data_2YH1 # _entry.id 2YH1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YH1 PDBE EBI-48116 WWPDB D_1290048116 BMRB 17623 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2U2F unspecified 'SOLUTION STRUCTURE OF THE SECOND RIBONUCLEIC ACID- BINDING DOMAIN OF HU2AF65' PDB 1U2F unspecified 'SOLUTION STRUCTURE OF THE FIRST RIBONUCLEIC ACID-BINDING DOMAIN OF HU2AF65' PDB 1O0P unspecified 'SOLUTION STRUCTURE OF THE THIRD RNA RECOGNITION MOTIF ( RRM)OF U2AF65 IN COMPLEX WITH AN N-TERMINAL SF1 PEPTIDE' PDB 1OPI unspecified 'SOLUTION STRUCTURE OF THE THIRD RNA RECOGNITION MOTIF ( RRM)OF U2AF65 IN COMPLEX WITH AN N-TERMINAL SF1 PEPTIDE' PDB 2G4B unspecified 'STRUCTURE OF U2AF65 VARIANT WITH POLYURIDINE TRACT' PDB 1JMT unspecified 'X-RAY STRUCTURE OF A CORE U2AF65/U2AF35 HETERODIMER' PDB 2YH0 unspecified 'SOLUTION STRUCTURE OF THE CLOSED CONFORMATION OF HUMAN U2AF65 TANDEM RRM1 AND RRM2 DOMAINS' PDB 2YH4 unspecified 'SOLUTION STRUCTURE OF THE OPEN CONFORMATION OF HUMAN U2AF65 TANDEM RRM1 AND RRM2 DOMAINS' BMRB 17623 unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YH1 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-04-26 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mackereth, C.D.' 1 'Madl, T.' 2 'Simon, B.' 3 'Zanier, K.' 4 'Gasch, A.' 5 'Sattler, M.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Multi-Domain Conformational Selection Underlies Pre-Mrna Splicing Regulation by U2Af' Nature 475 408 ? 2011 NATUAS UK 0028-0836 0006 ? 21753750 10.1038/NATURE10171 1 'Structural Basis for Polypyrimidine Tract Recognition by the Essential Pre-Mrna Splicing Factor U2Af65.' Mol.Cell 23 49 ? 2006 MOCEFL US 1097-2765 2168 ? 16818232 10.1016/J.MOLCEL.2006.05.025 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mackereth, C.D.' 1 ? primary 'Madl, T.' 2 ? primary 'Bonnal, S.' 3 ? primary 'Simon, B.' 4 ? primary 'Zanier, K.' 5 ? primary 'Gasch, A.' 6 ? primary 'Rybin, V.' 7 ? primary 'Valcarcel, J.' 8 ? primary 'Sattler, M.' 9 ? 1 'Sickmier, E.A.' 10 ? 1 'Frato, K.E.' 11 ? 1 'Shen, H.' 12 ? 1 'Paranawithana, S.R.' 13 ? 1 'Green, M.R.' 14 ? 1 'Kielkopf, C.L.' 15 ? # _cell.entry_id 2YH1 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YH1 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SPLICING FACTOR U2AF 65 KDA SUBUNIT' 21510.525 1 ? ? 'TANDEM RRM1 AND RRM2 DOMAINS JOINED BY NATIVE LINKER, RESIDUES 148-342' ;STRUCTURE BASED ON DATA FROM TEN CYSTEINE MUTANTS (N155C, A164C, A171C, L187C, A188C, T209C, D273C, S281C, A287C AND A318C) COVALENTLY MODIFIED BY 3-(2-IODOACETAMIDO)-2,2,5,5, TETRAMETHYL-1-PYRROLIDINYLOXY RADICAL (IODOACETAMIDO-PROXYL) ; 2 polymer syn "5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP)-3'" 2710.535 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'U2 AUXILIARY FACTOR 65 KDA SUBUNIT, HUMAN U2AF65, U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT, HU2AF(65)' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA ; ;GAMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA ; A ? 