data_2YK6 # _entry.id 2YK6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YK6 pdb_00002yk6 10.2210/pdb2yk6/pdb PDBE EBI-48412 ? ? WWPDB D_1290048412 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2YK4 unspecified 'STRUCTURE OF NEISSERIA LOS-SPECIFIC SIALYLTRANSFERASE (NST).' PDB 2YK5 unspecified 'STRUCTURE OF NEISSERIA LOS-SPECIFIC SIALYLTRANSFERASE (NST), IN COMPLEX WITH CMP.' PDB 2YK7 unspecified 'STRUCTURE OF NEISSERIA LOS-SPECIFIC SIALYLTRANSFERASE (NST), IN COMPLEX WITH CMP-3F-NEU5AC.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YK6 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-05-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lin, L.Y.C.' 1 ? 'Rakic, B.' 2 ? 'Chiu, C.P.C.' 3 ? 'Lameignere, E.' 4 ? 'Wakarchuk, W.W.' 5 ? 'Withers, S.G.' 6 ? 'Strynadka, N.C.J.' 7 ? # _citation.id primary _citation.title 'Structure and Mechanism of the Lipooligosaccharide Sialyltransferase from Neisseria Meningitidis' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 37237 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21880735 _citation.pdbx_database_id_DOI 10.1074/JBC.M111.249920 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lin, L.Y.C.' 1 ? primary 'Rakic, B.' 2 ? primary 'Chiu, C.P.C.' 3 ? primary 'Lameignere, E.' 4 ? primary 'Wakarchuk, W.W.' 5 ? primary 'Withers, S.G.' 6 ? primary 'Strynadka, N.C.J.' 7 ? # _cell.entry_id 2YK6 _cell.length_a 86.099 _cell.length_b 123.510 _cell.length_c 41.652 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YK6 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE 37565.203 1 2.4.99.- ? 'DELTA29NST, RESIDUES 49-370' ? 2 non-polymer syn "CYTIDINE-5'-DIPHOSPHATE" 403.176 1 ? ? ? ? 3 non-polymer syn 'PENTAETHYLENE GLYCOL' 238.278 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;ALPHA 2\,3-ST, BETA-GALACTOSIDE ALPHA-2\,3-SIALYL TRANSFERASE, LIPOOLIGOSACCHARIDE SIALYLTRANSFERASE, LOS-SPECIFIC SIALYLTRANSFERASE ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDKAEWAYFFHLPYGLNKSFNFIPTMAELKVK AMLLPKVKRIYLASLEKVSIAAFLSTYPDAEIKTFDDGTINLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTRNAS DEHYTIFKGLKNIMDDGRRKMTYLPLFDASELKAGDETGGTVRILLGSPDKEMKEISEKAAKNFNIQYVAPHPRQTYGLS GVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALTMKDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFD DKLVPR ; _entity_poly.pdbx_seq_one_letter_code_can ;PVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDKAEWAYFFHLPYGLNKSFNFIPTMAELKVK AMLLPKVKRIYLASLEKVSIAAFLSTYPDAEIKTFDDGTINLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTRNAS DEHYTIFKGLKNIMDDGRRKMTYLPLFDASELKAGDETGGTVRILLGSPDKEMKEISEKAAKNFNIQYVAPHPRQTYGLS GVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALTMKDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFD DKLVPR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 VAL n 1 3 ASN n 1 4 LEU n 1 5 ILE n 1 6 PHE n 1 7 CYS n 1 8 TYR n 1 9 THR n 1 10 ILE n 1 11 LEU n 1 12 GLN n 1 13 MET n 1 14 LYS n 1 15 VAL n 1 16 ALA n 1 17 GLU n 1 18 ARG n 1 19 ILE n 1 20 MET n 1 21 ALA n 1 22 GLN n 1 23 HIS n 1 24 PRO n 1 25 GLY n 1 26 GLU n 1 27 ARG n 1 28 PHE n 1 29 TYR n 1 30 VAL n 1 31 VAL n 1 32 LEU n 1 33 MET n 1 34 SER n 1 35 GLU n 1 36 ASN n 1 37 ARG n 1 38 ASN n 1 39 GLU n 1 40 LYS n 1 41 TYR n 1 42 ASP n 1 43 TYR n 1 44 TYR n 1 45 PHE n 1 46 ASN n 1 47 GLN n 1 48 ILE n 1 49 LYS n 1 50 ASP n 1 51 LYS n 1 52 ALA n 1 53 GLU n 1 54 TRP n 1 55 ALA n 1 56 TYR n 1 57 PHE n 1 58 PHE n 1 59 HIS n 1 60 LEU n 1 61 PRO n 1 62 TYR n 1 63 GLY n 1 64 LEU n 1 65 ASN n 1 66 LYS n 1 67 SER n 1 68 PHE n 1 69 ASN n 1 70 PHE n 1 71 ILE n 1 72 PRO n 1 73 THR n 1 74 MET n 1 75 ALA n 1 76 GLU n 1 77 LEU n 1 78 LYS n 1 79 VAL n 1 80 LYS n 1 81 ALA n 1 82 MET n 1 83 LEU n 1 84 LEU n 1 85 PRO n 1 86 LYS n 1 87 VAL n 1 88 LYS n 1 89 ARG n 1 90 ILE n 1 91 TYR n 1 92 LEU n 1 93 ALA n 1 94 SER n 1 95 LEU n 1 96 GLU n 1 97 LYS n 1 98 VAL n 1 99 SER n 1 100 ILE n 1 101 ALA n 1 102 ALA n 1 103 PHE n 1 104 LEU n 1 105 SER n 1 106 THR n 1 107 TYR n 1 108 PRO n 1 109 ASP n 1 110 ALA n 1 111 GLU n 1 112 ILE n 1 113 LYS n 1 114 THR n 1 115 PHE n 1 116 ASP n 1 117 ASP n 1 118 GLY n 1 119 THR n 1 120 ILE n 1 121 ASN n 1 122 LEU n 1 123 ILE n 1 124 GLN n 1 125 SER n 1 126 SER n 1 127 SER n 1 128 TYR n 1 129 LEU n 1 130 GLY n 1 131 ASP n 1 132 GLU n 1 133 PHE n 1 134 SER n 1 135 VAL n 1 136 ASN n 1 137 GLY n 1 138 THR n 1 139 ILE n 1 140 LYS n 1 141 ARG n 1 142 ASN n 1 143 PHE n 1 144 ALA n 1 145 ARG n 1 146 MET n 1 147 MET n 1 148 ILE n 1 149 GLY n 1 150 ASP n 1 151 TRP n 1 152 SER n 1 153 ILE n 1 154 ALA n 1 155 LYS n 1 156 THR n 1 157 ARG n 1 158 ASN n 1 159 ALA n 1 160 SER n 1 161 ASP n 1 162 GLU n 1 163 HIS n 1 164 TYR n 1 165 THR n 1 166 ILE n 1 167 PHE n 1 168 LYS n 1 169 GLY n 1 170 LEU n 1 171 LYS n 1 172 ASN n 1 173 ILE n 1 174 MET n 1 175 ASP n 1 176 ASP n 1 177 GLY n 1 178 ARG n 1 179 ARG n 1 180 LYS n 1 181 MET n 1 182 THR n 1 183 TYR n 1 184 LEU n 1 185 PRO n 1 186 LEU n 1 187 PHE n 1 188 ASP n 1 189 ALA n 1 190 SER n 1 191 GLU n 1 192 LEU n 1 193 LYS n 1 194 ALA n 1 195 GLY n 1 196 ASP n 1 197 GLU n 1 198 THR n 1 199 GLY n 1 200 GLY n 1 201 THR n 1 202 VAL n 1 203 ARG n 1 204 ILE n 1 205 LEU n 1 206 LEU n 1 207 GLY n 1 208 SER n 1 209 PRO n 1 210 ASP n 1 211 LYS n 1 212 GLU n 1 213 MET n 1 214 LYS n 1 215 GLU n 1 216 ILE n 1 217 SER n 1 218 GLU n 1 219 LYS n 1 220 ALA n 1 221 ALA n 1 222 LYS n 1 223 ASN n 1 224 PHE n 1 225 ASN n 1 226 ILE n 1 227 GLN n 1 228 TYR n 1 229 VAL n 1 230 ALA n 1 231 PRO n 1 232 HIS n 1 233 PRO n 1 234 ARG n 1 235 GLN n 1 236 THR n 1 237 TYR n 1 238 GLY n 1 239 LEU n 1 240 SER n 1 241 GLY n 1 242 VAL n 1 243 THR n 1 244 THR n 1 245 LEU n 1 246 ASN n 1 247 SER n 1 248 PRO n 1 249 TYR n 1 250 VAL n 1 251 ILE n 1 252 GLU n 1 253 ASP n 1 254 TYR n 1 255 ILE n 1 256 LEU n 1 257 ARG n 1 258 GLU n 1 259 ILE n 1 260 LYS n 1 261 LYS n 1 262 ASN n 1 263 PRO n 1 264 HIS n 1 265 THR n 1 266 ARG n 1 267 TYR n 1 268 GLU n 1 269 ILE n 1 270 TYR n 1 271 THR n 1 272 PHE n 1 273 PHE n 1 274 SER n 1 275 GLY n 1 276 ALA n 1 277 ALA n 1 278 LEU n 1 279 THR n 1 280 MET n 1 281 LYS n 1 282 ASP n 1 283 PHE n 1 284 PRO n 1 285 ASN n 1 286 VAL n 1 287 HIS n 1 288 VAL n 1 289 TYR n 1 290 ALA n 1 291 LEU n 1 292 LYS n 1 293 PRO n 1 294 ALA n 1 295 SER n 1 296 LEU n 1 297 PRO n 1 298 GLU n 1 299 ASP n 1 300 TYR n 1 