HEADER LIPID BINDING PROTEIN 27-APR-11 2YH5 TITLE STRUCTURE OF THE C-TERMINAL DOMAIN OF BAMC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DAPX PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 25-143; COMPND 5 SYNONYM: BAMC; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24D KEYWDS LIPID BINDING PROTEIN, LIPOPROTEIN, BAM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,R.ALBRECHT REVDAT 3 05-FEB-14 2YH5 1 REMARK REVDAT 2 10-AUG-11 2YH5 1 JRNL REMARK VERSN REVDAT 1 25-MAY-11 2YH5 0 JRNL AUTH R.ALBRECHT,K.ZETH JRNL TITL STRUCTURAL BASIS OF OUTER MEMBRANE PROTEIN JRNL TITL 2 BIOGENESIS IN BACTERIA. JRNL REF J.BIOL.CHEM. V. 286 27792 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21586578 JRNL DOI 10.1074/JBC.M111.238931 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAAIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 25297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.14828 REMARK 3 R VALUE (WORKING SET) : 0.14643 REMARK 3 FREE R VALUE : 0.18387 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.250 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.282 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1852 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.251 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.273 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.829 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03 REMARK 3 B22 (A**2) : 0.48 REMARK 3 B33 (A**2) : -0.56 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.13 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 973 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 633 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1333 ; 2.157 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1569 ; 1.197 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 132 ; 6.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;43.347 ;26.047 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 164 ;15.571 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;19.244 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 153 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1098 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 176 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 619 ; 2.884 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 250 ; 0.951 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1002 ; 4.325 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 354 ; 6.290 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 325 ; 9.119 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1606 ; 2.582 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6220 25.3460 3.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.0900 T22: 0.0725 REMARK 3 T33: 0.0942 T12: 0.0004 REMARK 3 T13: 0.0155 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.1937 L22: 0.3904 REMARK 3 L33: 1.4455 L12: 0.1203 REMARK 3 L13: -0.0357 L23: -0.6957 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.0209 S13: 0.1205 REMARK 3 S21: -0.0866 S22: -0.0453 S23: 0.0283 REMARK 3 S31: 0.1805 S32: 0.0282 S33: 0.0611 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5970 30.5200 11.4740 REMARK 3 T TENSOR REMARK 3 T11: 0.0506 T22: 0.0765 REMARK 3 T33: 0.0562 T12: 0.0288 REMARK 3 T13: 0.0089 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.9904 L22: 0.8036 REMARK 3 L33: 2.2566 L12: 0.0469 REMARK 3 L13: -0.0878 L23: -0.5438 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: -0.0114 S13: 0.0839 REMARK 3 S21: 0.0533 S22: 0.0268 S23: 0.0625 REMARK 3 S31: -0.0611 S32: -0.1834 S33: -0.0768 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5470 25.7670 15.6000 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0457 REMARK 3 T33: 0.0747 T12: 0.0073 REMARK 3 T13: -0.0024 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.7136 L22: 0.5618 REMARK 3 L33: 1.2965 L12: -0.0085 REMARK 3 L13: -0.4335 L23: -0.0230 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0331 S13: -0.0594 REMARK 3 S21: 0.0662 S22: -0.0304 S23: -0.0164 REMARK 3 S31: -0.0489 S32: -0.0602 S33: 0.0361 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1290 20.6570 