HEADER RNA BINDING PROTEIN/RNA 24-MAY-11 2YJY TITLE A SPECIFIC AND MODULAR BINDING CODE FOR CYTOSINE RECOGNITION IN PUF TITLE 2 DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUMILIO HOMOLOG 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HOMOLOGY DOMAIN, RESIDUES 828-1176; COMPND 5 SYNONYM: HSPUM, PUMILIO-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-R(*AP*UP*UP*GP*CP*AP*UP*AP*UP*AP)-3'; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: HPUM1 R6C RNA; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PTYB3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS RNA BINDING PROTEIN-RNA COMPLEX, NANOS RESPONSE ELEMENT EXPDTA X-RAY DIFFRACTION AUTHOR S.DONG,Y.WANG,C.CASSIDY-AMSTUTZ,G.LU,C.QIU,R.BIGLER,M.JEZYK,C.LI, AUTHOR 2 T.M.T.HALL,Z.WANG REVDAT 4 20-DEC-23 2YJY 1 REMARK REVDAT 3 28-OCT-15 2YJY 1 SOURCE REVDAT 2 03-AUG-11 2YJY 1 JRNL REMARK VERSN REVDAT 1 08-JUN-11 2YJY 0 JRNL AUTH S.DONG,Y.WANG,C.CASSIDY-AMSTUTZ,G.LU,R.BIGLER,M.R.JEZYK, JRNL AUTH 2 C.LI,T.M.HALL,Z.WANG JRNL TITL SPECIFIC AND MODULAR BINDING CODE FOR CYTOSINE RECOGNITION JRNL TITL 2 IN PUMILIO/FBF (PUF) RNA-BINDING DOMAINS. JRNL REF J.BIOL.CHEM. V. 286 26732 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21653694 JRNL DOI 10.1074/JBC.M111.244889 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 3 NUMBER OF REFLECTIONS : 20661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9779 - 5.1814 0.83 2514 142 0.2038 0.3014 REMARK 3 2 5.1814 - 4.1187 0.90 2611 143 0.1830 0.2787 REMARK 3 3 4.1187 - 3.5998 0.92 2580 142 0.1940 0.2495 REMARK 3 4 3.5998 - 3.2714 0.93 2597 147 0.2238 0.3122 REMARK 3 5 3.2714 - 3.0374 0.92 2597 119 0.2304 0.3797 REMARK 3 6 3.0374 - 2.8586 0.88 2439 131 0.2200 0.3524 REMARK 3 7 2.8586 - 2.7156 0.85 2333 123 0.2291 0.3183 REMARK 3 8 2.7156 - 2.5975 0.70 1927 116 0.2321 0.3652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 50.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 2.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.78980 REMARK 3 B22 (A**2) : -8.41010 REMARK 3 B33 (A**2) : 11.19990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6060 REMARK 3 ANGLE : 1.092 8267 REMARK 3 CHIRALITY : 0.074 936 REMARK 3 PLANARITY : 0.003 1003 REMARK 3 DIHEDRAL : 20.984 2365 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1290048409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20661 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 24.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1M8Y REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.2M SODIUM TARTRATE, REMARK 280 0.1M BIS-TRIS PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.89800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 172.36200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 172.36200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.89800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 1043 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLN 1047 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASN 1043 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLN 1047 TO ARG REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 827 REMARK 465 GLU