301 TRP n 1 302 LEU n 1 303 LYS n 1 304 PRO n 1 305 VAL n 1 306 TYR n 1 307 ALA n 1 308 LEU n 1 309 PHE n 1 310 THR n 1 311 GLN n 1 312 SER n 1 313 GLY n 1 314 ILE n 1 315 PRO n 1 316 ILE n 1 317 LEU n 1 318 THR n 1 319 PHE n 1 320 ASP n 1 321 ASP n 1 322 LYS n 1 323 LEU n 1 324 VAL n 1 325 PRO n 1 326 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain '126E / NRCC4010' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'NEISSERIA MENINGITIDIS SEROGROUP B' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 491 _entity_src_gen.pdbx_gene_src_variant 'L1 IMMUNOTYPE' _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET-41B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LST_NEIMB _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P72097 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YK6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 322 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P72097 _struct_ref_seq.db_align_beg 49 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 370 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 49 _struct_ref_seq.pdbx_auth_seq_align_end 370 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YK6 LEU A 323 ? UNP P72097 ? ? 'expression tag' 371 1 1 2YK6 VAL A 324 ? UNP P72097 ? ? 'expression tag' 372 2 1 2YK6 PRO A 325 ? UNP P72097 ? ? 'expression tag' 373 3 1 2YK6 ARG A 326 ? UNP P72097 ? ? 'expression tag' 374 4 1 2YK6 TRP A 54 ? UNP P72097 ARG 102 variant 102 5 1 2YK6 ALA A 81 ? UNP P72097 SER 129 variant 129 6 1 2YK6 ILE A 120 ? UNP P72097 GLY 168 variant 168 7 1 2YK6 ALA A 194 ? UNP P72097 THR 242 variant 242 8 1 2YK6 ASN A 225 ? UNP P72097 LYS 273 variant 273 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PE non-polymer . 'PENTAETHYLENE GLYCOL' PEG400 'C10 H22 O6' 238.278 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CDP non-polymer . "CYTIDINE-5'-DIPHOSPHATE" ? 'C9 H15 N3 O11 P2' 403.176 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YK6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.45 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;PROTEIN WAS CRYSTALLIZED BY VAPOR DIFFUSION METHODS USING DROPS OF PROTEIN MIXED WITH AN EQUAL VOLUME OF PRECIPITANT: 100 MM SODIUM ACETATE (PH 4.2 - 4.4) 1.7 M DI-AMMONIUM SULFATE. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'X-RAY MIRRORS OSMIC VARIMAXHR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YK6 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 70.71 _reflns.d_resolution_high 2.83 _reflns.number_obs 11162 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.121 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.8 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.83 _reflns_shell.d_res_low 2.88 _reflns_shell.percent_possible_all 97.8 _reflns_shell.Rmerge_I_obs 0.522 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YK6 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10631 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 70.71 _refine.ls_d_res_high 2.83 _refine.ls_percent_reflns_obs 99.55 _refine.ls_R_factor_obs 0.19294 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18985 _refine.ls_R_factor_R_free 0.25654 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 532 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.883 _refine.B_iso_mean 27.571 _refine.aniso_B[1][1] 0.53 _refine.aniso_B[2][2] -0.51 _refine.aniso_B[3][3] -0.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2YK5' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.376 _refine.overall_SU_ML 0.244 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 12.501 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2637 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 2764 _refine_hist.d_res_high 2.83 _refine_hist.d_res_low 70.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 2751 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.694 1.988 ? 3722 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.771 5.000 ? 324 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.883 23.852 ? 122 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.140 15.000 ? 476 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.437 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.112 0.200 ? 403 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 2045 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.756 1.500 ? 1626 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.456 2.000 ? 2638 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.953 3.000 ? 1125 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.337 4.500 ? 1084 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.827 _refine_ls_shell.d_res_low 2.900 _refine_ls_shell.number_reflns_R_work 746 _refine_ls_shell.R_factor_R_work 0.291 _refine_ls_shell.percent_reflns_obs 96.55 _refine_ls_shell.R_factor_R_free 0.323 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 2YK6 _struct.title 'Structure of Neisseria LOS-specific sialyltransferase (NST), in complex with CDP.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YK6 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, LIPOOLIGOSACCHARIDE SIALYLTRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 9 ? GLN A 22 ? THR A 57 GLN A 70 1 ? 14 HELX_P HELX_P2 2 ASN A 38 ? ASP A 50 ? ASN A 86 ASP A 98 1 ? 13 HELX_P HELX_P3 3 THR A 73 ? MET A 82 ? THR A 121 MET A 130 1 ? 10 HELX_P HELX_P4 4 LEU A 95 ? ILE A 100 ? LEU A 143 ILE A 148 1 ? 6 HELX_P HELX_P5 5 ILE A 100 ? THR A 106 ? ILE A 148 THR A 154 1 ? 7 HELX_P HELX_P6 6 GLY A 118 ? ILE A 123 ? GLY A 166 ILE A 171 5 ? 6 HELX_P HELX_P7 7 GLN A 124 ? GLY A 130 ? GLN A 172 GLY A 178 5 ? 7 HELX_P HELX_P8 8 GLY A 130 ? SER A 134 ? GLY A 178 SER A 182 5 ? 5 HELX_P HELX_P9 9 THR A 138 ? ARG A 157 ? THR A 186 ARG A 205 1 ? 20 HELX_P HELX_P10 10 ASP A 210 ? GLU A 212 ? ASP A 258 GLU A 260 5 ? 3 HELX_P HELX_P11 11 MET A 213 ? PHE A 224 ? MET A 261 PHE A 272 1 ? 12 HELX_P HELX_P12 12 VAL A 250 ? ASN A 262 ? VAL A 298 ASN A 310 1 ? 13 HELX_P HELX_P13 13 GLY A 275 ? LYS A 281 ? GLY A 323 LYS A 329 1 ? 7 HELX_P HELX_P14 14 PRO A 297 ? TRP A 301 ? PRO A 345 TRP A 349 5 ? 5 HELX_P HELX_P15 15 LEU A 302 ? SER A 312 ? LEU A 350 SER A 360 1 ? 