2 polyribonucleotide no no UUUUUUUUU UUUUUUUUU B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ALA n 1 5 ARG n 1 6 ARG n 1 7 LEU n 1 8 TYR n 1 9 VAL n 1 10 GLY n 1 11 ASN n 1 12 ILE n 1 13 PRO n 1 14 PHE n 1 15 GLY n 1 16 ILE n 1 17 THR n 1 18 GLU n 1 19 GLU n 1 20 ALA n 1 21 MET n 1 22 MET n 1 23 ASP n 1 24 PHE n 1 25 PHE n 1 26 ASN n 1 27 ALA n 1 28 GLN n 1 29 MET n 1 30 ARG n 1 31 LEU n 1 32 GLY n 1 33 GLY n 1 34 LEU n 1 35 THR n 1 36 GLN n 1 37 ALA n 1 38 PRO n 1 39 GLY n 1 40 ASN n 1 41 PRO n 1 42 VAL n 1 43 LEU n 1 44 ALA n 1 45 VAL n 1 46 GLN n 1 47 ILE n 1 48 ASN n 1 49 GLN n 1 50 ASP n 1 51 LYS n 1 52 ASN n 1 53 PHE n 1 54 ALA n 1 55 PHE n 1 56 LEU n 1 57 GLU n 1 58 PHE n 1 59 ARG n 1 60 SER n 1 61 VAL n 1 62 ASP n 1 63 GLU n 1 64 THR n 1 65 THR n 1 66 GLN n 1 67 ALA n 1 68 MET n 1 69 ALA n 1 70 PHE n 1 71 ASP n 1 72 GLY n 1 73 ILE n 1 74 ILE n 1 75 PHE n 1 76 GLN n 1 77 GLY n 1 78 GLN n 1 79 SER n 1 80 LEU n 1 81 LYS n 1 82 ILE n 1 83 ARG n 1 84 ARG n 1 85 PRO n 1 86 HIS n 1 87 ASP n 1 88 TYR n 1 89 GLN n 1 90 PRO n 1 91 LEU n 1 92 PRO n 1 93 GLY n 1 94 MET n 1 95 SER n 1 96 GLU n 1 97 ASN n 1 98 PRO n 1 99 SER n 1 100 VAL n 1 101 TYR n 1 102 VAL n 1 103 PRO n 1 104 GLY n 1 105 VAL n 1 106 VAL n 1 107 SER n 1 108 THR n 1 109 VAL n 1 110 VAL n 1 111 PRO n 1 112 ASP n 1 113 SER n 1 114 ALA n 1 115 HIS n 1 116 LYS n 1 117 LEU n 1 118 PHE n 1 119 ILE n 1 120 GLY n 1 121 GLY n 1 122 LEU n 1 123 PRO n 1 124 ASN n 1 125 TYR n 1 126 LEU n 1 127 ASN n 1 128 ASP n 1 129 ASP n 1 130 GLN n 1 131 VAL n 1 132 LYS n 1 133 GLU n 1 134 LEU n 1 135 LEU n 1 136 THR n 1 137 SER n 1 138 PHE n 1 139 GLY n 1 140 PRO n 1 141 LEU n 1 142 LYS n 1 143 ALA n 1 144 PHE n 1 145 ASN n 1 146 LEU n 1 147 VAL n 1 148 LYS n 1 149 ASP n 1 150 SER n 1 151 ALA n 1 152 THR n 1 153 GLY n 1 154 LEU n 1 155 SER n 1 156 LYS n 1 157 GLY n 1 158 TYR n 1 159 ALA n 1 160 PHE n 1 161 CYS n 1 162 GLU n 1 163 TYR n 1 164 VAL n 1 165 ASP n 1 166 ILE n 1 167 ASN n 1 168 VAL n 1 169 THR n 1 170 ASP n 1 171 GLN n 1 172 ALA n 1 173 ILE n 1 174 ALA n 1 175 GLY n 1 176 LEU n 1 177 ASN n 1 178 GLY n 1 179 MET n 1 180 GLN n 1 181 LEU n 1 182 GLY n 1 183 ASP n 1 184 LYS n 1 185 LYS n 1 186 LEU n 1 187 LEU n 1 188 VAL n 1 189 GLN n 1 190 ARG n 1 191 ALA n 1 192 SER n 1 193 VAL n 1 194 GLY n 1 195 ALA n 1 196 LYS n 1 197 ASN n 1 198 ALA n 2 1 U n 2 2 U n 2 3 U n 2 4 U n 2 5 U n 2 6 U n 2 7 U n 2 8 U n 2 9 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant PLYSS _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PETM-11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP U2AF2_HUMAN 1 ? ? P26368 ? 2 PDB 2YH1 2 ? ? 2YH1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YH1 A 4 ? 198 ? P26368 148 ? 342 ? 148 342 2 2 2YH1 B 1 ? 9 ? 2YH1 601 ? 609 ? 601 609 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YH1 GLY A 1 ? UNP P26368 ? ? 'expression tag' 145 1 1 2YH1 ALA A 2 ? UNP P26368 ? ? 'expression tag' 146 2 1 2YH1 MET A 3 ? UNP P26368 ? ? 'expression tag' 147 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 1H 1 2 1 '15N HSQC (PRE)' 1 3 2 1H 1 4 2 '15N TROSY (HN-N RDC)' 1 5 3 '3D HNCO (N-CO RDC)' 1 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 295.0 atm 1.0 6.5 70 mM pH K 2 295.0 atm 1.0 6.5 70 mM pH K 3 295.0 atm 1.0 6.5 70 mM pH K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '90% WATER/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 AVANCE Bruker 600 2 AVANCE Bruker 600 3 AVANCE Bruker 600 # _pdbx_nmr_refine.entry_id 2YH1 _pdbx_nmr_refine.method 'MODIFIED ARIA' _pdbx_nmr_refine.details ;STRUCTURE CALCULATION INCLUDED DISTANCE RESTRAINTS BASED ON PARAMAGNETIC RELAXATION ENHANCEMENT DATA FROM TEN INDEPENDENT CYSTEINE MUTANTS (N155C, A164C, A171C, L187C, A188C, T209C, D273C, S281C, A287C AND