HEADER HYDROLASE 16-MAY-11 2YIK TITLE CATALYTIC DOMAIN OF CLOSTRIDIUM THERMOCELLUM CELT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-611; COMPND 5 EC: 3.2.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PHTPP15 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-Y.TSAI,M.M.KESAVULU,C.-D.HSIAO REVDAT 3 20-DEC-23 2YIK 1 REMARK LINK REVDAT 2 28-MAR-12 2YIK 1 JRNL REVDAT 1 29-FEB-12 2YIK 0 JRNL AUTH M.M.KESAVULU,J.-Y.TSAI,H.-L.LEE,P.-H.LIANG,C.-D.HSIAO JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF THE CLOSTRIDIUM JRNL TITL 2 THERMOCELLUM CELLULASE CELT JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 310 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22349233 JRNL DOI 10.1107/S0907444912001990 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 236455.370 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 38800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1963 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4793 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 263 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.17000 REMARK 3 B22 (A**2) : 5.17000 REMARK 3 B33 (A**2) : -10.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.070 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 63.63 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED. REMARK 4 REMARK 4 2YIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1290048224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 310 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42562 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IA6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.96000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.43000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.94000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.43000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.98000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 119.94000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.43000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.98000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2218 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 LEU A 5 REMARK 465 PHE A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 PHE A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 ILE A 17 REMARK 465 VAL A 18 REMARK 465 ILE A 19 REMARK 465 THR A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 ILE A 24 REMARK 465 VAL A 25 REMARK 465 SER A 26 REMARK 465 PHE A 27 REMARK 465 ASN A 28 REMARK 465 THR A 29 REMARK 465 VAL A 30 REMARK 465 SER A 31 REMARK 465 THR A 32 REMARK 465 SER A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 GLY A 36 REMARK 465 GLU A 37 REMARK 465 VAL A 532 REMARK 465 PRO A 533 REMARK 465 VAL A 534 REMARK 465 PRO A 535 REMARK 465 PRO A 536 REMARK 465 THR A 537 REMARK 465 PRO A 538 REMARK 465 THR A 539 REMARK 465 PRO A 540 REMARK 465 PRO A 541 REMARK 465 ASP A 542 REMARK 465 THR A 543 REMARK 465 GLN A 544 REMARK 465 ILE A 545 REMARK 465 VAL A 546 REMARK 465 TYR A 547 REMARK 465 GLY A 548 