HEADER IMMUNE SYSTEM 27-MAY-11 2YKL TITLE STRUCTURE OF HUMAN ANTI-NICOTINE FAB FRAGMENT IN COMPLEX WITH TITLE 2 NICOTINE-11-YL-METHYL-(4-ETHYLAMINO-4-OXO)-BUTANOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB FRAGMENT, HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB FRAGMENT, LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: B-CELL; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: EPSTEIN BARR VIRUS BASED EPISOMAL SOURCE 11 EXPRESSION VECTOR; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 CELL: B-CELL; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 21 EXPRESSION_SYSTEM_VECTOR: EPSTEIN BARR VIRUS BASED EPISOMAL SOURCE 22 EXPRESSION VECTOR KEYWDS IMMUNE SYSTEM, MONOCLONAL ANTIBODIES, ANTI-SMOKING VACCINE EXPDTA X-RAY DIFFRACTION AUTHOR K.TARS,S.KOTELOVICA,G.LIPOWSKY,M.BAUER,R.BEERLI,M.BACHMANN,P.MAURER REVDAT 5 20-DEC-23 2YKL 1 REMARK REVDAT 4 08-MAY-19 2YKL 1 REMARK REVDAT 3 03-APR-19 2YKL 1 SOURCE REVDAT 2 18-JAN-12 2YKL 1 JRNL REMARK DBREF HELIX REVDAT 2 2 1 SHEET SSBOND CISPEP SITE REVDAT 2 3 1 ATOM ANISOU TER CONECT REVDAT 2 4 1 MASTER REVDAT 1 16-NOV-11 2YKL 0 JRNL AUTH K.TARS,S.KOTELOVICA,G.LIPOWSKY,M.BAUER,R.BEERLI,M.BACHMANN, JRNL AUTH 2 P.MAURER JRNL TITL DIFFERENT BINDING MODES OF FREE AND CARRIER-PROTEIN-COUPLED JRNL TITL 2 NICOTINE IN A HUMAN MONOCLONAL ANTIBODY. JRNL REF J.MOL.BIOL. V. 415 118 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22079050 JRNL DOI 10.1016/J.JMB.2011.10.042 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1124 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1571 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2832 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.261 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.240 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2928 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4006 ; 1.212 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 6.488 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;35.905 ;24.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 423 ;13.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;24.185 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2184 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1892 ; 0.542 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3056 ; 0.999 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1036 ; 1.429 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 950 ; 2.223 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 5 L 106A REMARK 3 ORIGIN FOR THE GROUP (A): -22.2250 -11.5420 -1.4790 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.1555 REMARK 3 T33: 0.0570 T12: 0.0120 REMARK 3 T13: 0.0564 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.6909 L22: 3.5442 REMARK 3 L33: 0.6239 L12: 1.0998 REMARK 3 L13: 0.1750 L23: 0.3712 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: -0.0417 S13: 0.0054 REMARK 3 S21: -0.0156 S22: -0.0415 S23: -0.2123 REMARK 3 S31: 0.0207 S32: -0.0212 S33: 0.0153 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 107 L 208 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5940 -14.0180 -36.