HEADER RNA BINDING PROTEIN 28-MAY-11 2YKP TITLE STRUCTURE OF THE HUMAN LINE-1 ORF1P TRIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: LINE-1 ORF1P; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 104-326; COMPND 5 SYNONYM: ORF1 CODES FOR A 40 KDA PRODUCT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS RNA-BINDING PROTEIN, GENOME EVOLUTION, NUCLEIC ACID CHAPERONE, RNP, KEYWDS 2 COILED-COIL, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.KHAZINA,O.WEICHENRIEDER REVDAT 3 20-DEC-23 2YKP 1 REMARK REVDAT 2 14-SEP-11 2YKP 1 JRNL REVDAT 1 10-AUG-11 2YKP 0 JRNL AUTH E.KHAZINA,V.TRUFFAULT,R.BUETTNER,S.SCHMIDT,M.COLES, JRNL AUTH 2 O.WEICHENRIEDER JRNL TITL TRIMERIC STRUCTURE AND FLEXIBILITY OF THE L1ORF1P PROTEIN IN JRNL TITL 2 HUMAN L1 RETROTRANSPOSITION JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1006 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21822284 JRNL DOI 10.1038/NSMB.2097 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 13698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.5324 - 5.3002 0.94 2605 148 0.2183 0.2794 REMARK 3 2 5.3002 - 4.2072 0.98 2622 129 0.1935 0.2434 REMARK 3 3 4.2072 - 3.6755 0.99 2611 126 0.2196 0.2669 REMARK 3 4 3.6755 - 3.3395 0.99 2596 134 0.2498 0.2817 REMARK 3 5 3.3395 - 3.1001 1.00 2579 148 0.2927 0.3232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.19040 REMARK 3 B22 (A**2) : 0.49400 REMARK 3 B33 (A**2) : -8.68440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5032 REMARK 3 ANGLE : 0.484 6739 REMARK 3 CHIRALITY : 0.031 748 REMARK 3 PLANARITY : 0.002 873 REMARK 3 DIHEDRAL : 9.135 2039 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESSEQ 110:156)) OR (CHAIN B AND REMARK 3 (RESSEQ 107:156)) OR (CHAIN C AND (RESSEQ 109:156)) REMARK 3 ORIGIN FOR THE GROUP (A): 61.4321 85.4890 20.1489 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.2504 REMARK 3 T33: 0.1943 T12: 0.0217 REMARK 3 T13: -0.0851 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.4037 L22: 6.2793 REMARK 3 L33: 1.5539 L12: -2.6514 REMARK 3 L13: 0.2794 L23: 1.0051 REMARK 3 S TENSOR REMARK 3 S11: -0.1239 S12: -0.0001 S13: -0.0883 REMARK 3 S21: 0.0397 S22: 0.1534 S23: -0.3469 REMARK 3 S31: 0.2774 S32: 0.0946 S33: -0.0222 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 157:189 OR RESSEQ 195:204 OR REMARK 3 RESSEQ 211:252) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1961 123.2998 8.2767 REMARK 3 T TENSOR REMARK 3 T11: 0.6989 T22: 0.3352 REMARK 3 T33: 0.4839 T12: 0.0765 REMARK 3 T13: -0.0952 T23: 0.1172 REMARK 3 L TENSOR REMARK 3 L11: 1.9324 L22: 4.4827 REMARK 3 L33: 4.7943 L12: -0.7689 REMARK 3 L13: 1.1105 L23: -1.6446 REMARK 3 S TENSOR REMARK 3 S11: 0.1820 S12: -0.1494 S13: 0.3293 REMARK 3 S21: 0.4970 S22: 0.0614 S23: 0.6686 REMARK 3 S31: -1.3114 S32: -0.1782 S33: 0.0551 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 157:186 OR RESSEQ 195:203 OR REMARK 3 RESSEQ 213:252) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1457 110.1538 34.2370 REMARK 3 T TENSOR REMARK 3 T11: 0.4775 T22: 0.8239 REMARK 3 T33: 0.7468 T12: 0.2771 REMARK 3 T13: 0.1091 T23: 