11 HELX_P HELX_P16 16 ASP A 320 ? VAL A 324 ? ASP A 368 VAL A 372 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 4 ? AC ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AB 1 2 ? parallel AB 2 3 ? parallel AB 3 4 ? parallel AC 1 2 ? parallel AC 2 3 ? parallel AC 3 4 ? parallel AC 4 5 ? parallel AC 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ASN A 3 ? CYS A 7 ? ASN A 51 CYS A 55 AA 2 PHE A 28 ? SER A 34 ? PHE A 76 SER A 82 AA 3 TRP A 54 ? HIS A 59 ? TRP A 102 HIS A 107 AB 1 ARG A 89 ? ALA A 93 ? ARG A 137 ALA A 141 AB 2 GLU A 111 ? PHE A 115 ? GLU A 159 PHE A 163 AB 3 GLU A 162 ? THR A 165 ? GLU A 210 THR A 213 AB 4 LYS A 180 ? TYR A 183 ? LYS A 228 TYR A 231 AC 1 THR A 243 ? THR A 244 ? THR A 291 THR A 292 AC 2 TYR A 228 ? ALA A 230 ? TYR A 276 ALA A 278 AC 3 THR A 201 ? LEU A 206 ? THR A 249 LEU A 254 AC 4 ARG A 266 ? THR A 271 ? ARG A 314 THR A 319 AC 5 VAL A 286 ? PRO A 293 ? VAL A 334 PRO A 341 AC 6 ILE A 316 ? PHE A 319 ? ILE A 364 PHE A 367 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 5 ? N ILE A 53 O TYR A 29 ? O TYR A 77 AA 2 3 N VAL A 30 ? N VAL A 78 O TRP A 54 ? O TRP A 102 AB 1 2 N ILE A 90 ? N ILE A 138 O GLU A 111 ? O GLU A 159 AB 2 3 N THR A 114 ? N THR A 162 O GLU A 162 ? O GLU A 210 AB 3 4 N HIS A 163 ? N HIS A 211 O LYS A 180 ? O LYS A 228 AC 1 2 O THR A 243 ? O THR A 291 N VAL A 229 ? N VAL A 277 AC 2 3 N TYR A 228 ? N TYR A 276 O ARG A 203 ? O ARG A 251 AC 3 4 N VAL A 202 ? N VAL A 250 O ARG A 266 ? O ARG A 314 AC 4 5 N ILE A 269 ? N ILE A 317 O HIS A 287 ? O HIS A 335 AC 5 6 N LYS A 292 ? N LYS A 340 O LEU A 317 ? O LEU A 365 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CDP 1374 ? 18 'BINDING SITE FOR RESIDUE CDP A 1374' AC2 Software A 1PE 1375 ? 10 'BINDING SITE FOR RESIDUE 1PE A 1375' AC3 Software A SO4 1376 ? 5 'BINDING SITE FOR RESIDUE SO4 A 1376' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 LEU A 11 ? LEU A 59 . ? 2_665 ? 2 AC1 18 ASN A 69 ? ASN A 117 . ? 2_665 ? 3 AC1 18 PHE A 70 ? PHE A 118 . ? 2_665 ? 4 AC1 18 LEU A 206 ? LEU A 254 . ? 1_555 ? 5 AC1 18 GLY A 207 ? GLY A 255 . ? 1_555 ? 6 AC1 18 ALA A 230 ? ALA A 278 . ? 1_555 ? 7 AC1 18 PRO A 231 ? PRO A 279 . ? 1_555 ? 8 AC1 18 HIS A 232 ? HIS A 280 . ? 1_555 ? 9 AC1 18 PRO A 233 ? PRO A 281 . ? 1_555 ? 10 AC1 18 ARG A 234 ? ARG A 282 . ? 1_555 ? 11 AC1 18 VAL A 250 ? VAL A 298 . ? 1_555 ? 12 AC1 18 ILE A 251 ? ILE A 299 . ? 1_555 ? 13 AC1 18 GLU A 252 ? GLU A 300 . ? 1_555 ? 14 AC1 18 SER A 274 ? SER A 322 . ? 1_555 ? 15 AC1 18 GLY A 275 ? GLY A 323 . ? 1_555 ? 16 AC1 18 ALA A 276 ? ALA A 324 . ? 1_555 ? 17 AC1 18 HOH E . ? HOH A 2025 . ? 1_555 ? 18 AC1 18 HOH E . ? HOH A 2059 . ? 1_555 ? 19 AC2 10 MET A 33 ? MET A 81 . ? 1_555 ? 20 AC2 10 ASN A 65 ? ASN A 113 . ? 1_555 ? 21 AC2 10 SER A 67 ? SER A 115 . ? 1_555 ? 22 AC2 10 LEU A 95 ? LEU A 143 . ? 2_665 ? 23 AC2 10 GLU A 96 ? GLU A 144 . ? 2_665 ? 24 AC2 10 VAL A 98 ? VAL A 146 . ? 2_665 ? 25 AC2 10 SER A 99 ? SER A 147 . ? 2_665 ? 26 AC2 10 ALA A 102 ? ALA A 150 . ? 1_555 ? 27 AC2 10 THR A 106 ? THR A 154 . ? 1_555 ? 28 AC2 10 HOH E . ? HOH A 2010 . ? 1_555 ? 29 AC3 5 GLY A 130 ? GLY A 178 . ? 1_555 ? 30 AC3 5 ASP A 131 ? ASP A 179 . ? 1_555 ? 31 AC3 5 GLU A 132 ? GLU A 180 . ? 1_555 ? 32 AC3 5 SER A 240 ? SER A 288 . ? 1_556 ? 33 AC3 5 GLY A 241 ? GLY A 289 . ? 1_556 ? # _database_PDB_matrix.entry_id 2YK6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YK6 _atom_sites.fract_transf_matrix[1][1] 0.011615 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008097 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024008 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 49 49 PRO PRO A . n A 1 2 VAL 2 50 50 VAL VAL A . n A 1 3 ASN 3 51 51 ASN ASN A . n A 1 4 LEU 4 52 52 LEU LEU A . n A 1 5 ILE 5 53 53 ILE ILE A . n A 1 6 PHE 6 54 54 PHE PHE A . n A 1 7 CYS 7 55 55 CYS CYS A . n A 1 8 TYR 8 56 56 TYR TYR A . n A 1 9 THR 9 57 57 THR THR A . n A 1 10 ILE 10 58 58 ILE ILE A . n A 1 11 LEU 11 59 59 LEU LEU A . n A 1 12 GLN 12 60 60 GLN GLN A . n A 1 13 MET 13 61 61 MET MET A . n A 1 14 LYS 14 62 62 LYS LYS A . n A 1 15 VAL 15 63 63 VAL VAL A . n A 1 16 ALA 16 64 64 ALA ALA A . n A 1 17 GLU 17 65 65 GLU GLU A . n A 1 18 ARG 18 66 66 ARG ARG A . n A 1 19 ILE 19 67 67 ILE ILE A . n A 1 20 MET 20 68 68 MET MET A . n A 1 21 ALA 21 69 69 ALA ALA A . n A 1 22 GLN 22 70 70 GLN GLN A . n A 1 23 HIS 23 71 71 HIS HIS A . n A 1 24 PRO 24 72 72 PRO PRO A . n A 1 25 GLY 25 73 73 GLY GLY A . n A 1 26 GLU 26 74 74 GLU GLU A . n A 1 27 ARG 27 75 75 ARG ARG A . n A 1 28 PHE 28 76 76 PHE PHE A . n A 1 29 TYR 29 77 77 TYR TYR A . n A 1 30 VAL 30 78 78 VAL VAL A . n A 1 31 VAL 31 79 79 VAL VAL A . n A 1 32 LEU 32 80 80 LEU LEU A . n A 1 33 MET 33 81 81 MET MET A . n A 1 34 SER 34 82 82 SER SER A . n A 1 35 GLU 35 83 83 GLU GLU A . n A 1 36 ASN 36 84 84 ASN ASN A . n A 1 37 ARG 37 85 85 ARG ARG A . n A 1 38 ASN 38 86 86 ASN ASN A . n A 1 39 GLU 39 87 87 GLU GLU A . n A 1 40 LYS 40 88 88 LYS LYS A . n A 1 41 TYR 41 89 89 TYR TYR A . n A 1 42 ASP 42 90 90 ASP ASP A . n A 1 43 TYR 43 91 91 TYR TYR A . n A 1 44 TYR 44 92 92 TYR TYR A . n A 1 45 PHE 45 93 93 PHE PHE A . n A 1 46 ASN 46 94 94 ASN ASN A . n A 1 47 GLN 47 95 95 GLN GLN A . n A 1 48 ILE 48 96 96 ILE ILE A . n A 1 49 LYS 49 97 97 LYS LYS A . n A 1 50 ASP 50 98 98 ASP ASP A . n A 1 51 LYS 51 99 99 LYS LYS A . n A 1 52 ALA 52 100 100 ALA ALA A . n A 1 53 GLU 53 101 101 GLU GLU A . n A 1 54 TRP 54 102 102 TRP TRP A . n A 1 55 ALA 55 103 103 ALA ALA A . n A 1 56 TYR 56 104 104 TYR TYR A . n A 1 57 PHE 57 105 105 PHE PHE A . n A 1 58 PHE 58 106 106 PHE PHE A . n A 1 59 HIS 59 107 107 HIS HIS A . n A 1 60 LEU 60 108 108 LEU LEU A . n A 1 61 PRO 61 109 109 PRO PRO A . n A 1 62 TYR 62 110 110 TYR TYR A . n A 1 63 GLY 63 111 111 GLY GLY A . n A 1 64 LEU 64 112 112 LEU LEU A . n A 1 65 ASN 65 113 113 ASN ASN A . n A 1 66 LYS 66 114 114 LYS LYS A . n A 1 67 SER 67 115 115 SER SER A . n A 1 68 PHE 68 116 116 PHE PHE A . n A 1 69 ASN 69 117 117 ASN ASN A . n A 1 70 PHE 70 118 118 PHE PHE A . n A 1 71 ILE 71 119 119 ILE ILE A . n A 1 72 PRO 72 120 120 PRO PRO A . n A 1 73 THR 73 121 121 THR THR A . n A 1 74 MET 74 122 122 MET MET A . n A 1 75 ALA 75 123 123 ALA ALA A . n A 1 76 GLU 76 124 124 GLU GLU A . n A 1 77 LEU 77 125 125 LEU LEU A . n A 1 78 LYS 78 126 126 LYS LYS A . n A 1 79 VAL 79 127 127 VAL VAL A . n A 1 80 LYS 80 128 128 LYS LYS A . n A 1 81 ALA 81 129 129 ALA ALA A . n A 1 82 MET 