A 1165 REMARK 465 LYS A 1166 REMARK 465 TYR A 1167 REMARK 465 TYR A 1168 REMARK 465 MET A 1169 REMARK 465 LYS A 1170 REMARK 465 ASN A 1171 REMARK 465 GLY A 1172 REMARK 465 VAL A 1173 REMARK 465 ASP A 1174 REMARK 465 LEU A 1175 REMARK 465 GLY A 1176 REMARK 465 MET B 827 REMARK 465 MET B 1169 REMARK 465 LYS B 1170 REMARK 465 ASN B 1171 REMARK 465 GLY B 1172 REMARK 465 VAL B 1173 REMARK 465 ASP B 1174 REMARK 465 LEU B 1175 REMARK 465 GLY B 1176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 872 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 847 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 872 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 907 CE LYS B 940 1.54 REMARK 500 OE2 GLU B 907 NZ LYS B 940 1.85 REMARK 500 OD2 ASP A 1106 OG1 THR A 1114 1.97 REMARK 500 ND2 ASN B 838 NH2 ARG B 840 2.07 REMARK 500 OE2 GLU B 907 CD LYS B 940 2.09 REMARK 500 O ASN B 843 NE2 GLN B 845 2.13 REMARK 500 NH2 ARG B 829 CZ ARG B 837 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U C 0 N1 - C1' - C2' ANGL. DEV. = -8.6 DEGREES REMARK 500 U C 1 N1 - C1' - C2' ANGL. DEV. = -11.6 DEGREES REMARK 500 U D 1 N1 - C1' - C2' ANGL. DEV. = -13.3 DEGREES REMARK 500 U D 5 O4' - C1' - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 A D 6 N9 - C1' - C2' ANGL. DEV. = -6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 876 -58.48 -27.27 REMARK 500 HIS A 960 30.58 -142.63 REMARK 500 ASP A1020 -73.69 -60.09 REMARK 500 ARG A1066 141.43 -39.15 REMARK 500 ALA A1111 -38.59 -35.67 REMARK 500 ALA A1132 104.88 -53.81 REMARK 500 HIS A1142 -55.87 -26.36 REMARK 500 THR A1150 -13.16 -49.34 REMARK 500 ASN B 839 31.73 82.31 REMARK 500 ALA B 850 137.63 -36.99 REMARK 500 PHE B 908 73.15 -111.66 REMARK 500 ARG B 922 115.82 -38.55 REMARK 500 GLN B1031 5.23 -62.79 REMARK 500 HIS B1052 -12.83 -153.42 REMARK 500 VAL B1086 -74.99 -53.72 REMARK 500 TYR B1156 10.86 -68.97 REMARK 500 TYR B1167 57.40 -141.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IB2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PUMILIO-HOMOLOGY DOMAIN REMARK 900 RELATED ID: 1M8Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN REMARK 900 PUMILIO1 IN COMPLEX WITH NRE2-10 RNA REMARK 900 RELATED ID: 1M8Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PUMILIO-HOMOLOGY DOMAIN REMARK 900 RELATED ID: 1M8W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN REMARK 900 PUMILIO1 IN COMPLEX WITH NRE1-19 RNA REMARK 900 RELATED ID: 1M8X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN REMARK 900 PUMILIO1 IN COMPLEX WITH NRE1-14 RNA DBREF 2YJY A 828 1176 UNP Q14671 PUM1_HUMAN 828 1176 DBREF 2YJY B 828 1176 UNP Q14671 PUM1_HUMAN 828 1176 DBREF 2YJY C -1 8 PDB 2YJY 2YJY -1 8 DBREF 2YJY D -1 8 PDB 2YJY 2YJY -1 8 SEQADV 2YJY MET A 827 UNP Q14671 EXPRESSION TAG SEQADV 2YJY SER A 1043 UNP Q14671 ASN 1043 ENGINEERED MUTATION SEQADV 2YJY ARG A 1047 UNP Q14671 GLN 1047 ENGINEERED MUTATION SEQADV 2YJY MET B 827 UNP Q14671 EXPRESSION TAG SEQADV 2YJY SER B 1043 UNP Q14671 ASN 1043 ENGINEERED MUTATION SEQADV 2YJY ARG B 1047 UNP Q14671 GLN 1047 ENGINEERED MUTATION SEQRES 1 A 350 MET GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN ASN