REMARK 465 ASP A 549 REMARK 465 LEU A 550 REMARK 465 ASN A 551 REMARK 465 GLY A 552 REMARK 465 ASP A 553 REMARK 465 GLN A 554 REMARK 465 LYS A 555 REMARK 465 VAL A 556 REMARK 465 THR A 557 REMARK 465 SER A 558 REMARK 465 THR A 559 REMARK 465 ASP A 560 REMARK 465 TYR A 561 REMARK 465 THR A 562 REMARK 465 MET A 563 REMARK 465 LEU A 564 REMARK 465 LYS A 565 REMARK 465 ARG A 566 REMARK 465 TYR A 567 REMARK 465 LEU A 568 REMARK 465 MET A 569 REMARK 465 LYS A 570 REMARK 465 SER A 571 REMARK 465 ILE A 572 REMARK 465 ASP A 573 REMARK 465 ARG A 574 REMARK 465 PHE A 575 REMARK 465 ASN A 576 REMARK 465 THR A 577 REMARK 465 SER A 578 REMARK 465 GLU A 579 REMARK 465 GLN A 580 REMARK 465 ALA A 581 REMARK 465 ALA A 582 REMARK 465 ASP A 583 REMARK 465 LEU A 584 REMARK 465 ASN A 585 REMARK 465 ARG A 586 REMARK 465 ASP A 587 REMARK 465 GLY A 588 REMARK 465 LYS A 589 REMARK 465 ILE A 590 REMARK 465 ASN A 591 REMARK 465 SER A 592 REMARK 465 THR A 593 REMARK 465 ASP A 594 REMARK 465 LEU A 595 REMARK 465 THR A 596 REMARK 465 ILE A 597 REMARK 465 LEU A 598 REMARK 465 LYS A 599 REMARK 465 ARG A 600 REMARK 465 TYR A 601 REMARK 465 LEU A 602 REMARK 465 LEU A 603 REMARK 465 TYR A 604 REMARK 465 SER A 605 REMARK 465 ILE A 606 REMARK 465 PRO A 607 REMARK 465 SER A 608 REMARK 465 LEU A 609 REMARK 465 PRO A 610 REMARK 465 ILE A 611 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 531 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2172 O HOH A 2172 7555 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 136 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 PRO A 269 C - N - CA ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 117 -108.31 -137.72 REMARK 500 ASP A 237 74.43 -150.93 REMARK 500 LYS A 270 -102.76 13.27 REMARK 500 TRP A 314 -153.25 -111.25 REMARK 500 ASP A 320 103.49 -167.86 REMARK 500 ASP A 337 30.29 -146.20 REMARK 500 ASN A 352 68.08 33.24 REMARK 500 ASP A 483 17.50 58.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1533 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 56 SG REMARK 620 2 CYS A 72 SG 118.5 REMARK 620 3 HIS A 73 ND1 111.9 113.0 REMARK 620 4 HIS A 115 NE2 103.7 100.9 107.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1531 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 101 OD1 REMARK 620 2 ASP A 103 OD1 78.4 REMARK 620 3 ASP A 103 OD2 91.8 46.5 REMARK 620 4 ASP A 105 OD1 82.3 116.4 74.7 REMARK 620 5 LYS A 107 O 89.6 156.3 155.8 81.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1333 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 277 O REMARK 620 2 ASP A 280 OD1 83.0 REMARK 620 3 ASP A 280 OD2 132.0 49.1 REMARK 620 4 ASP A 281 OD2 78.9 87.9 97.3 REMARK 620 5 HOH A2203 O 76.9 146.1 142.1 114.2 REMARK 620 6 HOH A2209 O 146.9 122.6 76.6 81.4 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1332 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 337 O REMARK 620 2 ASP A 337 OD2 79.4 REMARK 620 3 SER A 340 O 83.5 86.3 REMARK 620 4 GLU A 344 OE1 159.4 81.5 87.6 REMARK 620 5 GLU A 344 OE2 151.9 125.3 108.9 48.7 REMARK 620 6 HOH A2243 O 81.2 160.5 88.8 117.2 74.