS A . n A 1 147 GLN 147 178 178 GLN GLN A . n A 1 148 GLN 148 179 179 GLN GLN A . n A 1 149 ALA 149 180 180 ALA ALA A . n A 1 150 GLU 150 181 181 GLU GLU A . n A 1 151 CYS 151 182 182 CYS CYS A . n A 1 152 PRO 152 183 183 PRO PRO A . n A 1 153 GLY 153 184 184 GLY GLY A . n A 1 154 GLY 154 185 185 GLY GLY A . n A 1 155 CYS 155 186 186 CYS CYS A . n A 1 156 ARG 156 187 187 ARG ARG A . n A 1 157 ASN 157 188 188 ASN ASN A . n A 1 158 GLY 158 189 189 GLY GLY A . n A 1 159 GLY 159 190 190 GLY GLY A . n A 1 160 PHE 160 191 191 PHE PHE A . n A 1 161 CYS 161 192 192 CYS CYS A . n A 1 162 ASN 162 193 193 ASN ASN A . n A 1 163 GLU 163 194 194 GLU GLU A . n A 1 164 ARG 164 195 195 ARG ARG A . n A 1 165 ARG 165 196 196 ARG ARG A . n A 1 166 ILE 166 197 197 ILE ILE A . n A 1 167 CYS 167 198 198 CYS CYS A . n A 1 168 GLU 168 199 199 GLU GLU A . n A 1 169 CYS 169 200 200 CYS CYS A . n A 1 170 PRO 170 201 201 PRO PRO A . n A 1 171 ASP 171 202 202 ASP ASP A . n A 1 172 GLY 172 203 203 GLY GLY A . n A 1 173 PHE 173 204 204 PHE PHE A . n A 1 174 HIS 174 205 205 HIS HIS A . n A 1 175 GLY 175 206 206 GLY GLY A . n A 1 176 PRO 176 207 207 PRO PRO A . n A 1 177 HIS 177 208 208 HIS HIS A . n A 1 178 CYS 178 209 209 CYS CYS A . n A 1 179 GLU 179 210 210 GLU GLU A . n A 1 180 GLY 180 211 211 GLY GLY A . n A 1 181 THR 181 212 212 THR THR A . n A 1 182 LYS 182 213 ? ? ? A . n A 1 183 HIS 183 214 ? ? ? A . n A 1 184 HIS 184 215 ? ? ? A . n A 1 185 HIS 185 216 ? ? ? A . n A 1 186 HIS 186 217 ? ? ? A . n A 1 187 HIS 187 218 ? ? ? A . n A 1 188 HIS 188 219 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCF 1 1213 1213 PCF PCF A . C 3 NAG 1 1214 1214 NAG NAG A . D 4 NA 1 1215 1215 NA NA A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . E 5 HOH 48 2048 2048 HOH HOH A . E 5 HOH 49 2049 2049 HOH HOH A . E 5 HOH 50 2050 2050 HOH HOH A . E 5 HOH 51 2051 2051 HOH HOH A . E 5 HOH 52 2052 2052 HOH HOH A . E 5 HOH 53 2053 2053 HOH HOH A . E 5 HOH 54 2054 2054 HOH HOH A . E 5 HOH 55 2055 2055 HOH HOH A . E 5 HOH 56 2056 2056 HOH HOH A . E 5 HOH 57 2057 2057 HOH HOH A . E 5 HOH 58 2058 2058 HOH HOH A . E 5 HOH 59 2059 2059 HOH HOH A . E 5 HOH 60 2060 2060 HOH HOH A . E 5 HOH 61 2061 2061 HOH HOH A . E 5 HOH 62 2062 2062 HOH HOH A . E 5 HOH 63 2063 2063 HOH HOH A . E 5 HOH 64 2064 2064 HOH HOH A . E 5 HOH 65 2065 2065 HOH HOH A . E 5 HOH 66 2066 2066 HOH HOH A . E 5 HOH 67 2067 2067 HOH HOH A . E 5 HOH 68 2068 2068 HOH HOH A . E 5 HOH 69 2069 2069 HOH HOH A . E 5 HOH 70 2070 2070 HOH HOH A . E 5 HOH 71 2071 2071 HOH HOH A . E 5 HOH 72 2072 2072 HOH HOH A . E 5 HOH 73 2073 2073 HOH HOH A . E 5 HOH 74 2074 2074 HOH HOH A . E 5 HOH 75 2075 2075 HOH HOH A . E 5 HOH 76 2076 2076 HOH HOH A . E 5 HOH 77 2077 2077 HOH HOH A . E 5 HOH 78 2078 2078 HOH HOH A . E 5 HOH 79 2079 2079 HOH HOH A . E 5 HOH 80 2080 2080 HOH HOH A . E 5 HOH 81 2081 2081 HOH HOH A . E 5 HOH 82 2082 2082 HOH HOH A . E 5 HOH 83 2083 2083 HOH HOH A . E 5 HOH 84 2084 2084 HOH HOH A . E 5 HOH 85 2085 2085 HOH HOH A . E 5 HOH 86 2086 2086 HOH HOH A . E 5 HOH 87 2087 2087 HOH HOH A . E 5 HOH 88 2088 2088 HOH HOH A . E 5 HOH 89 2089 2089 HOH HOH A . E 5 HOH 90 2090 2090 HOH HOH A . E 5 HOH 91 2091 2091 HOH HOH A . E 5 HOH 92 2092 2092 HOH HOH A . E 5 HOH 93 2093 2093 HOH HOH A . E 