A318C) COVALENTLY MODIFIED BY 3-(2-IODOACETAMIDO)-2,2,5,5, TETRAMETHYL-1-PYRROLIDINYLOXY RADICAL (IODOACETAMIDO- PROXYL). THE STRUCTURE WAS DETERMINED USING A MULTI-STEP PROTOCOL. FIRST WITH REFINEMENT OF INDIVIDUAL STRUCTURED DOMAINS FOR RRM1 AND RRM2 OF U2AF65. THE INITIAL COORDINATES OF THE ISOLATED DOMAINS WERE BASED ON PDB ENTRY 2G4B BY SICKMIER ET AL. 2006 (SEE REMARK 1 REFERENCE). SECOND STEP WAS ADDITION AND RANDOMIZATION OF FLEXIBLE AND LINKER RESIDUES. THE THIRD STEP WAS MODEL CALCULATION USING RDC ORIENTATION, PRE-BASED DISTANCE, TALOS DIHEDRAL AND HYDROGEN BOND RESTRAINTS WITH THE RRM1 AND RRM2 DOMAINS RESTRAINED TO THEIR INITIAL STARTING STRUCTURES. INTER- MOLECULAR PROTEIN-RNA DISTANCE RESTRAINTS WERE BASED ON ATOMIC DETAILS FROM PDB ENTRY 2G4B AND ASSUMED AN EIGHT- URIDINE BINDING MODE FOR U2AF65 RRM1-RRM2. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2YH1 _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING A MULTI-STEP PROTOCOL AS DESCRIBED IN REMARK 3.' # _pdbx_nmr_ensemble.entry_id 2YH1 _pdbx_nmr_ensemble.conformers_calculated_total_number 125 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST ENERGY' # _pdbx_nmr_representative.entry_id 2YH1 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS 1.2 'BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, READ,RICE,SIMONSON,WARREN' 1 'structure solution' Sparky ? ? 2 # _exptl.entry_id 2YH1 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2YH1 _struct.title 'Model of human U2AF65 tandem RRM1 and RRM2 domains with eight-site uridine binding' _struct.pdbx_descriptor 'SPLICING FACTOR U2AF 65 KDA SUBUNIT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YH1 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, PRE-MRNA SPLICING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 17 ? GLY A 33 ? THR A 161 GLY A 177 1 ? 17 HELX_P HELX_P2 2 SER A 60 ? MET A 68 ? SER A 204 MET A 212 1 ? 9 HELX_P HELX_P3 3 ALA A 69 ? ASP A 71 ? ALA A 213 ASP A 215 5 ? 3 HELX_P HELX_P4 4 ASN A 127 ? SER A 137 ? ASN A 271 SER A 281 1 ? 11 HELX_P HELX_P5 5 ASP A 165 ? ASN A 177 ? ASP A 309 ASN A 321 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 4 ? AD ? 2 ? AE ? 2 ? AF ? 2 ? AG ? 2 ? AH ? 2 ? AI ? 2 ? AJ ? 4 ? AK ? 2 ? AL ? 2 ? AM ? 2 ? AN ? 2 ? AO ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AB 1 2 ? parallel AC 1 2 ? parallel AC 2 3 ? parallel AD 1 2 ? parallel AE 1 2 ? parallel AF 1 2 ? parallel AG 1 2 ? parallel AH 1 2 ? parallel AI 1 2 ? parallel AJ 1 2 ? parallel AJ 2 3 ? parallel AJ 3 4 ? parallel AK 1 2 ? parallel AL 1 2 ? parallel AM 1 2 ? parallel AN 1 2 ? parallel AO 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 14 ? GLY A 15 ? PHE A 158 GLY A 159 AA 2 PHE A 14 ? GLY A 15 ? PHE A 158 GLY A 159 AB 1 GLN A 180 ? LEU A 181 ? GLN A 324 LEU A 325 AB 2 GLN A 180 ? LEU A 181 ? GLN A 324 LEU A 325 AC 1 GLY A 194 ? LYS A 196 ? GLY A 338 LYS A 340 AC 2 ALA A 191 ? LYS A 196 ? ALA A 335 LYS A 340 AC 3 ALA A 195 ? LYS A 196 ? ALA A 339 LYS A 340 AD 1 TYR A 163 ? VAL A 164 ? TYR A 307 VAL A 308 AD 2 TYR A 163 ? VAL A 164 ? TYR A 307 VAL A 308 AE 1 ILE A 74 ? PHE A 75 ? ILE A 218 PHE A 219 AE 2 ILE A 74 ? PHE A 75 ? ILE A 218 PHE A 219 AF 1 ASN A 97 ? PRO A 98 ? ASN A 241 PRO A 242 AF 2 SER A 99 ? VAL A 100 ? SER A 243 VAL A 244 AG 1 LEU A 134 ? THR A 136 ? LEU A 278 THR A 280 AG 2 LEU A 134 ? THR A 136 ? LEU A 278 THR A 280 AH 1 ILE A 166 ? VAL A 168 ? ILE A 310 VAL A 312 AH 2 ILE A 166 ? VAL A 168 ? ILE A 310 VAL A 312 AI 1 VAL A 188 ? GLN A 189 ? VAL A 332 GLN A 333 AI 2 VAL A 188 ? GLN A 189 ? VAL A 332 GLN A 333 AJ 1 ASN A 48 ? GLN A 49 ? ASN A 192 GLN A 193 AJ 2 ASN A 48 ? ASP A 50 ? ASN A 192 ASP A 194 AJ 3 GLN A 49 ? ASN A 52 ? GLN A 193 ASN A 196 AJ 4 LYS A 51 ? ASN A 52 ? LYS A 195 ASN A 196 AK 1 THR A 64 ? ALA A 67 ? THR A 208 ALA A 211 AK 2 THR A 64 ? ALA A 67 ? THR A 208 ALA A 211 AL 1 PHE A 118 ? ILE A 119 ? PHE A 262 ILE A 263 AL 2 PHE A 118 ? ILE A 119 ? PHE A 262 ILE A 263 AM 1 VAL A 42 ? GLN A 46 ? VAL A 186 GLN A 190 AM 2 VAL A 42 ? GLN A 46 ? VAL A 186 GLN A 190 AN 1 ALA A 172 ? ILE A 173 ? ALA A 316 ILE A 317 AN 2 ALA A 172 ? ILE A 173 ? ALA A 316 ILE A 317 AO 1 LEU A 126 ? ASN A 127 ? LEU A 270 ASN A 271 AO 2 LEU A 126 ? ASN A 127 ? LEU A 270 ASN A 271 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLY A 15 ? N GLY A 159 O PHE A 14 ? O PHE A 158 AB 1 2 N LEU A 181 ? N LEU A 325 O GLN A 180 ? O GLN A 324 AC 1 2 N GLY A 194 ? N GLY A 338 O VAL A 193 ? O VAL A 337 AC 2 3 N LYS A 196 ? N LYS A 340 O ALA A 195 ? O ALA A 339 AD 1 2 N VAL A 164 ? N VAL A 308 O TYR A 163 ? O TYR A 307 AE 1 2 N PHE A 75 ? N PHE A 219 O ILE A 74 ? O ILE A 218 AF 1 2 N ASN A 97 ? N ASN A 241 O SER A 99 ? O SER A 243 AG 1 2 O LEU A 134 ? O LEU A 278 N LEU A 134 ? N LEU A 278 AH 1 2 N ASN A 167 ? N ASN A 311 O ILE A 166 ? O ILE A 310 AI 1 2 N GLN A 189 ? N GLN A 333 O VAL A 188 ? O VAL A 332 AJ 1 2 N GLN A 49 ? N GLN A 193 O ASN A 48 ? O ASN A 192 AJ 2 3 N ASP A 50 ? N ASP A 194 O GLN A 49 ? O GLN A 193 AJ 3 4 O LYS A 51 ? O LYS A 195 N LYS A 51 ? N LYS A 195 AK 1 2 N THR A 65 ? N THR A 209 O THR A 64 ? O THR A 208 AL 1 2 N ILE A 119 ? N ILE A 263 O PHE A 118 ? O PHE A 262 AM 1 2 N LEU A 43 ? N LEU A 187 O VAL A 42 ? O VAL A 186 AN 1 2 N ILE A 173 ? N ILE A 317 O ALA A 172 ? O ALA A 316 AO 1 2 N ASN A 127 ? N ASN A 271 O LEU A 126 ? O LEU A 270 # _database_PDB_matrix.entry_id 2YH1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YH1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 145 ? ? ? A . n A 1 2 ALA 2 146 ? ? ? A . n A 1 3 MET 3 147 ? ? ? A . n A 1 4 ALA 4 148 148 ALA ALA A . n A 1 5 ARG 5 149 149 ARG ARG A . n A 1 6 ARG 6 150 150 ARG ARG A . n A 1 7 LEU 7 151 151 LEU LEU A . n A 1 8 TYR 8 152 152 TYR TYR A . n A 1 9 VAL 9 153 153 VAL VAL A . n A 1 10 GLY 10 154 154 GLY GLY A . n A 1 11 ASN 11 155 155 ASN ASN A . n A 1 12 ILE 12 156 156 ILE ILE A . n A 1 13 PRO 13 157 157 PRO PRO A . n A 1 14 PHE 14 158 158 PHE PHE A . n A 1 15 GLY 15 159 159 GLY GLY A . n A 1 16 ILE 16 160 160 ILE ILE A . n A 1 17 THR 17 161 161 THR THR A . n A 1 18 GLU 18 162 162 GLU GLU A . n A 1 19 GLU 19 163 163 GLU GLU A . n A 1 20 ALA 20 164 164 ALA ALA A . n A 1 21 MET 21 165 165 MET MET A . n A 1 22 MET 22 166 166 MET MET A . n A 1 23 ASP 23 167 167 ASP ASP A . n A 1 24 PHE 24 168 168 PHE PHE A . n A 1 25 PHE 25 169 169 PHE PHE A . n A 1 26 ASN 26 170 170 ASN ASN A . n A 1 27 ALA 27 171 171 ALA ALA A . n A 1 28 GLN 28 172 172 GLN GLN A . n A 1 29 MET 29 173 173 MET MET A . n A 1 30 ARG 30 174 174 ARG ARG A . n A 1 31 LEU 31 175 175 LEU LEU A . n A 1 32 GLY 32 176 176 GLY GLY A . n A 1 33 GLY 33 177 177 GLY GLY A . n A 1 34 LEU 34 178 178 LEU LEU A . n A 1 35 THR 35 179 179 THR THR A . n A 1 36 GLN 36 180 180 GLN GLN A . n A 1 37 ALA 37 181 181 ALA ALA A . n A 1 