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.3069 REMARK 3 T33: 0.0406 T12: -0.1455 REMARK 3 T13: 0.0282 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.2510 L22: 4.2541 REMARK 3 L33: 3.5128 L12: -0.0336 REMARK 3 L13: 0.8772 L23: -0.4750 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.1080 S13: -0.0883 REMARK 3 S21: -0.3328 S22: 0.2549 S23: -0.2153 REMARK 3 S31: 0.1303 S32: -0.2460 S33: -0.2232 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 5 H 112 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0350 8.8900 -7.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.1410 REMARK 3 T33: 0.0694 T12: 0.0047 REMARK 3 T13: 0.0523 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.5936 L22: 1.1720 REMARK 3 L33: 2.5212 L12: 0.3839 REMARK 3 L13: -0.0036 L23: -0.2736 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0005 S13: 0.1082 REMARK 3 S21: -0.0339 S22: 0.0616 S23: 0.0950 REMARK 3 S31: -0.1060 S32: -0.0300 S33: -0.0307 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 113 H 208 REMARK 3 ORIGIN FOR THE GROUP (A): -37.4440 2.3830 -28.8140 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.3220 REMARK 3 T33: 0.0873 T12: -0.0098 REMARK 3 T13: 0.0152 T23: 0.0886 REMARK 3 L TENSOR REMARK 3 L11: 3.3932 L22: 3.6629 REMARK 3 L33: 3.6160 L12: 1.3598 REMARK 3 L13: -1.1457 L23: -1.2471 REMARK 3 S TENSOR REMARK 3 S11: -0.1015 S12: 0.2574 S13: 0.0711 REMARK 3 S21: -0.1188 S22: 0.4232 S23: 0.4663 REMARK 3 S31: 0.1442 S32: -0.8764 S33: -0.3217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1290048465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22342 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2YK1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP, 0.1 M SODIUM CACODYLATE REMARK 280 PH 6.5, 0.2 M MGCL2, 31% PEG MME 2000, 10 MG/ML PROTEIN, 20MM REMARK 280 NICOTINE-11-YL-METHYL-(4-ETHYLAMINO-4-OXO)-BUTANOATE., VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.12000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.12000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H2036 LIES ON A SPECIAL POSITION. REMARK 375 HOH L2043 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 MET H 2 REMARK 465 GLN H 3 REMARK 465 ALA H 125 REMARK 465 PRO H 126 REMARK 465 CYS H 127 REMARK 465 SER H 128 REMARK 465 ARG H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLU H 133 REMARK 465 SER H 134 REMARK 465 THR H 135 REMARK 465 ALA H 136 REMARK 465 ALA H 137 REMARK 465 SER H 156 REMARK 465 GLY H 157 REMARK 465 ALA H 158 REMARK 465 THR H 183 REMARK 465 VAL H 184 REMARK 465 PRO H 185 REMARK 465 SER H 186 REMARK 465 SER H 187 REMARK 465 ASN H 188 REMARK 465 PHE H 189 REMARK 465 GLY H 190 REMARK 465 THR H 191 REMARK 465 GLN H 192 REMARK 465 THR H 193 REMARK 465 TYR H 194 REMARK 465 GLN L 2 REMARK 465 SER L 3 REMARK 465 GLU L 123 REMARK 465 GLU L 124 REMARK 465 LEU L 125 REMARK 465 GLN L 126 REMARK 465 ALA L 127 REMARK 465 ASN L 128 REMARK 465 LYS L 129 REMARK 465 VAL L 155 REMARK 465 LYS L 156 REMARK 465 ALA L 157 REMARK 465 THR L 209 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 75 CG CD CE NZ REMARK 470 GLU L 4 CG CD OE1 OE2 REMARK 470 GLU L 183 CG CD OE1 OE2 REMARK 470 LYS L 186 CG CD CE NZ REMARK 470 ARG L 189 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 66 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG H 66 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -11.52 76.88 REMARK 500 LEU H 99 -84.87 -92.06 REMARK 500 LEU H 100 -115.73 -96.41 REMARK 500 GLN L 17 -156.75 -103.39 REMARK 500 ASN L 27B -92.59 -110.04 REMARK 500 ASN L 51 -46.33 73.67 REMARK 500 ASP L 151 -106.74 55.