0.0744 REMARK 3 L TENSOR REMARK 3 L11: 2.4829 L22: 2.1775 REMARK 3 L33: 2.4052 L12: -0.9044 REMARK 3 L13: -1.1618 L23: -0.6354 REMARK 3 S TENSOR REMARK 3 S11: -0.7632 S12: -0.8078 S13: -0.3118 REMARK 3 S21: 0.5155 S22: 0.5969 S23: 0.2484 REMARK 3 S31: -0.4522 S32: -0.6506 S33: -0.0354 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 157:165 OR RESSEQ 169:187 OR REMARK 3 RESSEQ 195:203 OR RESSEQ 212:252) REMARK 3 ORIGIN FOR THE GROUP (A): 57.1092 125.8213 36.1221 REMARK 3 T TENSOR REMARK 3 T11: 0.5311 T22: 0.5072 REMARK 3 T33: 0.7766 T12: 0.0915 REMARK 3 T13: -0.1867 T23: -0.2456 REMARK 3 L TENSOR REMARK 3 L11: 3.0259 L22: 2.1590 REMARK 3 L33: 1.6757 L12: 0.0956 REMARK 3 L13: 0.9721 L23: -0.3484 REMARK 3 S TENSOR REMARK 3 S11: -0.1493 S12: -0.9024 S13: 0.6046 REMARK 3 S21: -0.1051 S22: 0.0091 S23: 0.2417 REMARK 3 S31: 0.3354 S32: -0.3140 S33: -0.0091 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 253:265) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6701 101.6391 6.9166 REMARK 3 T TENSOR REMARK 3 T11: 0.4892 T22: 0.4847 REMARK 3 T33: 0.7083 T12: 0.0219 REMARK 3 T13: 0.0502 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 0.4778 L22: 4.2555 REMARK 3 L33: 3.1210 L12: 0.9726 REMARK 3 L13: -1.1314 L23: -3.3016 REMARK 3 S TENSOR REMARK 3 S11: -0.4480 S12: -0.0421 S13: 0.0573 REMARK 3 S21: -1.5167 S22: 0.5202 S23: -1.0710 REMARK 3 S31: 0.9242 S32: 0.8661 S33: -0.0382 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 253:265) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5449 96.4739 38.8185 REMARK 3 T TENSOR REMARK 3 T11: 0.5679 T22: 0.7522 REMARK 3 T33: 0.3694 T12: 0.0452 REMARK 3 T13: 0.1253 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 3.9382 L22: 3.3021 REMARK 3 L33: 0.7672 L12: -1.2748 REMARK 3 L13: 0.7047 L23: -1.3116 REMARK 3 S TENSOR REMARK 3 S11: -0.4404 S12: 0.2537 S13: -1.5374 REMARK 3 S21: -1.0534 S22: -0.0517 S23: 0.7238 REMARK 3 S31: 0.9264 S32: -1.9622 S33: -0.3436 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 253:265) REMARK 3 ORIGIN FOR THE GROUP (A): 68.7239 111.1719 25.3343 REMARK 3 T TENSOR REMARK 3 T11: 0.2760 T22: 0.4342 REMARK 3 T33: 0.3398 T12: -0.0169 REMARK 3 T13: -0.0727 T23: -0.0538 REMARK 3 L TENSOR REMARK 3 L11: 0.4886 L22: 3.0238 REMARK 3 L33: 0.3835 L12: -0.7681 REMARK 3 L13: -0.1932 L23: -0.4393 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: 0.0565 S13: -1.0054 REMARK 3 S21: 0.5481 S22: -0.0749 S23: 0.0599 REMARK 3 S31: -0.7764 S32: 0.3163 S33: 0.0367 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 266:323) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4890 93.9094 3.0759 REMARK 3 T TENSOR REMARK 3 T11: 0.9258 T22: 0.7121 REMARK 3 T33: 0.4989 T12: -0.3387 REMARK 3 T13: -0.1616 T23: 0.1526 REMARK 3 L TENSOR REMARK 3 L11: 2.5705 L22: 1.8553 REMARK 3 L33: 1.6999 L12: 0.6751 REMARK 3 L13: 0.7853 L23: -1.2277 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.3019 S13: -0.5329 REMARK 3 S21: -1.0405 S22: 0.3625 S23: 0.9110 REMARK 3 S31: 1.3927 S32: -0.5005 S33: 0.0428 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 