38 PRO 38 182 182 PRO PRO A . n A 1 39 GLY 39 183 183 GLY GLY A . n A 1 40 ASN 40 184 184 ASN ASN A . n A 1 41 PRO 41 185 185 PRO PRO A . n A 1 42 VAL 42 186 186 VAL VAL A . n A 1 43 LEU 43 187 187 LEU LEU A . n A 1 44 ALA 44 188 188 ALA ALA A . n A 1 45 VAL 45 189 189 VAL VAL A . n A 1 46 GLN 46 190 190 GLN GLN A . n A 1 47 ILE 47 191 191 ILE ILE A . n A 1 48 ASN 48 192 192 ASN ASN A . n A 1 49 GLN 49 193 193 GLN GLN A . n A 1 50 ASP 50 194 194 ASP ASP A . n A 1 51 LYS 51 195 195 LYS LYS A . n A 1 52 ASN 52 196 196 ASN ASN A . n A 1 53 PHE 53 197 197 PHE PHE A . n A 1 54 ALA 54 198 198 ALA ALA A . n A 1 55 PHE 55 199 199 PHE PHE A . n A 1 56 LEU 56 200 200 LEU LEU A . n A 1 57 GLU 57 201 201 GLU GLU A . n A 1 58 PHE 58 202 202 PHE PHE A . n A 1 59 ARG 59 203 203 ARG ARG A . n A 1 60 SER 60 204 204 SER SER A . n A 1 61 VAL 61 205 205 VAL VAL A . n A 1 62 ASP 62 206 206 ASP ASP A . n A 1 63 GLU 63 207 207 GLU GLU A . n A 1 64 THR 64 208 208 THR THR A . n A 1 65 THR 65 209 209 THR THR A . n A 1 66 GLN 66 210 210 GLN GLN A . n A 1 67 ALA 67 211 211 ALA ALA A . n A 1 68 MET 68 212 212 MET MET A . n A 1 69 ALA 69 213 213 ALA ALA A . n A 1 70 PHE 70 214 214 PHE PHE A . n A 1 71 ASP 71 215 215 ASP ASP A . n A 1 72 GLY 72 216 216 GLY GLY A . n A 1 73 ILE 73 217 217 ILE ILE A . n A 1 74 ILE 74 218 218 ILE ILE A . n A 1 75 PHE 75 219 219 PHE PHE A . n A 1 76 GLN 76 220 220 GLN GLN A . n A 1 77 GLY 77 221 221 GLY GLY A . n A 1 78 GLN 78 222 222 GLN GLN A . n A 1 79 SER 79 223 223 SER SER A . n A 1 80 LEU 80 224 224 LEU LEU A . n A 1 81 LYS 81 225 225 LYS LYS A . n A 1 82 ILE 82 226 226 ILE ILE A . n A 1 83 ARG 83 227 227 ARG ARG A . n A 1 84 ARG 84 228 228 ARG ARG A . n A 1 85 PRO 85 229 229 PRO PRO A . n A 1 86 HIS 86 230 230 HIS HIS A . n A 1 87 ASP 87 231 231 ASP ASP A . n A 1 88 TYR 88 232 232 TYR TYR A . n A 1 89 GLN 89 233 233 GLN GLN A . n A 1 90 PRO 90 234 234 PRO PRO A . n A 1 91 LEU 91 235 235 LEU LEU A . n A 1 92 PRO 92 236 236 PRO PRO A . n A 1 93 GLY 93 237 237 GLY GLY A . n A 1 94 MET 94 238 238 MET MET A . n A 1 95 SER 95 239 239 SER SER A . n A 1 96 GLU 96 240 240 GLU GLU A . n A 1 97 ASN 97 241 241 ASN ASN A . n A 1 98 PRO 98 242 242 PRO PRO A . n A 1 99 SER 99 243 243 SER SER A . n A 1 100 VAL 100 244 244 VAL VAL A . n A 1 101 TYR 101 245 245 TYR TYR A . n A 1 102 VAL 102 246 246 VAL VAL A . n A 1 103 PRO 103 247 247 PRO PRO A . n A 1 104 GLY 104 248 248 GLY GLY A . n A 1 105 VAL 105 249 249 VAL VAL A . n A 1 106 VAL 106 250 250 VAL VAL A . n A 1 107 SER 107 251 251 SER SER A . n A 1 108 THR 108 252 252 THR THR A . n A 1 109 VAL 109 253 253 VAL VAL A . n A 1 110 VAL 110 254 254 VAL VAL A . n A 1 111 PRO 111 255 255 PRO PRO A . n A 1 112 ASP 112 256 256 ASP ASP A . n A 1 113 SER 113 257 257 SER SER A . n A 1 114 ALA 114 258 258 ALA ALA A . n A 1 115 HIS 115 259 259 HIS HIS A . n A 1 116 LYS 116 260 260 LYS LYS A . n A 1 117 LEU 117 261 261 LEU LEU A . n A 1 118 PHE 118 262 262 PHE PHE A . n A 1 119 ILE 119 263 263 ILE ILE A . n A 1 120 GLY 120 264 264 GLY GLY A . n A 1 121 GLY 121 265 265 GLY GLY A . n A 1 122 LEU 122 266 266 LEU LEU A . n A 1 123 PRO 123 267 267 PRO PRO A . n A 1 124 ASN 124 268 268 ASN ASN A . n A 1 125 TYR 125 269 269 TYR TYR A . n A 1 126 LEU 126 270 270 LEU LEU A . n A 1 127 ASN 127 271 271 ASN ASN A . n A 1 128 ASP 128 272 272 ASP ASP A . n A 1 129 ASP 129 273 273 ASP ASP A . n A 1 130 