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 NICOTINE-11-YL-METHYL-(4-ETHYLAMINO-4-OXO)-BUTANOATE (NLD): REMARK 600 LINKER PART IS DISORDERED BEYOND C18 ATOM AND NOT INCLUDED REMARK 600 IN THE MODEL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NLD H 1213 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLD H 1213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YK1 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN ANTI-NICOTINE FAB FRAGMENT IN COMPLEX WITH REMARK 900 NICOTINE DBREF 2YKL H 1 208 PDB 2YKL 2YKL 1 208 DBREF 2YKL L 2 212 PDB 2YKL 2YKL 2 212 SEQRES 1 H 212 GLN MET GLN LEU LEU GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 212 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 212 GLY SER ILE TRP GLY TRP ILE ARG GLN PRO PRO GLY LYS SEQRES 4 H 212 GLY LEU GLU TRP ILE GLY SER ILE TYR SER SER GLY SER SEQRES 5 H 212 THR TYR TYR ASN PRO SER LEU LYS SER ARG VAL THR THR SEQRES 6 H 212 SER VAL ASP THR SER LYS ASN GLN PHE SER LEU ARG LEU SEQRES 7 H 212 SER SER VAL THR ALA ALA ASP THR ALA VAL TYR TYR CYS SEQRES 8 H 212 VAL ALA TRP PHE GLY ASP LEU LEU SER LEU LYS GLY VAL SEQRES 9 H 212 GLU LEU TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 H 212 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 212 CYS SER ARG SER THR SER GLU SER THR ALA ALA LEU GLY SEQRES 12 H 212 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 212 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 212 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 212 SER SER VAL VAL THR VAL PRO SER SER ASN PHE GLY THR SEQRES 16 H 212 GLN THR TYR THR CYS ASN VAL ASP HIS LYS PRO SER ASN SEQRES 17 H 212 THR LYS VAL ASP SEQRES 1 L 216 GLN SER GLU LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 L 216 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 216 SER ASN ILE GLY SER ASN TYR VAL TYR TRP TYR GLN GLN SEQRES 4 L 216 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR ARG ASN SEQRES 5 L 216 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 216 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 L 216 LEU ARG SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 L 216 TRP ASP ASP SER LEU SER ALA TRP VAL PHE GLY GLY GLY SEQRES 9 L 216 THR GLN LEU ASP ILE LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER HET NLD H1213 19 HETNAM NLD NICOTINE-11-YL-METHYL-(4-ETHYLAMINO-4-OXO)-BUTANOATE FORMUL 3 NLD C17 H25 N3 O3 FORMUL 4 HOH *152(H2 O) HELIX 1 1 THR H 73 LYS H 75 5 3 HELIX 2 2 THR H 83 THR H 87 5 5 HELIX 3 3 LYS H 201 ASN H 204 5 4 HELIX 4 4 ARG L 79 GLU L 83 5 5 HELIX 5 5 THR L 181 SER L 187 1 7 SHEET 1 HA 4 LEU H 5 SER H 7 0 SHEET 2 HA 4 LEU H 18 THR H 23 -1 O THR H 21 N SER H 7 SHEET 3 HA 4 GLN H 77 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 HA 4 VAL H 67 ASP H 72 -1 O THR H 68 N ARG H 81 SHEET 1 HB 4 LEU H 11 VAL H 12 0 SHEET 2 HB 4 THR H 107 VAL H 111 -1 O THR H 110 N VAL H 12 SHEET 3 HB 4 ALA