SEQRES 2 A 350 ARG TYR PRO ASN LEU GLN LEU ARG GLU ILE ALA GLY HIS SEQRES 3 A 350 ILE MET GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE SEQRES 4 A 350 ILE GLN LEU LYS LEU GLU ARG ALA THR PRO ALA GLU ARG SEQRES 5 A 350 GLN LEU VAL PHE ASN GLU ILE LEU GLN ALA ALA TYR GLN SEQRES 6 A 350 LEU MET VAL ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS SEQRES 7 A 350 PHE PHE GLU PHE GLY SER LEU GLU GLN LYS LEU ALA LEU SEQRES 8 A 350 ALA GLU ARG ILE ARG GLY HIS VAL LEU SER LEU ALA LEU SEQRES 9 A 350 GLN MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU SEQRES 10 A 350 PHE ILE PRO SER ASP GLN GLN ASN GLU MET VAL ARG GLU SEQRES 11 A 350 LEU ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN ASN SEQRES 12 A 350 GLY ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL GLN SEQRES 13 A 350 PRO GLN SER LEU GLN PHE ILE ILE ASP ALA PHE LYS GLY SEQRES 14 A 350 GLN VAL PHE ALA LEU SER THR HIS PRO TYR GLY CYS ARG SEQRES 15 A 350 VAL ILE GLN ARG ILE LEU GLU HIS CYS LEU PRO ASP GLN SEQRES 16 A 350 THR LEU PRO ILE LEU GLU GLU LEU HIS GLN HIS THR GLU SEQRES 17 A 350 GLN LEU VAL GLN ASP GLN TYR GLY SER TYR VAL ILE ARG SEQRES 18 A 350 HIS VAL LEU GLU HIS GLY ARG PRO GLU ASP LYS SER LYS SEQRES 19 A 350 ILE VAL ALA GLU ILE ARG GLY ASN VAL LEU VAL LEU SER SEQRES 20 A 350 GLN HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS VAL SEQRES 21 A 350 THR HIS ALA SER ARG THR GLU ARG ALA VAL LEU ILE ASP SEQRES 22 A 350 GLU VAL CYS THR MET ASN ASP GLY PRO HIS SER ALA LEU SEQRES 23 A 350 TYR THR MET MET LYS ASP GLN TYR ALA ASN TYR VAL VAL SEQRES 24 A 350 GLN LYS MET ILE ASP VAL ALA GLU PRO GLY GLN ARG LYS SEQRES 25 A 350 ILE VAL MET HIS LYS ILE ARG PRO HIS ILE ALA THR LEU SEQRES 26 A 350 ARG LYS TYR THR TYR GLY LYS HIS ILE LEU ALA LYS LEU SEQRES 27 A 350 GLU LYS TYR TYR MET LYS ASN GLY VAL ASP LEU GLY SEQRES 1 B 350 MET GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN ASN SEQRES 2 B 350 ARG TYR PRO ASN LEU GLN LEU ARG GLU ILE ALA GLY HIS SEQRES 3 B 350 ILE MET GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE SEQRES 4 B 350 ILE GLN LEU LYS LEU GLU ARG ALA THR PRO ALA GLU ARG SEQRES 5 B 350 GLN LEU VAL PHE ASN GLU ILE LEU GLN ALA ALA TYR GLN SEQRES 6 B 350 LEU MET VAL ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS SEQRES 7 B 350 PHE PHE GLU PHE GLY SER LEU GLU GLN LYS LEU ALA LEU SEQRES 8 B 350 ALA GLU ARG ILE ARG GLY HIS VAL LEU SER LEU ALA LEU SEQRES 9 B 350 GLN MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU SEQRES 10 B 350 PHE ILE PRO SER ASP GLN GLN ASN GLU MET VAL ARG GLU SEQRES 11 B 350 LEU ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN ASN SEQRES 12 B 350 GLY ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL GLN SEQRES 13 B 350 PRO GLN SER LEU GLN PHE ILE ILE ASP ALA PHE LYS GLY SEQRES 14 B 350 GLN VAL PHE ALA LEU SER THR HIS PRO TYR GLY CYS ARG SEQRES 15 B 350 VAL ILE GLN ARG ILE LEU GLU HIS CYS LEU PRO ASP GLN SEQRES 16 B 350 THR LEU PRO ILE LEU GLU GLU LEU HIS GLN HIS THR GLU SEQRES 17 B 350 GLN LEU VAL GLN ASP GLN TYR GLY SER TYR VAL ILE ARG SEQRES 18 B 350 HIS VAL LEU GLU HIS GLY ARG PRO GLU ASP LYS SER LYS SEQRES 19 B 350 ILE VAL ALA GLU ILE ARG GLY