13.0660 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0505 REMARK 3 T33: 0.0511 T12: 0.0200 REMARK 3 T13: 0.0062 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 5.2979 L22: 1.8073 REMARK 3 L33: 2.4755 L12: 2.3505 REMARK 3 L13: 0.8803 L23: 1.4764 REMARK 3 S TENSOR REMARK 3 S11: -0.0824 S12: 0.1905 S13: -0.0859 REMARK 3 S21: 0.0474 S22: 0.0100 S23: 0.0351 REMARK 3 S31: 0.1350 S32: 0.0621 S33: 0.0723 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2YH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-11. REMARK 100 THE PDBE ID CODE IS EBI-48131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PILATUS6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.28 REMARK 200 RESOLUTION RANGE LOW (A) : 1.31 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.1 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.2 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP, DM, BUCCANEER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG1000, 0.1 M MES PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 204 CA CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 205 O HOH A 2004 2.09 REMARK 500 CB GLN A 207 O HOH A 2005 2.15 REMARK 500 NH2 ARG A 230 O HOH A 2019 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 254 CB VAL A 254 CG2 -0.167 REMARK 500 SER A 276 CB SER A 276 OG -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 212 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 247 NE - CZ - NH1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 247 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 287 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 287 -94.84 68.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1324 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YH3 RELATED DB: PDB REMARK 900 THE STRUCTURE OF BAMB FROM E. COLI REMARK 900 RELATED ID: 2YH6 RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF BAMC FROM E. REMARK 900 COLI REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL SEQUENCE WAS ASSIGNED DUE TO SUBTILISIN REMARK 999 TREATMENT AND X-RAY DATA DBREF 2YH5 A 202 320 UNP Q47548 Q47548_ECOLX 25 143 SEQADV 2YH5 LEU A 321 UNP Q47548 EXPRESSION TAG SEQADV 2YH5 GLU A 322 UNP Q47548 EXPRESSION TAG SEQADV 2YH5 HIS A 323 UNP Q47548 EXPRESSION TAG SEQADV 2YH5 HIS A 324 UNP Q47548 EXPRESSION TAG SEQADV 2YH5 HIS A 325 UNP Q47548 EXPRESSION TAG SEQADV 2YH5 HIS A 326 UNP Q47548 EXPRESSION TAG SEQADV 2YH5 HIS A 327 UNP Q47548 EXPRESSION TAG SEQADV 2YH5 HIS A 328 UNP Q47548 EXPRESSION TAG SEQRES 1 A 127 THR THR MET ASP VAL GLN SER ALA ALA ASP ASP THR GLY SEQRES 2 A 127 LEU PRO MET LEU VAL VAL ARG GLY PRO PHE ASN VAL VAL SEQRES 3 A 127 TRP GLN ARG LEU PRO ALA ALA LEU GLU LYS VAL GLY MET SEQRES 4 A 127 LYS VAL THR ASP SER THR ARG SER GLN GLY ASN MET ALA SEQRES 5 A 127 VAL THR TYR LYS PRO LEU SER ASP SER ASP TRP GLN GLU SEQRES 6 A 127 LEU GLY ALA SER ASP PRO GLY LEU ALA SER GLY ASP TYR SEQRES 7 A 127 LYS LEU GLN VAL GLY ASP LEU ASP ASN ARG SER SER LEU SEQRES 8 A 127 GLN PHE ILE ASP PRO LYS GLY HIS THR LEU THR GLN SER SEQRES 9 A 127 GLN ASN ASP ALA LEU VAL ALA VAL PHE GLN ALA ALA PHE SEQRES 10 A 127 SER LYS LEU GLU HIS HIS HIS HIS HIS HIS HET PO4 A1323 5 HET PO4 A1324 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 2(O4 P 3-) FORMUL 3 HOH *60(H2 O) HELIX 1 1 PRO A 223 VAL A 238 1 16 HELIX 2 2 ARG A 247 GLN A 249 5 3 HELIX 3 3 SER A 260 GLY A 268 1 9 HELIX 4 4 THR A 303 GLU A 322 1 20 SHEET 1 AA 6 VAL A 206 ALA A 210 0 SHEET 2 AA 6 PRO A 216 ARG A 221 -1 O MET A 217 N ALA A 209 SHEET 3 AA 6 ARG A 289 ILE A 295 -1 O SER A 290 N VAL A 220 SHEET 4 AA 6 GLY A 277 LEU A 286 -1 O LYS A 280 N ILE A 295 SHEET 5 AA 6 ASN A 251 TYR A 256 -1 O MET A 252 N LEU A 281 SHEET 6 AA 6 MET A 240 THR A 246 -1 O LYS A 241 N THR A 255 SITE 1 AC1 5 THR A 213 TRP A 228 SER A 245 THR A 246 SITE 2 AC1 5 ARG A 247 SITE 1 AC2 8 PRO A 223 PHE A 224 ASN A 225 VAL A 226 SITE 2 AC2 8 ALA A 275 TYR A 279 GLN A 306 HOH A2060 CRYST1 29.740 59.120 31.060 90.00 116.37 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033625 0.000000 0.016670 0.00000 SCALE2 0.000000 0.016915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035935 0.00000