266:323) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5974 97.5572 53.4883 REMARK 3 T TENSOR REMARK 3 T11: 0.3644 T22: 0.4026 REMARK 3 T33: 0.3688 T12: 0.0913 REMARK 3 T13: 0.0937 T23: 0.0888 REMARK 3 L TENSOR REMARK 3 L11: 3.2855 L22: 1.4730 REMARK 3 L33: 3.4430 L12: 0.1337 REMARK 3 L13: 1.0178 L23: -0.9561 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: -0.6785 S13: -0.2261 REMARK 3 S21: 0.1935 S22: -0.2749 S23: -0.3374 REMARK 3 S31: 0.0109 S32: -0.3720 S33: 0.0032 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 266:323) REMARK 3 ORIGIN FOR THE GROUP (A): 78.5997 113.6684 13.7182 REMARK 3 T TENSOR REMARK 3 T11: 0.5825 T22: 0.7077 REMARK 3 T33: 0.5622 T12: -0.0352 REMARK 3 T13: -0.0160 T23: 0.1873 REMARK 3 L TENSOR REMARK 3 L11: 1.1914 L22: 1.1826 REMARK 3 L33: 2.6708 L12: 0.0925 REMARK 3 L13: -0.3555 L23: 0.0654 REMARK 3 S TENSOR REMARK 3 S11: 0.1800 S12: -0.2859 S13: 0.0586 REMARK 3 S21: -0.5045 S22: -0.3142 S23: -0.5030 REMARK 3 S31: -0.4579 S32: 1.0568 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIDE-CHAINS OF THE FOLLOWING RESIDUES REMARK 3 WERE TRUNCATED AT CB ATOMS. CHAIN A, RESIDUE 110. CHAIN B, REMARK 3 RESIDUES 108, 110. CHAIN C, RESIDUE 110. THE FOLLOWING RESIDUES REMARK 3 ARE DISORDERED. CHAIN A, RESIDUES 104 TO 109, 190 TO 194, 205 TO REMARK 3 210, 324 TO 326. CHAIN B, RESIDUES 104 TO 106, 187 TO 194, 204 REMARK 3 TO 212, 324 TO 332. CHAIN C, RESIDUES 104 TO 108, 166 TO 168, REMARK 3 188 TO 194, 204 TO 211, 324 TO 332. REMARK 4 REMARK 4 2YKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1290048469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00745 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13700 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 61.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2YKO AND 2W7A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM K-CITRATE, 20 % PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.96000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.96000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 104 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 105 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 121 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 125 TO ILE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 128 TO ILE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 104 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 105 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, MET 121 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, MET 125 TO ILE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, MET 128 TO ILE REMARK 400 ENGINEERED RESIDUE IN CHAIN C, CYS 104 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ARG 105 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN C, MET 121 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN C, MET 125 TO ILE REMARK 400 ENGINEERED RESIDUE IN CHAIN C, MET 128 TO ILE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 104 REMARK 465 ALA A 105 REMARK 465 SER A 106 REMARK 465 LEU A 107 REMARK 465 ARG A 108 REMARK 465 SER A 109 REMARK 465 