82 130 130 MET MET A . n A 1 83 LEU 83 131 131 LEU LEU A . n A 1 84 LEU 84 132 132 LEU LEU A . n A 1 85 PRO 85 133 133 PRO PRO A . n A 1 86 LYS 86 134 134 LYS LYS A . n A 1 87 VAL 87 135 135 VAL VAL A . n A 1 88 LYS 88 136 136 LYS LYS A . n A 1 89 ARG 89 137 137 ARG ARG A . n A 1 90 ILE 90 138 138 ILE ILE A . n A 1 91 TYR 91 139 139 TYR TYR A . n A 1 92 LEU 92 140 140 LEU LEU A . n A 1 93 ALA 93 141 141 ALA ALA A . n A 1 94 SER 94 142 142 SER SER A . n A 1 95 LEU 95 143 143 LEU LEU A . n A 1 96 GLU 96 144 144 GLU GLU A . n A 1 97 LYS 97 145 145 LYS LYS A . n A 1 98 VAL 98 146 146 VAL VAL A . n A 1 99 SER 99 147 147 SER SER A . n A 1 100 ILE 100 148 148 ILE ILE A . n A 1 101 ALA 101 149 149 ALA ALA A . n A 1 102 ALA 102 150 150 ALA ALA A . n A 1 103 PHE 103 151 151 PHE PHE A . n A 1 104 LEU 104 152 152 LEU LEU A . n A 1 105 SER 105 153 153 SER SER A . n A 1 106 THR 106 154 154 THR THR A . n A 1 107 TYR 107 155 155 TYR TYR A . n A 1 108 PRO 108 156 156 PRO PRO A . n A 1 109 ASP 109 157 157 ASP ASP A . n A 1 110 ALA 110 158 158 ALA ALA A . n A 1 111 GLU 111 159 159 GLU GLU A . n A 1 112 ILE 112 160 160 ILE ILE A . n A 1 113 LYS 113 161 161 LYS LYS A . n A 1 114 THR 114 162 162 THR THR A . n A 1 115 PHE 115 163 163 PHE PHE A . n A 1 116 ASP 116 164 164 ASP ASP A . n A 1 117 ASP 117 165 165 ASP ASP A . n A 1 118 GLY 118 166 166 GLY GLY A . n A 1 119 THR 119 167 167 THR THR A . n A 1 120 ILE 120 168 168 ILE ILE A . n A 1 121 ASN 121 169 169 ASN ASN A . n A 1 122 LEU 122 170 170 LEU LEU A . n A 1 123 ILE 123 171 171 ILE ILE A . n A 1 124 GLN 124 172 172 GLN GLN A . n A 1 125 SER 125 173 173 SER SER A . n A 1 126 SER 126 174 174 SER SER A . n A 1 127 SER 127 175 175 SER SER A . n A 1 128 TYR 128 176 176 TYR TYR A . n A 1 129 LEU 129 177 177 LEU LEU A . n A 1 130 GLY 130 178 178 GLY GLY A . n A 1 131 ASP 131 179 179 ASP ASP A . n A 1 132 GLU 132 180 180 GLU GLU A . n A 1 133 PHE 133 181 181 PHE PHE A . n A 1 134 SER 134 182 182 SER SER A . n A 1 135 VAL 135 183 183 VAL VAL A . n A 1 136 ASN 136 184 184 ASN ASN A . n A 1 137 GLY 137 185 185 GLY GLY A . n A 1 138 THR 138 186 186 THR THR A . n A 1 139 ILE 139 187 187 ILE ILE A . n A 1 140 LYS 140 188 188 LYS LYS A . n A 1 141 ARG 141 189 189 ARG ARG A . n A 1 142 ASN 142 190 190 ASN ASN A . n A 1 143 PHE 143 191 191 PHE PHE A . n A 1 144 ALA 144 192 192 ALA ALA A . n A 1 145 ARG 145 193 193 ARG ARG A . n A 1 146 MET 146 194 194 MET MET A . n A 1 147 MET 147 195 195 MET MET A . n A 1 148 ILE 148 196 196 ILE ILE A . n A 1 149 GLY 149 197 197 GLY GLY A . n A 1 150 ASP 150 198 198 ASP ASP A . n A 1 151 TRP 151 199 199 TRP TRP A . n A 1 152 SER 152 200 200 SER SER A . n A 1 153 ILE 153 201 201 ILE ILE A . n A 1 154 ALA 154 202 202 ALA ALA A . n A 1 155 LYS 155 203 203 LYS LYS A . n A 1 156 THR 156 204 204 THR THR A . n A 1 157 ARG 157 205 205 ARG ARG A . n A 1 158 ASN 158 206 206 ASN ASN A . n A 1 159 ALA 159 207 207 ALA ALA A . n A 1 160 SER 160 208 208 SER SER A . n A 1 161 ASP 161 209 209 ASP ASP A . n A 1 162 GLU 162 210 210 GLU GLU A . n A 1 163 HIS 163 211 211 HIS HIS A . n A 1 164 TYR 164 212 212 TYR TYR A . n A 1 165 THR 165 213 213 THR THR A . n A 1 166 ILE 166 214 214 ILE ILE A . n A 1 167 PHE 167 215 215 PHE PHE A . n A 1 168 LYS 168 216 216 LYS LYS A . n A 1 169 GLY 169 217 217 GLY GLY A . n A 1 170 LEU 170 218 218 LEU LEU A . n A 1 171 LYS 171 219 219 LYS LYS A . n A 1 172 ASN 172 220 220 ASN ASN A . n A 1 173 ILE 173 221 221 ILE ILE A . n A 1 174 MET 174 222 222 MET MET A . n A 1 175 ASP 175 223 223 ASP ASP A . n A 1 176 ASP 176 224 224 ASP ASP A . n A 1 177 GLY 177 225 225 GLY GLY A . n A 1 178 ARG 178 226 226 ARG ARG A . n A 1 179 ARG 179 227 227 ARG ARG A . n A 1 180 LYS 180 228 228 LYS LYS A . n A 1 181 MET 181 229 229 MET MET A . n A 1 182 THR 182 230 230 THR THR A . n A 1 183 TYR 183 231 231 TYR TYR A . n A 1 184 LEU 184 232 232 LEU LEU A . n A 1 185 PRO 185 233 233 PRO PRO A . n A 1 186 LEU 186 234 234 LEU LEU A . n A 1 187 PHE 187 235 235 PHE PHE A . n A 1 188 ASP 188 236 236 ASP ASP A . n A 1 189 ALA 189 237 237 ALA ALA A . n A 1 190 SER 190 238 238 SER SER A . n A 1 191 GLU 191 239 239 GLU GLU A . n A 1 192 LEU 192 240 240 LEU LEU A . n A 1 193 LYS 193 241 241 LYS LYS A . n A 1 194 ALA 194 242 242 ALA ALA A . n A 1 195 GLY 195 243 243 GLY GLY A . n A 1 196 ASP 196 244 244 ASP ASP A . n A 1 197 GLU 197 245 245 GLU GLU A . n A 1 198 THR 198 246 246 THR THR A . n A 1 199 GLY 199 247 247 GLY GLY A . n A 1 200 GLY 200 248 248 GLY GLY A . n A 1 201 THR 201 249 249 THR THR A . n A 1 202 VAL 202 250 250 VAL VAL A . n A 1 203 ARG 203 251 251 ARG ARG A . n A 1 204 ILE 204 252 252 ILE ILE A . n A 1 205 LEU 205 253 253 LEU LEU A . n A 1 206 LEU 206 254 254 LEU LEU A . n A 1 207 GLY 207 255 255 GLY GLY A . n A 1 208 SER 208 256 256 SER SER A . n A 1 209 PRO 209 257 257 PRO PRO A . n A 1 210 ASP 210 258 258 ASP ASP A . n A 1 211 LYS 211 259 259 LYS LYS A . n A 1 212 GLU 212 260 260 GLU GLU A . n A 1 213 MET 213 261 261 MET MET A . n A 1 214 LYS 214 262 262 LYS LYS A . n A 1 215 GLU 215 263 263 GLU GLU A . n A 1 216 ILE 216 264 264 ILE ILE A . n A 1 217 SER 217 265 265 SER SER A . n A 1 218 GLU 218 266 266 GLU GLU A . n A 1 219 LYS 219 267 267 LYS LYS A . n A 1 220 ALA 220 268 268 ALA ALA A . n A 1 221 ALA 221 269 269 ALA ALA A . n A 1 222 LYS 222 270 270 LYS LYS A . n A 1 223 ASN 223 271 271 ASN ASN A . n A 1 224 PHE 224 272 272 PHE PHE A . n A 1 225 ASN 225 273 273 ASN ASN A . n A 1 226 ILE 226 274 274 ILE ILE A . n A 1 227 GLN 227 275 275 GLN GLN A . n A 1 228 TYR 228 276 276 TYR TYR A . n A 1 229 VAL 229 277 277 VAL VAL A . n A 1 230 ALA 230 278 278 ALA ALA A . n A 1 231 PRO 231 279 279 PRO PRO A . n A 1 232 HIS 232 280 280 HIS HIS A . n A 1 233 PRO 233 281 281 PRO PRO A . n A 1 234 ARG 234 282 282 ARG ARG A . n A 1 235 GLN 235 283 283 GLN GLN A . n A 1 236 THR 236 284 284 THR THR A . n A 1 237 TYR 237 285 285 TYR TYR A . n A 1 238 GLY 238 286 286 GLY GLY A . n A 1 239 LEU 239 287 287 LEU LEU A . n A 1 240 SER 240 288 288 SER SER A . n A 1 241 GLY 241 289 289 GLY GLY A . n A 1 242 VAL 242 290 290 VAL VAL A . n A 1 243 THR 243 291 291 THR THR A . n A 1 244 THR 244 292 292 THR THR A . n A 1 245 LEU 245 293 293 LEU LEU A . n A 1 246 ASN 246 294 294 ASN ASN A . n A 1 247 SER 247 295 295 SER SER A . n A 1 248 PRO 248 296 