GLN 130 274 274 GLN GLN A . n A 1 131 VAL 131 275 275 VAL VAL A . n A 1 132 LYS 132 276 276 LYS LYS A . n A 1 133 GLU 133 277 277 GLU GLU A . n A 1 134 LEU 134 278 278 LEU LEU A . n A 1 135 LEU 135 279 279 LEU LEU A . n A 1 136 THR 136 280 280 THR THR A . n A 1 137 SER 137 281 281 SER SER A . n A 1 138 PHE 138 282 282 PHE PHE A . n A 1 139 GLY 139 283 283 GLY GLY A . n A 1 140 PRO 140 284 284 PRO PRO A . n A 1 141 LEU 141 285 285 LEU LEU A . n A 1 142 LYS 142 286 286 LYS LYS A . n A 1 143 ALA 143 287 287 ALA ALA A . n A 1 144 PHE 144 288 288 PHE PHE A . n A 1 145 ASN 145 289 289 ASN ASN A . n A 1 146 LEU 146 290 290 LEU LEU A . n A 1 147 VAL 147 291 291 VAL VAL A . n A 1 148 LYS 148 292 292 LYS LYS A . n A 1 149 ASP 149 293 293 ASP ASP A . n A 1 150 SER 150 294 294 SER SER A . n A 1 151 ALA 151 295 295 ALA ALA A . n A 1 152 THR 152 296 296 THR THR A . n A 1 153 GLY 153 297 297 GLY GLY A . n A 1 154 LEU 154 298 298 LEU LEU A . n A 1 155 SER 155 299 299 SER SER A . n A 1 156 LYS 156 300 300 LYS LYS A . n A 1 157 GLY 157 301 301 GLY GLY A . n A 1 158 TYR 158 302 302 TYR TYR A . n A 1 159 ALA 159 303 303 ALA ALA A . n A 1 160 PHE 160 304 304 PHE PHE A . n A 1 161 CYS 161 305 305 CYS CYS A . n A 1 162 GLU 162 306 306 GLU GLU A . n A 1 163 TYR 163 307 307 TYR TYR A . n A 1 164 VAL 164 308 308 VAL VAL A . n A 1 165 ASP 165 309 309 ASP ASP A . n A 1 166 ILE 166 310 310 ILE ILE A . n A 1 167 ASN 167 311 311 ASN ASN A . n A 1 168 VAL 168 312 312 VAL VAL A . n A 1 169 THR 169 313 313 THR THR A . n A 1 170 ASP 170 314 314 ASP ASP A . n A 1 171 GLN 171 315 315 GLN GLN A . n A 1 172 ALA 172 316 316 ALA ALA A . n A 1 173 ILE 173 317 317 ILE ILE A . n A 1 174 ALA 174 318 318 ALA ALA A . n A 1 175 GLY 175 319 319 GLY GLY A . n A 1 176 LEU 176 320 320 LEU LEU A . n A 1 177 ASN 177 321 321 ASN ASN A . n A 1 178 GLY 178 322 322 GLY GLY A . n A 1 179 MET 179 323 323 MET MET A . n A 1 180 GLN 180 324 324 GLN GLN A . n A 1 181 LEU 181 325 325 LEU LEU A . n A 1 182 GLY 182 326 326 GLY GLY A . n A 1 183 ASP 183 327 327 ASP ASP A . n A 1 184 LYS 184 328 328 LYS LYS A . n A 1 185 LYS 185 329 329 LYS LYS A . n A 1 186 LEU 186 330 330 LEU LEU A . n A 1 187 LEU 187 331 331 LEU LEU A . n A 1 188 VAL 188 332 332 VAL VAL A . n A 1 189 GLN 189 333 333 GLN GLN A . n A 1 190 ARG 190 334 334 ARG ARG A . n A 1 191 ALA 191 335 335 ALA ALA A . n A 1 192 SER 192 336 336 SER SER A . n A 1 193 VAL 193 337 337 VAL VAL A . n A 1 194 GLY 194 338 338 GLY GLY A . n A 1 195 ALA 195 339 339 ALA ALA A . n A 1 196 LYS 196 340 340 LYS LYS A . n A 1 197 ASN 197 341 341 ASN ASN A . n A 1 198 ALA 198 342 342 ALA ALA A . n B 2 1 U 1 601 601 U U B . n B 2 2 U 2 602 602 U U B . n B 2 3 U 3 603 603 U U B . n B 2 4 U 4 604 604 U U B . n B 2 5 U 5 605 605 U U B . n B 2 6 U 6 606 606 U U B . n B 2 7 U 7 607 607 U U B . n B 2 8 U 8 608 608 U U B . n B 2 9 U 9 609 609 U U B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-20 2 'Structure model' 1 1 2011-07-27 3 'Structure model' 1 2 2019-09-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other 4 3 'Structure model' 'Data collection' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_status 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_database_status.status_code_mr' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ1 A LYS 300 ? ? "HO2'" B U 601 ? ? 0.82 2 1 NZ A LYS 300 ? ? "HO2'" B U 601 ? ? 