5 HOH 94 2094 2094 HOH HOH A . E 5 HOH 95 2095 2095 HOH HOH A . E 5 HOH 96 2096 2096 HOH HOH A . E 5 HOH 97 2097 2097 HOH HOH A . E 5 HOH 98 2098 2098 HOH HOH A . E 5 HOH 99 2099 2099 HOH HOH A . E 5 HOH 100 2100 2100 HOH HOH A . E 5 HOH 101 2101 2101 HOH HOH A . E 5 HOH 102 2102 2102 HOH HOH A . E 5 HOH 103 2103 2103 HOH HOH A . E 5 HOH 104 2104 2104 HOH HOH A . E 5 HOH 105 2105 2105 HOH HOH A . E 5 HOH 106 2106 2106 HOH HOH A . E 5 HOH 107 2107 2107 HOH HOH A . E 5 HOH 108 2108 2108 HOH HOH A . E 5 HOH 109 2109 2109 HOH HOH A . E 5 HOH 110 2110 2110 HOH HOH A . E 5 HOH 111 2111 2111 HOH HOH A . E 5 HOH 112 2112 2112 HOH HOH A . E 5 HOH 113 2113 2113 HOH HOH A . E 5 HOH 114 2114 2114 HOH HOH A . E 5 HOH 115 2115 2115 HOH HOH A . E 5 HOH 116 2116 2116 HOH HOH A . E 5 HOH 117 2117 2117 HOH HOH A . E 5 HOH 118 2118 2118 HOH HOH A . E 5 HOH 119 2119 2119 HOH HOH A . E 5 HOH 120 2120 2120 HOH HOH A . E 5 HOH 121 2121 2121 HOH HOH A . E 5 HOH 122 2122 2122 HOH HOH A . E 5 HOH 123 2123 2123 HOH HOH A . E 5 HOH 124 2124 2124 HOH HOH A . E 5 HOH 125 2125 2125 HOH HOH A . E 5 HOH 126 2126 2126 HOH HOH A . E 5 HOH 127 2127 2127 HOH HOH A . E 5 HOH 128 2128 2128 HOH HOH A . E 5 HOH 129 2129 2129 HOH HOH A . E 5 HOH 130 2130 2130 HOH HOH A . E 5 HOH 131 2131 2131 HOH HOH A . E 5 HOH 132 2132 2132 HOH HOH A . E 5 HOH 133 2133 2133 HOH HOH A . E 5 HOH 134 2134 2134 HOH HOH A . E 5 HOH 135 2135 2135 HOH HOH A . E 5 HOH 136 2136 2136 HOH HOH A . E 5 HOH 137 2137 2137 HOH HOH A . E 5 HOH 138 2138 2138 HOH HOH A . E 5 HOH 139 2139 2139 HOH HOH A . E 5 HOH 140 2140 2140 HOH HOH A . E 5 HOH 141 2141 2141 HOH HOH A . E 5 HOH 142 2142 2142 HOH HOH A . E 5 HOH 143 2143 2143 HOH HOH A . E 5 HOH 144 2144 2144 HOH HOH A . E 5 HOH 145 2145 2145 HOH HOH A . E 5 HOH 146 2146 2146 HOH HOH A . E 5 HOH 147 2147 2147 HOH HOH A . E 5 HOH 148 2148 2148 HOH HOH A . E 5 HOH 149 2149 2149 HOH HOH A . E 5 HOH 150 2150 2150 HOH HOH A . E 5 HOH 151 2151 2151 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 57 A ASN 88 ? ASN 'GLYCOSYLATION SITE' 2 A MLY 31 A MLY 62 ? LYS N-DIMETHYL-LYSINE 3 A MLY 41 A MLY 72 ? LYS N-DIMETHYL-LYSINE 4 A MLY 80 A MLY 111 ? LYS N-DIMETHYL-LYSINE 5 A MLY 99 A MLY 130 ? LYS N-DIMETHYL-LYSINE 6 A MLY 112 A MLY 143 ? LYS N-DIMETHYL-LYSINE 7 A MLY 135 A MLY 166 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6200 ? 1 MORE -59.0 ? 1 'SSA (A^2)' 19190 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1.0000000000 0.0000000000 0.0000000000 -50.9960000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A CYS 155 ? A CYS 186 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? A GLY 159 ? A GLY 190 ? 1_555 90.4 ? 2 O ? A CYS 155 ? A CYS 186 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? E HOH . ? A HOH 2137 ? 1_555 75.0 ? 3 O ? A GLY 159 ? A GLY 190 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? E HOH . ? A HOH 2137 ? 1_555 161.5 ? 4 O ? A CYS 155 ? A CYS 186 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? E HOH . ? A HOH 2138 ? 1_555 69.9 ? 5 O ? A GLY 159 ? A GLY 190 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? E HOH . ? A HOH 2138 ? 1_555 60.4 ? 6 O ? E HOH . ? A HOH 2137 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? E HOH . ? A HOH 2138 ? 1_555 122.5 ? 