296 PRO PRO A . n A 1 249 TYR 249 297 297 TYR TYR A . n A 1 250 VAL 250 298 298 VAL VAL A . n A 1 251 ILE 251 299 299 ILE ILE A . n A 1 252 GLU 252 300 300 GLU GLU A . n A 1 253 ASP 253 301 301 ASP ASP A . n A 1 254 TYR 254 302 302 TYR TYR A . n A 1 255 ILE 255 303 303 ILE ILE A . n A 1 256 LEU 256 304 304 LEU LEU A . n A 1 257 ARG 257 305 305 ARG ARG A . n A 1 258 GLU 258 306 306 GLU GLU A . n A 1 259 ILE 259 307 307 ILE ILE A . n A 1 260 LYS 260 308 308 LYS LYS A . n A 1 261 LYS 261 309 309 LYS LYS A . n A 1 262 ASN 262 310 310 ASN ASN A . n A 1 263 PRO 263 311 311 PRO PRO A . n A 1 264 HIS 264 312 312 HIS HIS A . n A 1 265 THR 265 313 313 THR THR A . n A 1 266 ARG 266 314 314 ARG ARG A . n A 1 267 TYR 267 315 315 TYR TYR A . n A 1 268 GLU 268 316 316 GLU GLU A . n A 1 269 ILE 269 317 317 ILE ILE A . n A 1 270 TYR 270 318 318 TYR TYR A . n A 1 271 THR 271 319 319 THR THR A . n A 1 272 PHE 272 320 320 PHE PHE A . n A 1 273 PHE 273 321 321 PHE PHE A . n A 1 274 SER 274 322 322 SER SER A . n A 1 275 GLY 275 323 323 GLY GLY A . n A 1 276 ALA 276 324 324 ALA ALA A . n A 1 277 ALA 277 325 325 ALA ALA A . n A 1 278 LEU 278 326 326 LEU LEU A . n A 1 279 THR 279 327 327 THR THR A . n A 1 280 MET 280 328 328 MET MET A . n A 1 281 LYS 281 329 329 LYS LYS A . n A 1 282 ASP 282 330 330 ASP ASP A . n A 1 283 PHE 283 331 331 PHE PHE A . n A 1 284 PRO 284 332 332 PRO PRO A . n A 1 285 ASN 285 333 333 ASN ASN A . n A 1 286 VAL 286 334 334 VAL VAL A . n A 1 287 HIS 287 335 335 HIS HIS A . n A 1 288 VAL 288 336 336 VAL VAL A . n A 1 289 TYR 289 337 337 TYR TYR A . n A 1 290 ALA 290 338 338 ALA ALA A . n A 1 291 LEU 291 339 339 LEU LEU A . n A 1 292 LYS 292 340 340 LYS LYS A . n A 1 293 PRO 293 341 341 PRO PRO A . n A 1 294 ALA 294 342 342 ALA ALA A . n A 1 295 SER 295 343 343 SER SER A . n A 1 296 LEU 296 344 344 LEU LEU A . n A 1 297 PRO 297 345 345 PRO PRO A . n A 1 298 GLU 298 346 346 GLU GLU A . n A 1 299 ASP 299 347 347 ASP ASP A . n A 1 300 TYR 300 348 348 TYR TYR A . n A 1 301 TRP 301 349 349 TRP TRP A . n A 1 302 LEU 302 350 350 LEU LEU A . n A 1 303 LYS 303 351 351 LYS LYS A . n A 1 304 PRO 304 352 352 PRO PRO A . n A 1 305 VAL 305 353 353 VAL VAL A . n A 1 306 TYR 306 354 354 TYR TYR A . n A 1 307 ALA 307 355 355 ALA ALA A . n A 1 308 LEU 308 356 356 LEU LEU A . n A 1 309 PHE 309 357 357 PHE PHE A . n A 1 310 THR 310 358 358 THR THR A . n A 1 311 GLN 311 359 359 GLN GLN A . n A 1 312 SER 312 360 360 SER SER A . n A 1 313 GLY 313 361 361 GLY GLY A . n A 1 314 ILE 314 362 362 ILE ILE A . n A 1 315 PRO 315 363 363 PRO PRO A . n A 1 316 ILE 316 364 364 ILE ILE A . n A 1 317 LEU 317 365 365 LEU LEU A . n A 1 318 THR 318 366 366 THR THR A . n A 1 319 PHE 319 367 367 PHE PHE A . n A 1 320 ASP 320 368 368 ASP ASP A . n A 1 321 ASP 321 369 369 ASP ASP A . n A 1 322 LYS 322 370 370 LYS LYS A . n A 1 323 LEU 323 371 371 LEU LEU A . n A 1 324 VAL 324 372 372 VAL VAL A . n A 1 325 PRO 325 373 373 PRO PRO A . n A 1 326 ARG 326 374 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CDP 1 1374 1374 CDP CDP A . C 3 1PE 1 1375 1375 1PE 1PE A . D 4 SO4 1 1376 1376 SO4 SO4 A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . E 5 HOH 48 2048 2048 HOH HOH A . E 5 HOH 49 2049 2049 HOH HOH A . E 5 HOH 50 2050 2050 HOH HOH A . E 5 HOH 51 2051 2051 HOH HOH A . E 5 HOH 52 2052 2052 HOH HOH A . E 5 HOH 53 2053 2053 HOH HOH A . E 5 HOH 54 2054 2054 HOH HOH A . E 5 HOH 55 2055 2055 HOH HOH A . E 5 HOH 56 2056 2056 HOH HOH A . E 5 HOH 57 2057 2057 HOH HOH A . E 5 HOH 58 2058 2058 HOH HOH A . E 5 HOH 59 2059 2059 HOH HOH A . E 5 HOH 60 2060 2060 HOH HOH A . E 5 HOH 61 2061 2061 HOH HOH A . E 5 HOH 62 2062 2062 HOH HOH A . E 5 HOH 63 2063 2063 HOH HOH A . E 5 HOH 64 2064 2064 HOH HOH A . E 5 HOH 65 2065 2065 HOH HOH A . E 5 HOH 66 2066 2066 HOH HOH A . E 5 HOH 67 2067 2067 HOH HOH A . E 5 HOH 68 2068 2068 HOH HOH A . E 5 HOH 69 2069 2069 HOH HOH A . E 5 HOH 70 2070 2070 HOH HOH A . E 5 HOH 71 2071 2071 HOH HOH A . E 5 HOH 72 2072 2072 HOH HOH A . E 5 HOH 73 2073 2073 HOH HOH A . E 5 HOH 74 2074 2074 HOH HOH A . E 5 HOH 75 2075 2075 HOH HOH A . E 5 HOH 76 2076 2076 HOH HOH A . E 5 HOH 77 2077 2077 HOH HOH A . E 5 HOH 78 2078 2078 HOH HOH A . E 5 HOH 79 2079 2079 HOH HOH A . E 5 HOH 80 2080 2080 HOH HOH A . E 5 HOH 81 2081 2081 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12380 ? 1 MORE -119.3 ? 1 'SSA (A^2)' 28300 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 86.0990000000 0.0000000000 -1.0000000000 0.0000000000 123.5100000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-31 2 'Structure model' 1 1 2011-11-02 3 'Structure model' 1 2 2018-02-14 4 'Structure model' 1 3 2019-09-04 5 'Structure model' 1 4 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' Other 9 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 4 'Structure model' exptl_crystal_grow 3 4 'Structure model' reflns 4 4 'Structure model' reflns_shell 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' pdbx_database_status 9 5 'Structure model' pdbx_initial_refinement_model 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_wavelength_list' 2 3 'Structure model' '_diffrn_source.source' 3 3 'Structure model' '_diffrn_source.type' 4 4 'Structure model' '_exptl_crystal_grow.method' 5 4 'Structure model' '_reflns.pdbx_Rmerge_I_obs' 6 4 'Structure model' '_reflns_shell.Rmerge_I_obs' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' 9 5 'Structure model' '_pdbx_database_status.status_code_sf' 10 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 11 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 12 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.5.0110 ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SCALEPACK 'data scaling' . ? 3 ? ? ? ? MOLREP phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 2YK6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;E40D, R102W, G168I, AND K273N ARE NATURAL VARIANTS IN THE STRAIN N. MENINGITIDIS SEROTYPE B 126E / NRCC4010. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 2062 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2063 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2004 ? ? 1_555 O A HOH 2057 ? ? 3_655 1.68 2 1 O A HOH 2003 ? ? 1_555 O A HOH 2080 ? ? 3_655 2.14 3 1 NH1 A ARG 66 ? ? 1_555 O A PRO 233 ? ? 