1.11 3 1 HZ1 A LYS 225 ? ? "H2'" B U 604 ? ? 1.33 4 1 OD1 A ASP 231 ? ? O4 B U 607 ? ? 1.93 5 1 NZ A LYS 300 ? ? "O2'" B U 601 ? ? 1.96 6 2 HZ1 A LYS 300 ? ? "HO2'" B U 601 ? ? 1.17 7 2 NZ A LYS 300 ? ? "HO2'" B U 601 ? ? 1.38 8 2 OD2 A ASP 231 ? ? O4 B U 607 ? ? 1.62 9 2 OD2 A ASP 231 ? ? C4 B U 607 ? ? 2.09 10 2 NZ A LYS 300 ? ? "O2'" B U 601 ? ? 2.13 11 3 HZ1 A LYS 300 ? ? "HO2'" B U 601 ? ? 1.32 12 3 OD2 A ASP 231 ? ? O4 B U 607 ? ? 2.05 13 4 HZ1 A LYS 300 ? ? "HO2'" B U 601 ? ? 0.88 14 4 HD11 A LEU 331 ? ? H3 B U 602 ? ? 0.97 15 4 CD1 A LEU 331 ? ? H3 B U 602 ? ? 1.20 16 4 HB1 A ALA 148 ? ? HG11 A VAL 205 ? ? 1.29 17 4 NZ A LYS 300 ? ? "HO2'" B U 601 ? ? 1.45 18 4 HD11 A LEU 331 ? ? N3 B U 602 ? ? 1.57 19 4 OD1 A ASP 272 ? ? HZ2 A LYS 292 ? ? 1.58 20 4 NZ A LYS 300 ? ? "O2'" B U 601 ? ? 2.09 21 4 CD1 A LEU 331 ? ? N3 B U 602 ? ? 2.16 22 4 OD1 A ASP 231 ? ? O4 B U 607 ? ? 2.18 23 5 HZ1 A LYS 300 ? ? "HO2'" B U 601 ? ? 0.86 24 5 NZ A LYS 300 ? ? "HO2'" B U 601 ? ? 1.26 25 5 OD1 A ASP 231 ? ? O4 B U 607 ? ? 1.59 26 5 NZ A LYS 300 ? ? "O2'" B U 601 ? ? 2.03 27 6 HD11 A LEU 331 ? ? H3 B U 602 ? ? 1.08 28 6 HD12 A LEU 331 ? ? H3 B U 602 ? ? 1.16 29 6 CD1 A LEU 331 ? ? H3 B U 602 ? ? 1.22 30 6 HH A TYR 302 ? ? "H4'" B U 603 ? ? 1.33 31 6 CD1 A LEU 331 ? ? N3 B U 602 ? ? 2.19 32 7 OD1 A ASP 231 ? ? O4 B U 607 ? ? 1.84 33 8 OD1 A ASP 272 ? ? HZ2 A LYS 292 ? ? 1.51 34 8 OD1 A ASP 231 ? ? O4 B U 607 ? ? 1.68 35 9 HZ1 A LYS 300 ? ? "HO2'" B U 601 ? ? 1.12 36 9 OD2 A ASP 231 ? ? O4 B U 607 ? ? 2.07 37 10 HZ3 A LYS 300 ? ? "HO2'" B U 601 ? ? 0.95 38 10 NZ A LYS 300 ? ? "HO2'" B U 601 ? ? 1.07 39 10 HH A TYR 302 ? ? "H4'" B U 603 ? ? 1.18 40 10 HZ1 A LYS 300 ? ? "HO2'" B U 601 ? ? 1.33 41 10 HZ2 A LYS 300 ? ? "HO2'" B U 601 ? ? 1.34 42 10 OD1 A ASP 231 ? ? O4 B U 607 ? ? 1.59 43 10 HZ2 A LYS 300 ? ? O2 B U 601 ? ? 1.59 44 10 HZ3 A LYS 300 ? ? "O2'" B U 601 ? ? 1.60 45 10 NZ A LYS 300 ? ? "O2'" B U 601 ? ? 2.00 46 10 NZ A LYS 300 ? ? O2 B U 601 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B U 604 ? ? P B U 605 ? ? 1.684 1.607 0.077 0.012 Y 2 4 "O3'" B U 604 ? ? "C3'" B U 604 ? ? 1.516 1.427 0.089 0.012 N 3 4 "O3'" B U 604 ? ? P B U 605 ? ? 1.696 1.607 0.089 0.012 Y 4 5 "O3'" B U 604 ? ? "C3'" B U 604 ? ? 1.503 1.427 0.076 0.012 N 5 5 "O3'" B U 604 ? ? P B U 605 ? ? 1.683 1.607 0.076 0.012 Y 6 6 "O3'" B U 604 ? ? P B U 605 ? ? 1.702 1.607 0.095 0.012 Y 7 7 "O3'" B U 604 ? ? "C3'" B U 604 ? ? 1.509 1.427 0.082 0.012 N 8 7 "O3'" B U 604 ? ? P B U 605 ? ? 1.689 1.607 0.082 0.012 Y 9 8 "O3'" B U 604 ? ? P B U 605 ? ? 1.686 1.607 0.079 0.012 Y 10 9 "O3'" B U 604 ? ? P B U 605 ? ? 1.688 1.607 0.081 0.012 Y 11 10 "O3'" B U 604 ? ? "C3'" B U 604 ? ? 1.501 1.427 0.074 0.012 N 12 10 "O3'" B U 604 ? ? P B U 605 ? ? 1.680 1.607 0.073 0.012 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 149 ? ? -95.11 46.75 2 1 PRO A 229 ? ? -57.38 175.04 3 1 LEU A 235 ? ? 62.01 82.81 4 1 MET A 238 ? ? 67.16 -174.77 5 1 GLU A 240 ? ? -56.18 105.61 6 1 ASN A 241 ? ? -141.67 -56.32 7 1 SER A 243 ? ? -131.84 -88.33 8 1 VAL A 244 ? ? 61.73 -81.53 9 1 TYR A 245 ? ? -178.10 -61.52 10 1 SER A 251 ? ? 70.44 104.02 11 1 VAL A 253 ? ? -178.81 113.00 12 1 ASP A 256 ? ? -66.92 99.04 13 1 ALA A 258 ? ? 62.01 85.48 14 1 SER A 281 ? ? -50.61 -9.99 15 1 SER A 336 ? ? -119.41 -77.84 16 2 ARG A 149 ? ? -136.16 -150.21 17 2 LEU A 187 ? ? -111.96 70.47 18 2 ALA A 188 ? ? 