H 88 GLY H 97 -1 O ALA H 88 N VAL H 109 SHEET 4 HB 4 VAL H 100E TRP H 103 -1 O VAL H 100E N PHE H 96 SHEET 1 HC 6 LEU H 11 VAL H 12 0 SHEET 2 HC 6 THR H 107 VAL H 111 -1 O THR H 110 N VAL H 12 SHEET 3 HC 6 ALA H 88 GLY H 97 -1 O ALA H 88 N VAL H 109 SHEET 4 HC 6 ILE H 29 GLN H 39 -1 O ILE H 29 N TRP H 95 SHEET 5 HC 6 GLU H 46 TYR H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 HC 6 THR H 57 TYR H 59 -1 O TYR H 58 N SER H 50 SHEET 1 HD 2 VAL H 100E TRP H 103 0 SHEET 2 HD 2 ALA H 88 GLY H 97 -1 O ALA H 94 N LEU H 102 SHEET 1 HE 4 SER H 120 PRO H 123 0 SHEET 2 HE 4 GLY H 139 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 HE 4 TYR H 176 VAL H 181 -1 O TYR H 176 N TYR H 145 SHEET 4 HE 4 VAL H 169 LEU H 170 1 O VAL H 169 N SER H 177 SHEET 1 HF 4 SER H 120 PRO H 123 0 SHEET 2 HF 4 GLY H 139 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 HF 4 TYR H 176 VAL H 181 -1 O TYR H 176 N TYR H 145 SHEET 4 HF 4 HIS H 164 THR H 165 -1 O HIS H 164 N VAL H 181 SHEET 1 HG 2 VAL H 169 LEU H 170 0 SHEET 2 HG 2 TYR H 176 VAL H 181 1 O SER H 177 N VAL H 169 SHEET 1 HH 3 THR H 151 TRP H 154 0 SHEET 2 HH 3 CYS H 196 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 HH 3 THR H 205 VAL H 207 -1 O THR H 205 N HIS H 200 SHEET 1 LA 4 SER L 10 GLY L 13 0 SHEET 2 LA 4 THR L 102 ILE L 106 1 O GLN L 103 N ALA L 11 SHEET 3 LA 4 ALA L 84 ASP L 92 -1 O ALA L 84 N LEU L 104 SHEET 4 LA 4 ALA L 95B PHE L 98 1 O ALA L 95B N ASP L 92 SHEET 1 LB 5 SER L 10 GLY L 13 0 SHEET 2 LB 5 THR L 102 ILE L 106 1 O GLN L 103 N ALA L 11 SHEET 3 LB 5 ALA L 84 ASP L 92 -1 O ALA L 84 N LEU L 104 SHEET 4 LB 5 TYR L 34 GLN L 38 -1 O TYR L 34 N ALA L 89 SHEET 5 LB 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 LC 2 ALA L 95B PHE L 98 0 SHEET 2 LC 2 ALA L 84 ASP L 92 1 O ALA L 90 N VAL L 97 SHEET 1 LD 3 VAL L 19 SER L 24 0 SHEET 2 LD 3 SER L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 LD 3 PHE L 62 SER L 67 -1 O SER L 63 N ALA L 74 SHEET 1 LE 4 SER L 114 PHE L 118 0 SHEET 2 LE 4 THR L 131 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 LE 4 TYR L 172 SER L 179 -1 O TYR L 172 N PHE L 139 SHEET 4 LE 4 SER L 165 LYS L 166 1 O SER L 165 N ALA L 173 SHEET 1 LF 4 SER L 114 PHE L 118 0 SHEET 2 LF 4 THR L 131 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 LF 4 TYR L 172 SER L 179 -1 O TYR L 172 N PHE L 139 SHEET 4 LF 4 VAL L 159 THR L 161 -1 O GLU L 160 N TYR L 177 SHEET 1 LG 2 SER L 165 LYS L 166 0 SHEET 2 LG 2 TYR L 172 SER L 179 1 O ALA L 173 N SER L 165 SHEET 1 LH 3 THR L 145 ALA L 150 0 SHEET 2 LH 3 TYR L 191 HIS L 197 -1 O SER L 192 N LYS L 149 SHEET 3 LH 3 SER L 200 VAL L 206 -1 O SER L 200 N HIS L 197 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.02 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.03 CISPEP 1 PHE H 146 PRO H 147 0 -8.24 CISPEP 2 GLU H 148 PRO H 149 0 4.79 CISPEP 3 TYR L 140 PRO L 141 0 5.76 SITE 1 AC1 10 ILE H 29 TRP H 30 GLY H 31 SER H 50 SITE 2 AC1 10 VAL H 93 TRP H 95 GLU H 101 TYR L 34 SITE 3 AC1 10 TYR L 36 TRP L 96 CRYST1 74.240 78.840 73.690 90.00 116.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013470 0.000000 0.006599 0.00000 SCALE2 0.000000 0.012684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015111 0.00000