2_665 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 55 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 55 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.688 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.124 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 56 ? ? -140.64 15.96 2 1 LEU A 132 ? ? -36.87 115.82 3 1 ALA A 207 ? ? -31.48 119.02 4 1 THR A 246 ? ? -114.96 -147.45 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2007 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.54 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ARG _pdbx_unobs_or_zero_occ_residues.auth_seq_id 374 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ARG _pdbx_unobs_or_zero_occ_residues.label_seq_id 326 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1PE OH2 O N N 1 1PE C12 C N N 2 1PE C22 C N N 3 1PE OH3 O N N 4 1PE C13 C N N 5 1PE C23 C N N 6 1PE OH4 O N N 7 1PE C14 C N N 8 1PE C24 C N N 9 1PE OH5 O N N 10 1PE C15 C N N 11 1PE C25 C N N 12 1PE OH6 O N N 13 1PE C16 C N N 14 1PE C26 C N N 15 1PE OH7 O N N 16 1PE HO2 H N N 17 1PE H121 H N N 18 1PE H122 H N N 19 1PE H221 H N N 20 1PE H222 H N N 21 1PE H131 H N N 22 1PE H132 H N N 23 1PE H231 H N N 24 1PE H232 H N N 25 1PE H141 H N N 26 1PE H142 H N N 27 1PE H241 H N N 28 1PE H242 H N N 29 1PE H151 H N N 30 1PE H152 H N N 31 1PE H251 H N N 32 1PE H252 H N N 33 1PE H161 H N N 34 1PE H162 H N N 35 1PE H261 H N N 36 1PE H262 H N N 37 1PE HO7 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CDP O3B O N N 112 CDP PB P N N 113 CDP O1B O N N 114 CDP O2B O N N 115 CDP O3A O N N 116 CDP PA P N R 117 CDP O1A O N N 118 CDP O2A O N N 119 CDP "O5'" O N N 120 CDP "C5'" C N N 121 CDP "C4'" C N R 122 CDP "O4'" O N N 123 CDP "C3'" C N S 124 CDP "O3'" O N N 125 CDP "C2'" C N R 126 CDP "O2'" O N N 127 CDP "C1'" C N R 128 CDP N1 N N N 129 CDP C2 C N N 130 CDP O2 O N N 131 CDP N3 N N N 132 CDP C4 C N N 133 CDP N4 N N N 134 CDP C5 C N N 135 CDP C6 C N N 136 CDP "H5'1" H N N 137 CDP "H5'2" H N N 138 CDP "H4'" H N N 139 CDP "H3'" H N N 140 CDP HA H N N 141 CDP "H2'" H N N 142 CDP HB H N N 143 CDP "H1'" H N N 144 CDP H4N1 H N N 145 CDP H4N2 H N N 146 CDP H5 H N N 147 CDP H6 H N N 148 CDP HO1 H N N 149 CDP HO2 H N N 150 CDP HO3 H N N 151 CYS N N N N 152 CYS CA C N R 153 CYS C C N N 154 CYS O O N N 155 CYS CB C N N 156 CYS SG S N N 157 CYS OXT O N N 158 CYS H H N N 159 CYS H2 H N N 160 CYS HA H N N 161 CYS HB2 H N N 162 CYS HB3 H N N 163 CYS HG H N N 164 CYS HXT H N N 165 GLN N N N N 166 GLN CA C N S 167 GLN C C N N 168 GLN O O N N 169 GLN CB C N N 170 GLN CG C N N 171 GLN CD C N N 172 GLN OE1 O N N 173 GLN NE2 N N N 174 GLN OXT O N N 175 GLN H H N N 176 GLN H2 H N N 177 GLN HA H N N 178 GLN HB2 H N N 179 GLN HB3 H N N 180 GLN HG2 H N N 181 GLN HG3 H N N 182 GLN HE21 H N N 183 GLN HE22 H N N 184 GLN HXT H N N 185 GLU N N N N 186 GLU CA C N S 187 GLU C C N N 188 GLU O O N N 189 GLU CB C N N 190 GLU CG C N N 191 GLU CD C N N 192 GLU OE1 O N N 193 GLU OE2 O N N 194 GLU OXT O N N 195 GLU H H N N 196 GLU H2 H N N 197 GLU HA H N N 198 GLU HB2 H N N 199 GLU HB3 H N N 200 GLU HG2 H N N 201 GLU HG3 H N N 202 GLU HE2 H N N 203 GLU HXT H N N 204 GLY N N N N 205 GLY CA C N N 206 GLY C C N N 207 GLY O O N N 208 GLY OXT O N N 209 GLY H H N N 210 GLY H2 H N N 211 GLY HA2 H N N 212 GLY HA3 H N N 213 GLY HXT H N N 214 HIS N N N N 215 HIS CA C N S 216 HIS C C N N 217 HIS O O N N 218 HIS CB C N N 219 HIS CG C Y N 220 HIS ND1 N Y N 221 HIS CD2 C Y N 222 HIS CE1 C Y N 223 HIS NE2 N Y N 224 HIS OXT O N N 225 HIS H H N N 226 HIS H2 H N N 227 HIS HA H N N 228 HIS HB2 H N N 229 HIS HB3 H N N 230 HIS HD1 H N N 231 HIS HD2 H N N 232 HIS HE1 H N N 233 HIS HE2 H N N 234 HIS HXT H N N 235 HOH O O N N 236 HOH H1 H N N 237 HOH H2 H N N 238 ILE N N N N 239 ILE CA C N S 240 ILE C C N N 241 ILE O O N N 242 ILE CB C N S 243 ILE CG1 C N N 244 ILE CG2 C N N 245 ILE CD1 C N N 246 ILE OXT O N N 247 ILE H H N N 248 ILE H2 H N N 249 ILE HA H N N 250 ILE HB H N N 251 ILE HG12 H N N 252 ILE HG13 H N N 253 ILE HG21 H N N 254 ILE HG22 H N N 255 ILE HG23 H N N 256 ILE HD11 H N N 257 ILE HD12 H N N 258 ILE HD13 H N N 259 ILE HXT H N N 260 LEU N N N N 261 LEU CA C N S 262 LEU C C N N 263 LEU O O N N 264 LEU CB C N N 265 LEU CG C N N 266 LEU CD1 C N N 267 LEU CD2 C N N 268 LEU OXT O N N 269 LEU H H N N 270 LEU H2 H N N 271 LEU HA H N N 272 LEU HB2 H N N 273 LEU HB3 H N N 274 LEU HG H N N 275 LEU HD11 H N N 276 LEU HD12 H N N 277 LEU HD13 H N N 278 LEU HD21 H N N 279 LEU HD22 H N N 280 LEU HD23 H N N 281 LEU HXT H N N 282 LYS N N N N 283 LYS CA C N S 284 LYS C C N N 285 LYS O O N N 286 LYS CB C N N 287 LYS CG C N N 288 LYS CD C N N 289 LYS CE C N N 290 LYS NZ N N N 291 LYS OXT O N N 292 LYS H H N N 293 LYS H2 H N N 294 LYS HA H N N 295 LYS HB2 H N N 296 LYS HB3 H N N 297 LYS HG2 H N N 298 LYS HG3 H N N 299 LYS HD2 H N N 300 LYS HD3 H N N 301 LYS HE2 H N N 302 LYS HE3 H N N 303 LYS HZ1 H N N 304 LYS HZ2 H N N 305 LYS HZ3 H N N 306 LYS HXT H N N 307 MET N N N N 308 MET CA C N S 309 MET C C N N 310 MET O O N N 311 MET CB C N N 312 MET CG C N N 313 MET SD S N N 314 MET CE C N N 315 MET OXT O N N 316 MET H H N N 317 MET H2 H N N 318 MET HA H N N 319 MET HB2 H N N 320 MET HB3 H N N 321 MET HG2 H N N 322 MET HG3 H N N 323 MET HE1 H N N 324 MET HE2 H N N 325 MET HE3 H N N 326 MET HXT H N N 327 PHE N N N N 328 PHE CA C N S 329 PHE C C N N 330 PHE O O N N 331 PHE CB C N N 332 PHE CG C Y N 333 PHE CD1 C Y N 334 PHE CD2 C Y N 335 PHE CE1 C Y N 336 PHE CE2 C Y N 337 PHE CZ C Y N 338 PHE OXT O N N 339 PHE H H N N 340 PHE H2 H N N 341 PHE HA H N N 342 PHE HB2 H N N 343 PHE HB3 H N N 344 PHE HD1 H N N 345 PHE HD2 H N N 346 PHE HE1 H N N 347 PHE HE2 H N N 348 PHE HZ H N N 349 PHE HXT H N N 350 PRO N N N N 351 PRO CA C N S 352 PRO C C N N 353 PRO O O N N 354 PRO CB C N N 355 PRO CG C N N 356 PRO CD C N N 357 PRO OXT O N N 358 PRO H H N N 359 PRO HA H N N 360 PRO HB2 H N N 361 PRO HB3 H N N 362 PRO HG2 H N N 363 PRO HG3 H N N 364 PRO HD2 H N N 365 PRO HD3 H N N 366 PRO HXT H N N 367 SER N N N N 368 SER CA C N S 369 SER C C N N 370 SER O O N N 371 SER CB C N N 372 SER OG O N N 373 SER OXT O N N 374 SER H H N N 375 SER H2 H N N 376 SER HA H N N 377 SER HB2 H N N 378 SER HB3 H N N 379 SER HG H N N 380 SER HXT H N N 381 SO4 S S N N 382 SO4 O1 O N N 383 SO4 O2 O N N 384 SO4 O3 O N N 385 SO4 O4 O N N 386 THR N