107.73 151.32 19 2 PRO A 229 ? ? -57.44 175.17 20 2 ALA A 258 ? ? -142.82 54.46 21 2 HIS A 259 ? ? -80.32 30.98 22 2 SER A 281 ? ? -49.90 -10.33 23 2 SER A 336 ? ? -119.36 -78.77 24 3 ARG A 149 ? ? -144.11 -156.76 25 3 PRO A 229 ? ? -57.40 175.19 26 3 GLN A 233 ? ? 57.74 82.72 27 3 LEU A 235 ? ? 63.12 101.63 28 3 SER A 239 ? ? 62.09 -9.61 29 3 VAL A 254 ? ? 63.33 74.30 30 3 SER A 336 ? ? -119.36 -77.84 31 4 ARG A 149 ? ? -179.66 16.54 32 4 PRO A 229 ? ? -57.38 175.18 33 4 LEU A 235 ? ? 58.75 75.41 34 4 PRO A 236 ? ? -78.69 46.60 35 4 PRO A 247 ? ? -76.51 31.29 36 4 HIS A 259 ? ? -92.79 31.12 37 4 SER A 336 ? ? -119.40 -78.29 38 4 LYS A 340 ? ? -167.52 -56.18 39 5 PRO A 229 ? ? -57.31 174.90 40 5 HIS A 230 ? ? -104.29 -80.37 41 5 ASP A 231 ? ? 46.28 -98.13 42 5 TYR A 232 ? ? -81.13 -72.55 43 5 SER A 239 ? ? -120.41 -58.50 44 5 SER A 243 ? ? 69.71 161.42 45 5 VAL A 244 ? ? 67.37 99.14 46 5 SER A 251 ? ? 50.66 85.10 47 5 VAL A 254 ? ? 63.60 89.22 48 5 ALA A 258 ? ? -146.62 -69.93 49 5 HIS A 259 ? ? 89.65 30.43 50 5 SER A 336 ? ? -119.47 -79.03 51 5 ASN A 341 ? ? 70.74 100.70 52 6 PRO A 229 ? ? -57.39 175.26 53 6 VAL A 244 ? ? -159.79 -30.18 54 6 VAL A 249 ? ? 62.45 96.41 55 6 SER A 251 ? ? -124.42 -77.62 56 6 THR A 252 ? ? 67.83 -69.71 57 6 HIS A 259 ? ? -140.05 30.95 58 6 SER A 336 ? ? -119.37 -77.88 59 6 VAL A 337 ? ? -101.12 79.13 60 7 ARG A 149 ? ? -127.73 -152.26 61 7 PRO A 229 ? ? -57.52 175.12 62 7 GLU A 240 ? ? -85.79 -88.57 63 7 VAL A 250 ? ? 65.26 -77.21 64 7 HIS A 259 ? ? -93.83 31.02 65 7 SER A 336 ? ? -119.45 -77.68 66 8 ARG A 149 ? ? -91.75 57.47 67 8 LEU A 187 ? ? -112.42 71.39 68 8 ALA A 188 ? ? 107.13 151.10 69 8 PRO A 229 ? ? -57.43 175.18 70 8 TYR A 232 ? ? 65.71 106.54 71 8 TYR A 245 ? ? 62.59 83.10 72 8 VAL A 253 ? ? 65.05 95.39 73 8 PRO A 255 ? ? -84.34 -149.93 74 8 ALA A 258 ? ? -124.77 -71.16 75 8 HIS A 259 ? ? -140.56 31.07 76 8 SER A 336 ? ? -119.46 -78.18 77 8 VAL A 337 ? ? -168.36 -42.48 78 8 ALA A 339 ? ? -161.16 -164.94 79 9 PRO A 229 ? ? -57.21 174.82 80 9 GLN A 233 ? ? 62.01 93.75 81 9 SER A 243 ? ? 68.35 146.62 82 9 SER A 251 ? ? 71.54 170.55 83 9 ALA A 258 ? ? 70.32 105.69 84 9 HIS A 259 ? ? -98.21 31.02 85 9 SER A 281 ? ? -52.40 -7.73 86 9 SER A 336 ? ? -119.40 -75.90 87 9 VAL A 337 ? ? 79.04 120.55 88 10 PRO A 229 ? ? -57.16 174.78 89 10 MET A 238 ? ? -109.62 -60.48 90 10 PRO A 242 ? ? -49.91 104.52 91 10 VAL A 253 ? ? 62.64 72.40 92 10 SER A 281 ? ? -50.36 -9.62 93 10 SER A 336 ? ? -119.44 -77.59 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 145 ? A GLY 1 2 1 Y 1 A ALA 146 ? A ALA 2 3 1 Y 1 A MET 147 ? A MET 3 4 2 Y 1 A GLY 145 ? A GLY 1 5 2 Y 1 A ALA 146 ? A ALA 2 6 2 Y 1 A MET 147 ? A MET 3 7 3 Y 1 A GLY 145 ? A GLY 1 8 3 Y 1 A ALA 146 ? A ALA 2 9 3 Y 1 A MET 147 ? A MET 3 10 4 Y 1 A GLY 145 ? A GLY 1 11 4 Y 1 A ALA 146 ? A ALA 2 12 4 Y 1 A MET 147 ? A MET 3 13 5 Y 1 A GLY 145 ? A GLY 1 14 5 Y 1 A ALA 146 ? A ALA 2 15 5 Y 1 A MET 147 ? A MET 3 16 6 Y 1 A GLY 145 ? A GLY 1 17 6 Y 1 A ALA 146 ? A ALA 2 18 6 Y 1 A MET 147 ? A MET 3 19 7 Y 1 A GLY 145 ? A GLY 1 20 7 Y 1 A ALA 146 ? A ALA 2 21 7 Y 1 A MET 147 ? A MET 3 22 8 Y 1 A GLY 145 ? A GLY 1 23 8 Y 1 A ALA 146 ? A ALA 2 24 8 Y 1 A MET 147 ? A MET 3 25 9 Y 1 A GLY 145 ? A GLY 1 26 9 Y 1 A ALA 146 ? A ALA 2 27 9 Y 1 A MET 147 ? A MET 3 28 10 Y 1 A GLY 145 ? A GLY 1 29 10 Y 1 A ALA 146 ? A ALA 2 30 10 Y 1 A MET 147 ? A MET 3 #