7 O ? A CYS 155 ? A CYS 186 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? E HOH . ? A HOH 2151 ? 1_555 161.2 ? 8 O ? A GLY 159 ? A GLY 190 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? E HOH . ? A HOH 2151 ? 1_555 98.0 ? 9 O ? E HOH . ? A HOH 2137 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? E HOH . ? A HOH 2151 ? 1_555 99.3 ? 10 O ? E HOH . ? A HOH 2138 ? 1_555 NA ? D NA . ? A NA 1215 ? 1_555 O ? E HOH . ? A HOH 2151 ? 1_555 99.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-13 2 'Structure model' 1 1 2011-08-17 3 'Structure model' 1 2 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' Other 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_entity_nonpoly 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site 9 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.type' 3 3 'Structure model' '_entity.pdbx_description' 4 3 'Structure model' '_pdbx_database_status.status_code_sf' 5 3 'Structure model' '_pdbx_entity_nonpoly.name' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.value' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 3 'Structure model' '_struct_conn.pdbx_role' 20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -7.1040 _pdbx_refine_tls.origin_y -13.2309 _pdbx_refine_tls.origin_z 14.8380 _pdbx_refine_tls.T[1][1] 0.0225 _pdbx_refine_tls.T[2][2] 0.0237 _pdbx_refine_tls.T[3][3] 0.0358 _pdbx_refine_tls.T[1][2] -0.0117 _pdbx_refine_tls.T[1][3] -0.0160 _pdbx_refine_tls.T[2][3] 0.0020 _pdbx_refine_tls.L[1][1] 0.9297 _pdbx_refine_tls.L[2][2] 0.5518 _pdbx_refine_tls.L[3][3] 1.0348 _pdbx_refine_tls.L[1][2] 0.4263 _pdbx_refine_tls.L[1][3] 0.0996 _pdbx_refine_tls.L[2][3] -0.0090 _pdbx_refine_tls.S[1][1] -0.0336 _pdbx_refine_tls.S[1][2] -0.0007 _pdbx_refine_tls.S[1][3] 0.1715 _pdbx_refine_tls.S[2][1] -0.0312 _pdbx_refine_tls.S[2][2] 0.0257 _pdbx_refine_tls.S[2][3] 0.0797 _pdbx_refine_tls.S[3][1] -0.0979 _pdbx_refine_tls.S[3][2] -0.0863 _pdbx_refine_tls.S[3][3] 0.0012 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ALL # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2YGO _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;ISOFORM Q166K. THE N-TERMINAL THREE AMINO ACID RESIDUES (ETG) AND C-TERMINAL NINE AMINO ACID RESIDUES (GTKHHHHHH) OF THE CRYSTALLISATION CONSTRUCT ARE DERIVED FROM THE PHLSEC VECTOR. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 88 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O5 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 NAG _pdbx_validate_close_contact.auth_seq_id_2 1214 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PRO _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 201 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -80.72 _pdbx_validate_torsion.psi -159.67 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2017 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.88 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 32 ? A GLU 1 2 1 Y 1 A LYS 213 ? A LYS 182 3 1 Y 1 A HIS 214 ? A HIS 183 4 1 Y 1 A HIS 215 ? A HIS 184 5 1 Y 1 A HIS 216 ? A HIS 185 6 1 Y 1 A HIS 217 ? A HIS 186 7 1 Y 1 A HIS 218 ? A HIS 187 8 1 Y 1 A HIS 219 ? A HIS 188 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE PCF 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 'SODIUM ION' NA 5 water HOH #