N N N 387 THR CA C N S 388 THR C C N N 389 THR O O N N 390 THR CB C N R 391 THR OG1 O N N 392 THR CG2 C N N 393 THR OXT O N N 394 THR H H N N 395 THR H2 H N N 396 THR HA H N N 397 THR HB H N N 398 THR HG1 H N N 399 THR HG21 H N N 400 THR HG22 H N N 401 THR HG23 H N N 402 THR HXT H N N 403 TRP N N N N 404 TRP CA C N S 405 TRP C C N N 406 TRP O O N N 407 TRP CB C N N 408 TRP CG C Y N 409 TRP CD1 C Y N 410 TRP CD2 C Y N 411 TRP NE1 N Y N 412 TRP CE2 C Y N 413 TRP CE3 C Y N 414 TRP CZ2 C Y N 415 TRP CZ3 C Y N 416 TRP CH2 C Y N 417 TRP OXT O N N 418 TRP H H N N 419 TRP H2 H N N 420 TRP HA H N N 421 TRP HB2 H N N 422 TRP HB3 H N N 423 TRP HD1 H N N 424 TRP HE1 H N N 425 TRP HE3 H N N 426 TRP HZ2 H N N 427 TRP HZ3 H N N 428 TRP HH2 H N N 429 TRP HXT H N N 430 TYR N N N N 431 TYR CA C N S 432 TYR C C N N 433 TYR O O N N 434 TYR CB C N N 435 TYR CG C Y N 436 TYR CD1 C Y N 437 TYR CD2 C Y N 438 TYR CE1 C Y N 439 TYR CE2 C Y N 440 TYR CZ C Y N 441 TYR OH O N N 442 TYR OXT O N N 443 TYR H H N N 444 TYR H2 H N N 445 TYR HA H N N 446 TYR HB2 H N N 447 TYR HB3 H N N 448 TYR HD1 H N N 449 TYR HD2 H N N 450 TYR HE1 H N N 451 TYR HE2 H N N 452 TYR HH H N N 453 TYR HXT H N N 454 VAL N N N N 455 VAL CA C N S 456 VAL C C N N 457 VAL O O N N 458 VAL CB C N N 459 VAL CG1 C N N 460 VAL CG2 C N N 461 VAL OXT O N N 462 VAL H H N N 463 VAL H2 H N N 464 VAL HA H N N 465 VAL HB H N N 466 VAL HG11 H N N 467 VAL HG12 H N N 468 VAL HG13 H N N 469 VAL HG21 H N N 470 VAL HG22 H N N 471 VAL HG23 H N N 472 VAL HXT H N N 473 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1PE OH2 C12 sing N N 1 1PE OH2 HO2 sing N N 2 1PE C12 C22 sing N N 3 1PE C12 H121 sing N N 4 1PE C12 H122 sing N N 5 1PE C22 OH3 sing N N 6 1PE C22 H221 sing N N 7 1PE C22 H222 sing N N 8 1PE OH3 C23 sing N N 9 1PE C13 C23 sing N N 10 1PE C13 OH4 sing N N 11 1PE C13 H131 sing N N 12 1PE C13 H132 sing N N 13 1PE C23 H231 sing N N 14 1PE C23 H232 sing N N 15 1PE OH4 C24 sing N N 16 1PE C14 C24 sing N N 17 1PE C14 OH5 sing N N 18 1PE C14 H141 sing N N 19 1PE C14 H142 sing N N 20 1PE C24 H241 sing N N 21 1PE C24 H242 sing N N 22 1PE OH5 C25 sing N N 23 1PE C15 C25 sing N N 24 1PE C15 OH6 sing N N 25 1PE C15 H151 sing N N 26 1PE C15 H152 sing N N 27 1PE C25 H251 sing N N 28 1PE C25 H252 sing N N 29 1PE OH6 C26 sing N N 30 1PE C16 C26 sing N N 31 1PE C16 OH7 sing N N 32 1PE C16 H161 sing N N 33 1PE C16 H162 sing N N 34 1PE C26 H261 sing N N 35 1PE C26 H262 sing N N 36 1PE OH7 HO7 sing N N 37 ALA N CA sing N N 38 ALA N H sing N N 39 ALA N H2 sing N N 40 ALA CA C sing N N 41 ALA CA CB sing N N 42 ALA CA HA sing N N 43 ALA C O doub N N 44 ALA C OXT sing N N 45 ALA CB HB1 sing N N 46 ALA CB HB2 sing N N 47 ALA CB HB3 sing N N 48 ALA OXT HXT sing N N 49 ARG N CA sing N N 50 ARG N H sing N N 51 ARG N H2 sing N N 52 ARG CA C sing N N 53 ARG CA CB sing N N 54 ARG CA HA sing N N 55 ARG C O doub N N 56 ARG C OXT sing N N 57 ARG CB CG sing N N 58 ARG CB HB2 sing N N 59 ARG CB HB3 sing N N 60 ARG CG CD sing N N 61 ARG CG HG2 sing N N 62 ARG CG HG3 sing N N 63 ARG CD NE sing N N 64 ARG CD HD2 sing N N 65 ARG CD HD3 sing N N 66 ARG NE CZ sing N N 67 ARG NE HE sing N N 68 ARG CZ NH1 sing N N 69 ARG CZ NH2 doub N N 70 ARG NH1 HH11 sing N N 71 ARG NH1 HH12 sing N N 72 ARG NH2 HH21 sing N N 73 ARG NH2 HH22 sing N N 74 ARG OXT HXT sing N N 75 ASN N CA sing N N 76 ASN N H sing N N 77 ASN N H2 sing N N 78 ASN CA C sing N N 79 ASN CA CB sing N N 80 ASN CA HA sing N N 81 ASN C O doub N N 82 ASN C OXT sing N N 83 ASN CB CG sing N N 84 ASN CB HB2 sing N N 85 ASN CB HB3 sing N N 86 ASN CG OD1 doub N N 87 ASN CG ND2 sing N N 88 ASN ND2 HD21 sing N N 89 ASN ND2 HD22 sing N N 90 ASN OXT HXT sing N N 91 ASP N CA sing N N 92 ASP N H sing N N 93 ASP N H2 sing N N 94 ASP CA C sing N N 95 ASP CA CB sing N N 96 ASP CA HA sing N N 97 ASP C O doub N N 98 ASP C OXT sing N N 99 ASP CB CG sing N N 100 ASP CB HB2 sing N N 101 ASP CB HB3 sing N N 102 ASP CG OD1 doub N N 103 ASP CG OD2 sing N N 104 ASP OD2 HD2 sing N N 105 ASP OXT HXT sing N N 106 CDP O3B PB sing N N 107 CDP PB O1B doub N N 108 CDP PB O2B sing N N 109 CDP PB O3A sing N N 110 CDP O3A PA sing N N 111 CDP PA O1A doub N N 112 CDP PA O2A sing N N 113 CDP PA "O5'" sing N N 114 CDP "O5'" "C5'" sing N N 115 CDP "C5'" "C4'" sing N N 116 CDP "C5'" "H5'1" sing N N 117 CDP "C5'" "H5'2" sing N N 118 CDP "C4'" "O4'" sing N N 119 CDP "C4'" "C3'" sing N N 120 CDP "C4'" "H4'" sing N N 121 CDP "O4'" "C1'" sing N N 122 CDP "C3'" "O3'" sing N N 123 CDP "C3'" "C2'" sing N N 124 CDP "C3'" "H3'" sing N N 125 CDP "O3'" HA sing N N 126 CDP "C2'" "O2'" sing N N 127 CDP "C2'" "C1'" sing N N 128 CDP "C2'" "H2'" sing N N 129 CDP "O2'" HB sing N N 130 CDP "C1'" N1 sing N N 131 CDP "C1'" "H1'" sing N N 132 CDP N1 C2 sing N N 133 CDP N1 C6 sing N N 134 CDP C2 O2 doub N N 135 CDP C2 N3 sing N N 136 CDP N3 C4 doub N N 137 CDP C4 N4 sing N N 138 CDP C4 C5 sing N N 139 CDP N4 H4N1 sing N N 140 CDP N4 H4N2 sing N N 141 CDP C5 C6 doub N N 142 CDP C5 H5 sing N N 143 CDP C6 H6 sing N N 144 CDP HO1 O2A sing N N 145 CDP HO2 O2B sing N N 146 CDP HO3 O3B sing N N 147 CYS N CA sing N N 148 CYS N H sing N N 149 CYS N H2 sing N N 150 CYS CA C sing N N 151 CYS CA CB sing N N 152 CYS CA HA sing N N 153 CYS C O doub N N 154 CYS C OXT sing N N 155 CYS CB SG sing N N 156 CYS CB HB2 sing N N 157 CYS CB HB3 sing N N 158 CYS SG HG sing N N 159 CYS OXT HXT sing N N 160 GLN N CA sing N N 161 GLN N H sing N N 162 GLN N H2 sing N N 163 GLN CA C sing N N 164 GLN CA CB sing N N 165 GLN CA HA sing N N 166 GLN C O doub N N 167 GLN C OXT sing N N 168 GLN CB CG sing N N 169 GLN CB HB2 sing N N 170 GLN CB HB3 sing N N 171 GLN CG CD sing N N 172 GLN CG HG2 sing N N 173 GLN CG HG3 sing N N 174 GLN CD OE1 doub N N 175 GLN CD NE2 sing N N 176 GLN NE2 HE21 sing N N 177 GLN NE2 HE22 sing N N 178 GLN OXT HXT sing N N 179 GLU N CA sing N N 180 GLU N H sing N N 181 GLU N H2 sing N N 182 GLU CA C sing N N 183 GLU CA CB sing N N 184 GLU CA HA sing N N 185 GLU C O doub N N 186 GLU C OXT sing N N 187 GLU CB CG sing N N 188 GLU CB HB2 sing N N 189 GLU CB HB3 sing N N 190 GLU CG CD sing N N 191 GLU CG HG2 sing N N 192 GLU CG HG3 sing N N 193 GLU CD OE1 doub N N 194 GLU CD OE2 sing N N 195 GLU OE2 HE2 sing N N 196 GLU OXT HXT sing N N 197 GLY N CA sing N N 198 GLY N H sing N N 199 GLY N H2 