ASN VAL LEU VAL LEU SER SEQRES 20 B 350 GLN HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS VAL SEQRES 21 B 350 THR HIS ALA SER ARG THR GLU ARG ALA VAL LEU ILE ASP SEQRES 22 B 350 GLU VAL CYS THR MET ASN ASP GLY PRO HIS SER ALA LEU SEQRES 23 B 350 TYR THR MET MET LYS ASP GLN TYR ALA ASN TYR VAL VAL SEQRES 24 B 350 GLN LYS MET ILE ASP VAL ALA GLU PRO GLY GLN ARG LYS SEQRES 25 B 350 ILE VAL MET HIS LYS ILE ARG PRO HIS ILE ALA THR LEU SEQRES 26 B 350 ARG LYS TYR THR TYR GLY LYS HIS ILE LEU ALA LYS LEU SEQRES 27 B 350 GLU LYS TYR TYR MET LYS ASN GLY VAL ASP LEU GLY SEQRES 1 C 10 A U U G C A U A U A SEQRES 1 D 10 A U U G C A U A U A FORMUL 5 HOH *100(H2 O) HELIX 1 32 SER A 830 ASN A 838 1 9 HELIX 2 33 GLN A 845 ALA A 850 5 6 HELIX 3 34 HIS A 852 GLN A 858 1 7 HELIX 4 35 ASP A 859 GLU A 871 1 13 HELIX 5 36 THR A 874 GLN A 887 1 14 HELIX 6 37 ALA A 888 VAL A 894 1 7 HELIX 7 38 PHE A 897 GLY A 909 1 13 HELIX 8 39 SER A 910 ARG A 922 1 13 HELIX 9 40 HIS A 924 LEU A 930 1 7 HELIX 10 41 TYR A 933 ILE A 945 1 13 HELIX 11 42 PRO A 946 GLU A 956 1 11 HELIX 12 43 HIS A 960 LYS A 966 1 7 HELIX 13 44 ASN A 969 VAL A 981 1 13 HELIX 14 45 GLN A 982 SER A 985 5 4 HELIX 15 46 LEU A 986 PHE A 993 1 8 HELIX 16 47 GLN A 996 THR A 1002 1 7 HELIX 17 48 TYR A 1005 CYS A 1017 1 13 HELIX 18 49 LEU A 1018 VAL A 1037 1 20 HELIX 19 50 ASP A 1039 GLY A 1053 1 15 HELIX 20 51 ARG A 1054 ARG A 1066 1 13 HELIX 21 52 ASN A 1068 GLN A 1074 1 7 HELIX 22 53 PHE A 1077 ALA A 1089 1 13 HELIX 23 54 SER A 1090 THR A 1103 1 14 HELIX 24 55 ALA A 1111 ASP A 1118 1 8 HELIX 25 56 TYR A 1120 ALA A 1132 1 13 HELIX 26 57 GLU A 1133 LYS A 1143 1 11 HELIX 27 58 ILE A 1144 LYS A 1153 1 10 HELIX 28 59 GLY A 1157 LYS A 1163 1 7 HELIX 29 1 SER B 830 ASN B 838 1 9 HELIX 30 2 LEU B 846 ALA B 850 5 5 HELIX 31 3 HIS B 852 GLN B 858 1 7 HELIX 32 4 ASP B 859 ALA B 873 1 15 HELIX 33 5 THR B 874 ALA B 888 1 15 HELIX 34 6 ALA B 888 VAL B 894 1 7 HELIX 35 7 PHE B 897 PHE B 908 1 12 HELIX 36 8 SER B 910 ARG B 922 1 13 HELIX 37 9 HIS B 924 LEU B 930 1 7 HELIX 38 10 TYR B 933 ILE B 945 1 13 HELIX 39 11 PRO B 946 GLU B 956 1 11 HELIX 40 12 HIS B 960 LYS B 966 1 7 HELIX 41 13 ASN B 969 VAL B 981 1 13 HELIX 42 14 GLN B 982 SER B 985 5 4 HELIX 43 15 LEU B 986 LYS B 994 1 9 HELIX 44 16 GLN B 996 THR B 1002 1 7 HELIX 45 17 TYR B 1005 CYS B 1017 1 13 HELIX 46 18 LEU B 1018 GLN B 1031 1 14 HELIX 47 19 HIS B 1032 VAL B 1037 1 6 HELIX 48 20 TYR B 1041 GLY B 1053 1 13 HELIX 49 21 ARG B 1054 ARG B 1066 1 13 HELIX 50 22 ASN B 1068 GLN B 1074 1 7 HELIX 51 23 HIS B 1075 ALA B 1089 1 15 HELIX 52 24 SER B 1090 MET B 1104 1 15 HELIX 53 25 ALA B 1111 MET B 1116 1 6 HELIX 54 26 TYR B 1120 ALA B 1132 1 13 HELIX 55 27 GLU B 1133 ARG B 1145 1 13 HELIX 56 28 HIS B 1147 LYS B 1153 1 7 HELIX 57 29 TYR B 1154 TYR B 1156 5 3 HELIX 58 30 GLY B 1157 LYS B 1163 1 7 HELIX 59 31 LEU B 1164 TYR B 1168 5 5 SHEET 1 AA 2 ASN B1105 ASP B1106 0 SHEET 2 AA 2 HIS B1109 SER B1110 -1 O HIS B1109 N ASP B1106 SHEET 1 BA 2 ASN A1105 ASP A1106 0 SHEET 2 BA 2 HIS A1109 SER A1110 -1 O HIS A1109 N ASP A1106 CRYST1 35.796 59.340 344.724 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002901 0.00000