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1533 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XE9 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF CLOSTRIDIUM THERMOCELLUM CELLULASE CELT DBREF 2YIK A 1 611 UNP Q8VV73 Q8VV73_CLOTM 1 611 SEQRES 1 A 611 MET ARG LYS ASN LEU PHE ALA LYS ARG ALA VAL ALA PHE SEQRES 2 A 611 LEU LEU GLY ILE VAL ILE THR ALA ALA GLY ILE VAL SER SEQRES 3 A 611 PHE ASN THR VAL SER THR SER ALA ALA GLY GLU TYR ASN SEQRES 4 A 611 TYR ALA LYS ALA LEU GLN TYR SER MET PHE PHE TYR ASP SEQRES 5 A 611 ALA ASN MET CYS GLY THR GLY VAL ASP GLU ASN SER LEU SEQRES 6 A 611 LEU SER TRP ARG GLY ASP CYS HIS VAL TYR ASP ALA ARG SEQRES 7 A 611 LEU PRO LEU ASP SER GLN ASN THR ASN MET SER ASP GLY SEQRES 8 A 611 PHE ILE SER SER ASN ARG SER VAL LEU ASP PRO ASP GLY SEQRES 9 A 611 ASP GLY LYS VAL ASP VAL SER GLY GLY PHE HIS ASP ALA SEQRES 10 A 611 GLY ASP HIS VAL LYS PHE GLY LEU PRO GLU ALA TYR ALA SEQRES 11 A 611 ALA SER THR VAL GLY TRP GLY TYR TYR GLU PHE LYS ASP SEQRES 12 A 611 GLN PHE ARG ALA THR GLY GLN ALA VAL HIS ALA GLU VAL SEQRES 13 A 611 ILE LEU ARG TYR PHE ASN ASP TYR PHE MET ARG CYS THR SEQRES 14 A 611 PHE ARG ASP ALA SER GLY ASN VAL VAL ALA PHE CYS HIS SEQRES 15 A 611 GLN VAL GLY ASP GLY ASP ILE ASP HIS ALA PHE TRP GLY SEQRES 16 A 611 ALA PRO GLU ASN ASP THR MET PHE ARG ARG GLY TRP PHE SEQRES 17 A 611 ILE THR LYS GLU LYS PRO GLY THR ASP ILE ILE SER ALA SEQRES 18 A 611 THR ALA ALA SER LEU ALA ILE ASN TYR MET ASN PHE LYS SEQRES 19 A 611 ASP THR ASP PRO GLN TYR ALA ALA LYS SER LEU ASP TYR SEQRES 20 A 611 ALA LYS ALA LEU PHE ASP PHE ALA GLU LYS ASN PRO LYS SEQRES 21 A 611 GLY VAL VAL GLN GLY GLU ASP GLY PRO LYS GLY TYR TYR SEQRES 22 A 611 GLY SER SER LYS TRP GLN ASP ASP TYR CYS TRP ALA ALA SEQRES 23 A 611 ALA TRP LEU TYR LEU ALA THR GLN ASN GLU HIS TYR LEU SEQRES 24 A 611 ASP GLU ALA PHE LYS TYR TYR ASP TYR TYR ALA PRO PRO SEQRES 25 A 611 GLY TRP ILE HIS CYS TRP ASN ASP VAL TRP SER GLY THR SEQRES 26 A 611 ALA CYS ILE LEU ALA GLU ILE ASN ASP LEU TYR ASP LYS SEQRES 27 A 611 ASP SER GLN ASN PHE GLU ASP ARG TYR LYS ARG ALA SER SEQRES 28 A 611 ASN LYS ASN GLN TRP GLU GLN ILE ASP PHE TRP LYS PRO SEQRES 29 A 611 ILE GLN ASP LEU LEU ASP LYS TRP SER GLY GLY GLY ILE SEQRES 30 A 611 THR VAL THR PRO GLY GLY TYR VAL PHE LEU ASN GLN TRP SEQRES 31 A 611 GLY SER ALA ARG TYR ASN THR ALA ALA GLN LEU ILE ALA SEQRES 32 A 611 LEU VAL TYR ASP LYS HIS HIS GLY ASP THR PRO SER LYS SEQRES 33 A 611 TYR ALA ASN TRP ALA ARG SER GLN MET ASP TYR LEU LEU SEQRES 34 A 611 GLY LYS ASN PRO LEU ASN ARG CYS TYR VAL VAL GLY TYR SEQRES 35 A 611 SER SER ASN SER VAL LYS TYR PRO HIS HIS ARG ALA ALA SEQRES 36 A 611 SER GLY LEU LYS ASP ALA ASN ASP SER SER PRO HIS LYS SEQRES 37 A 611 TYR VAL LEU TYR GLY ALA LEU VAL GLY GLY PRO ASP ALA SEQRES 38 A 611 SER ASP GLN HIS VAL ASP ARG THR ASN ASP TYR ILE TYR SEQRES 39 A 611 ASN GLU VAL ALA ILE ASP TYR ASN ALA ALA PHE VAL GLY SEQRES 40 A 611 ALA CYS ALA GLY LEU TYR ARG PHE PHE GLY ASP SER SER SEQRES 41 A 611 MET GLN ILE ASP PRO SER MET PRO SER HIS ASN VAL PRO