sing N N 200 GLY CA C sing N N 201 GLY CA HA2 sing N N 202 GLY CA HA3 sing N N 203 GLY C O doub N N 204 GLY C OXT sing N N 205 GLY OXT HXT sing N N 206 HIS N CA sing N N 207 HIS N H sing N N 208 HIS N H2 sing N N 209 HIS CA C sing N N 210 HIS CA CB sing N N 211 HIS CA HA sing N N 212 HIS C O doub N N 213 HIS C OXT sing N N 214 HIS CB CG sing N N 215 HIS CB HB2 sing N N 216 HIS CB HB3 sing N N 217 HIS CG ND1 sing Y N 218 HIS CG CD2 doub Y N 219 HIS ND1 CE1 doub Y N 220 HIS ND1 HD1 sing N N 221 HIS CD2 NE2 sing Y N 222 HIS CD2 HD2 sing N N 223 HIS CE1 NE2 sing Y N 224 HIS CE1 HE1 sing N N 225 HIS NE2 HE2 sing N N 226 HIS OXT HXT sing N N 227 HOH O H1 sing N N 228 HOH O H2 sing N N 229 ILE N CA sing N N 230 ILE N H sing N N 231 ILE N H2 sing N N 232 ILE CA C sing N N 233 ILE CA CB sing N N 234 ILE CA HA sing N N 235 ILE C O doub N N 236 ILE C OXT sing N N 237 ILE CB CG1 sing N N 238 ILE CB CG2 sing N N 239 ILE CB HB sing N N 240 ILE CG1 CD1 sing N N 241 ILE CG1 HG12 sing N N 242 ILE CG1 HG13 sing N N 243 ILE CG2 HG21 sing N N 244 ILE CG2 HG22 sing N N 245 ILE CG2 HG23 sing N N 246 ILE CD1 HD11 sing N N 247 ILE CD1 HD12 sing N N 248 ILE CD1 HD13 sing N N 249 ILE OXT HXT sing N N 250 LEU N CA sing N N 251 LEU N H sing N N 252 LEU N H2 sing N N 253 LEU CA C sing N N 254 LEU CA CB sing N N 255 LEU CA HA sing N N 256 LEU C O doub N N 257 LEU C OXT sing N N 258 LEU CB CG sing N N 259 LEU CB HB2 sing N N 260 LEU CB HB3 sing N N 261 LEU CG CD1 sing N N 262 LEU CG CD2 sing N N 263 LEU CG HG sing N N 264 LEU CD1 HD11 sing N N 265 LEU CD1 HD12 sing N N 266 LEU CD1 HD13 sing N N 267 LEU CD2 HD21 sing N N 268 LEU CD2 HD22 sing N N 269 LEU CD2 HD23 sing N N 270 LEU OXT HXT sing N N 271 LYS N CA sing N N 272 LYS N H sing N N 273 LYS N H2 sing N N 274 LYS CA C sing N N 275 LYS CA CB sing N N 276 LYS CA HA sing N N 277 LYS C O doub N N 278 LYS C OXT sing N N 279 LYS CB CG sing N N 280 LYS CB HB2 sing N N 281 LYS CB HB3 sing N N 282 LYS CG CD sing N N 283 LYS CG HG2 sing N N 284 LYS CG HG3 sing N N 285 LYS CD CE sing N N 286 LYS CD HD2 sing N N 287 LYS CD HD3 sing N N 288 LYS CE NZ sing N N 289 LYS CE HE2 sing N N 290 LYS CE HE3 sing N N 291 LYS NZ HZ1 sing N N 292 LYS NZ HZ2 sing N N 293 LYS NZ HZ3 sing N N 294 LYS OXT HXT sing N N 295 MET N CA sing N N 296 MET N H sing N N 297 MET N H2 sing N N 298 MET CA C sing N N 299 MET CA CB sing N N 300 MET CA HA sing N N 301 MET C O doub N N 302 MET C OXT sing N N 303 MET CB CG sing N N 304 MET CB HB2 sing N N 305 MET CB HB3 sing N N 306 MET CG SD sing N N 307 MET CG HG2 sing N N 308 MET CG HG3 sing N N 309 MET SD CE sing N N 310 MET CE HE1 sing N N 311 MET CE HE2 sing N N 312 MET CE HE3 sing N N 313 MET OXT HXT sing N N 314 PHE N CA sing N N 315 PHE N H sing N N 316 PHE N H2 sing N N 317 PHE CA C sing N N 318 PHE CA CB sing N N 319 PHE CA HA sing N N 320 PHE C O doub N N 321 PHE C OXT sing N N 322 PHE CB CG sing N N 323 PHE CB HB2 sing N N 324 PHE CB HB3 sing N N 325 PHE CG CD1 doub Y N 326 PHE CG CD2 sing Y N 327 PHE CD1 CE1 sing Y N 328 PHE CD1 HD1 sing N N 329 PHE CD2 CE2 doub Y N 330 PHE CD2 HD2 sing N N 331 PHE CE1 CZ doub Y N 332 PHE CE1 HE1 sing N N 333 PHE CE2 CZ sing Y N 334 PHE CE2 HE2 sing N N 335 PHE CZ HZ sing N N 336 PHE OXT HXT sing N N 337 PRO N CA sing N N 338 PRO N CD sing N N 339 PRO N H sing N N 340 PRO CA C sing N N 341 PRO CA CB sing N N 342 PRO CA HA sing N N 343 PRO C O doub N N 344 PRO C OXT sing N N 345 PRO CB CG sing N N 346 PRO CB HB2 sing N N 347 PRO CB HB3 sing N N 348 PRO CG CD sing N N 349 PRO CG HG2 sing N N 350 PRO CG HG3 sing N N 351 PRO CD HD2 sing N N 352 PRO CD HD3 sing N N 353 PRO OXT HXT sing N N 354 SER N CA sing N N 355 SER N H sing N N 356 SER N H2 sing N N 357 SER CA C sing N N 358 SER CA CB sing N N 359 SER CA HA sing N N 360 SER C O doub N N 361 SER C OXT sing N N 362 SER CB OG sing N N 363 SER CB HB2 sing N N 364 SER CB HB3 sing N N 365 SER OG HG sing N N 366 SER OXT HXT sing N N 367 SO4 S O1 doub N N 368 SO4 S O2 doub N N 369 SO4 S O3 sing N N 370 SO4 S O4 sing N N 371 THR N CA sing N N 372 THR N H sing N N 373 THR N H2 sing N N 374 THR CA C sing N N 375 THR CA CB sing N N 376 THR CA HA sing N N 377 THR C O doub N N 378 THR C OXT sing N N 379 THR CB OG1 sing N N 380 THR CB CG2 sing N N 381 THR CB HB sing N N 382 THR OG1 HG1 sing N N 383 THR CG2 HG21 sing N N 384 THR CG2 HG22 sing N N 385 THR CG2 HG23 sing N N 386 THR OXT HXT sing N N 387 TRP N CA sing N N 388 TRP N H sing N N 389 TRP N H2 sing N N 390 TRP CA C sing N N 391 TRP CA CB sing N N 392 TRP CA HA sing N N 393 TRP C O doub N N 394 TRP C OXT sing N N 395 TRP CB CG sing N N 396 TRP CB HB2 sing N N 397 TRP CB HB3 sing N N 398 TRP CG CD1 doub Y N 399 TRP CG CD2 sing Y N 400 TRP CD1 NE1 sing Y N 401 TRP CD1 HD1 sing N N 402 TRP CD2 CE2 doub Y N 403 TRP CD2 CE3 sing Y N 404 TRP NE1 CE2 sing Y N 405 TRP NE1 HE1 sing N N 406 TRP CE2 CZ2 sing Y N 407 TRP CE3 CZ3 doub Y N 408 TRP CE3 HE3 sing N N 409 TRP CZ2 CH2 doub Y N 410 TRP CZ2 HZ2 sing N N 411 TRP CZ3 CH2 sing Y N 412 TRP CZ3 HZ3 sing N N 413 TRP CH2 HH2 sing N N 414 TRP OXT HXT sing N N 415 TYR N CA sing N N 416 TYR N H sing N N 417 TYR N H2 sing N N 418 TYR CA C sing N N 419 TYR CA CB sing N N 420 TYR CA HA sing N N 421 TYR C O doub N N 422 TYR C OXT sing N N 423 TYR CB CG sing N N 424 TYR CB HB2 sing N N 425 TYR CB HB3 sing N N 426 TYR CG CD1 doub Y N 427 TYR CG CD2 sing Y N 428 TYR CD1 CE1 sing Y N 429 TYR CD1 HD1 sing N N 430 TYR CD2 CE2 doub Y N 431 TYR CD2 HD2 sing N N 432 TYR CE1 CZ doub Y N 433 TYR CE1 HE1 sing N N 434 TYR CE2 CZ sing Y N 435 TYR CE2 HE2 sing N N 436 TYR CZ OH sing N N 437 TYR OH HH sing N N 438 TYR OXT HXT sing N N 439 VAL N CA sing N N 440 VAL N H sing N N 441 VAL N H2 sing N N 442 VAL CA C sing N N 443 VAL CA CB sing N N 444 VAL CA HA sing N N 445 VAL C O doub N N 446 VAL C OXT sing N N 447 VAL CB CG1 sing N N 448 VAL CB CG2 sing N N 449 VAL CB HB sing N N 450 VAL CG1 HG11 sing N N 451 VAL CG1 HG12 sing N N 452 VAL CG1 HG13 sing N N 453 VAL CG2 HG21 sing N N 454 VAL CG2 HG22 sing N N 455 VAL CG2 HG23 sing N N 456 VAL OXT HXT sing N N 457 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "CYTIDINE-5'-DIPHOSPHATE" CDP 3 'PENTAETHYLENE GLYCOL' 1PE 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2YK5 _pdbx_initial_refinement_model.details 'PDB ENTRY 2YK5' #