SEQRES 42 A 611 VAL PRO PRO THR PRO THR PRO PRO ASP THR GLN ILE VAL SEQRES 43 A 611 TYR GLY ASP LEU ASN GLY ASP GLN LYS VAL THR SER THR SEQRES 44 A 611 ASP TYR THR MET LEU LYS ARG TYR LEU MET LYS SER ILE SEQRES 45 A 611 ASP ARG PHE ASN THR SER GLU GLN ALA ALA ASP LEU ASN SEQRES 46 A 611 ARG ASP GLY LYS ILE ASN SER THR ASP LEU THR ILE LEU SEQRES 47 A 611 LYS ARG TYR LEU LEU TYR SER ILE PRO SER LEU PRO ILE HET CA A1332 1 HET CA A1333 1 HET CA A1531 1 HET ZN A1533 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 CA 3(CA 2+) FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *343(H2 O) HELIX 1 1 ASN A 39 MET A 48 1 10 HELIX 2 2 MET A 48 MET A 55 1 8 HELIX 3 3 GLY A 59 SER A 64 1 6 HELIX 4 4 HIS A 73 ARG A 78 5 6 HELIX 5 5 SER A 89 ASP A 101 1 13 HELIX 6 6 GLY A 124 PHE A 141 1 18 HELIX 7 7 PHE A 141 THR A 148 1 8 HELIX 8 8 GLN A 150 CYS A 168 1 19 HELIX 9 9 ASP A 186 HIS A 191 1 6 HELIX 10 10 ALA A 196 ASP A 200 5 5 HELIX 11 11 GLY A 215 LYS A 234 1 20 HELIX 12 12 ASP A 237 ASN A 258 1 22 HELIX 13 13 GLN A 264 GLY A 268 5 5 HELIX 14 14 TRP A 278 GLN A 294 1 17 HELIX 15 15 ASN A 295 TYR A 306 1 12 HELIX 16 16 VAL A 321 ASP A 337 1 17 HELIX 17 17 GLN A 341 SER A 351 1 11 HELIX 18 18 TRP A 362 GLY A 374 1 13 HELIX 19 19 GLY A 391 HIS A 409 1 19 HELIX 20 20 SER A 415 LEU A 429 1 15 HELIX 21 21 HIS A 452 GLY A 457 1 6 HELIX 22 22 ALA A 498 GLY A 517 1 20 SHEET 1 AA 2 LEU A 79 PRO A 80 0 SHEET 2 AA 2 LYS A 107 VAL A 108 -1 O VAL A 108 N LEU A 79 SHEET 1 AB 2 LYS A 122 PHE A 123 0 SHEET 2 AB 2 VAL A 177 VAL A 184 -1 O VAL A 184 N LYS A 122 SHEET 1 AC 2 THR A 169 ARG A 171 0 SHEET 2 AC 2 VAL A 177 VAL A 184 -1 N VAL A 178 O PHE A 170 SHEET 1 AD 2 GLY A 206 ILE A 209 0 SHEET 2 AD 2 VAL A 177 VAL A 184 -1 O PHE A 180 N ILE A 209 LINK SG CYS A 56 ZN ZN A1533 1555 1555 2.43 LINK SG CYS A 72 ZN ZN A1533 1555 1555 2.32 LINK ND1 HIS A 73 ZN ZN A1533 1555 1555 2.06 LINK OD1 ASP A 101 CA CA A1531 1555 1555 2.56 LINK OD1 ASP A 103 CA CA A1531 1555 1555 2.65 LINK OD2 ASP A 103 CA CA A1531 1555 1555 2.87 LINK OD1 ASP A 105 CA CA A1531 1555 1555 2.53 LINK O LYS A 107 CA CA A1531 1555 1555 2.41 LINK NE2 HIS A 115 ZN ZN A1533 1555 1555 2.25 LINK O LYS A 277 CA CA A1333 1555 1555 2.48 LINK OD1 ASP A 280 CA CA A1333 1555 1555 2.57 LINK OD2 ASP A 280 CA CA A1333 1555 1555 2.72 LINK OD2 ASP A 281 CA CA A1333 1555 1555 2.59 LINK O ASP A 337 CA CA A1332 1555 1555 2.44 LINK OD2 ASP A 337 CA CA A1332 1555 1555 2.63 LINK O SER A 340 CA CA A1332 1555 1555 2.45 LINK OE1 GLU A 344 CA CA A1332 1555 1555 2.66 LINK OE2 GLU A 344 CA CA A1332 1555 1555 2.69 LINK CA CA A1332 O HOH A2243 1555 1555 2.63 LINK CA CA A1333 O HOH A2203 1555 1555 2.59 LINK CA CA A1333 O HOH A2209 1555 1555 2.60 SITE 1 AC1 5 ASN A 333 ASP A 337 SER A 340 GLU A 344 SITE 2 AC1 5 HOH A2243 SITE 1 AC2 5 LYS A 277 ASP A 280 ASP A 281 HOH A2203 SITE 2 AC2 5 HOH A2209 SITE 1 AC3 4 ASP A 101 ASP A 103 ASP A 105 LYS A 107 SITE 1 AC4 4 CYS A 56 CYS A 72 HIS A 73 HIS A 115 CRYST1 96.860 96.860 159.920 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006253 0.00000