ALA A 190 REMARK 465 ARG A 191 REMARK 465 GLN A 192 REMARK 465 ALA A 193 REMARK 465 ASN A 194 REMARK 465 GLN A 205 REMARK 465 ARG A 206 REMARK 465 TYR A 207 REMARK 465 SER A 208 REMARK 465 SER A 209 REMARK 465 ARG A 210 REMARK 465 GLU A 324 REMARK 465 ARG A 325 REMARK 465 ASN A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 MET B 104 REMARK 465 ALA B 105 REMARK 465 SER B 106 REMARK 465 PRO B 187 REMARK 465 ASN B 188 REMARK 465 LEU B 189 REMARK 465 ALA B 190 REMARK 465 ARG B 191 REMARK 465 GLN B 192 REMARK 465 ALA B 193 REMARK 465 ASN B 194 REMARK 465 PRO B 204 REMARK 465 GLN B 205 REMARK 465 ARG B 206 REMARK 465 TYR B 207 REMARK 465 SER B 208 REMARK 465 SER B 209 REMARK 465 ARG B 210 REMARK 465 ARG B 211 REMARK 465 ALA B 212 REMARK 465 GLU B 324 REMARK 465 ARG B 325 REMARK 465 ASN B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 MET C 104 REMARK 465 ALA C 105 REMARK 465 SER C 106 REMARK 465 LEU C 107 REMARK 465 ARG C 108 REMARK 465 SER C 166 REMARK 465 ASP C 167 REMARK 465 VAL C 168 REMARK 465 ASN C 188 REMARK 465 LEU C 189 REMARK 465 ALA C 190 REMARK 465 ARG C 191 REMARK 465 GLN C 192 REMARK 465 ALA C 193 REMARK 465 ASN C 194 REMARK 465 PRO C 204 REMARK 465 GLN C 205 REMARK 465 ARG C 206 REMARK 465 TYR C 207 REMARK 465 SER C 208 REMARK 465 SER C 209 REMARK 465 ARG C 210 REMARK 465 ARG C 211 REMARK 465 GLU C 324 REMARK 465 ARG C 325 REMARK 465 ASN C 326 REMARK 465 HIS C 327 REMARK 465 HIS C 328 REMARK 465 HIS C 329 REMARK 465 HIS C 330 REMARK 465 HIS C 331 REMARK 465 HIS C 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 110 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 168 80.92 56.46 REMARK 500 ALA A 212 57.94 -156.19 REMARK 500 LYS A 274 25.70 -79.65 REMARK 500 ARG A 279 118.18 -162.68 REMARK 500 ALA A 284 51.70 -146.50 REMARK 500 SER A 290 -58.06 -126.84 REMARK 500 LYS B 243 19.25 58.97 REMARK 500 PRO B 283 -76.17 -75.54 REMARK 500 ARG C 215 172.19 -53.56 REMARK 500 SER C 290 -77.14 -102.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1325 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W7A RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN LINE-1 ORF1P CENTRAL DOMAIN REMARK 900 RELATED ID: 2JRB RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF ORF1P FROM MOUSE LINE-1 REMARK 900 RELATED ID: 2YKO RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN LINE-1 ORF1P TRIMER REMARK 900 RELATED ID: 2YKQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN LINE-1 ORF1P TRIMER REMARK 900 RELATED ID: 2LDY RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE RRM-CTD DOMAINS OF HUMAN LINE-1 ORF1P REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FOLLOWING RESIDUES HAVE BEEN MUTATED, C104M, R105A, REMARK 999 M121A, M125I, M128I. THE LAST 6 AMINO ACIDS ARE A REMARK 999 HEXAHISTIDINE PURIFICATION TAG. DBREF 2YKP A 104 326 UNP Q15605 Q15605_HUMAN 104 326 DBREF 2YKP B 104 326 UNP Q15605 Q15605_HUMAN 104 326 DBREF 2YKP C 104 326 UNP Q15605 Q15605_HUMAN 104 326 SEQADV 2YKP MET A 104 UNP Q15605 CYS 104 ENGINEERED MUTATION SEQADV 2YKP ALA A 105 UNP Q15605 ARG 105 ENGINEERED MUTATION SEQADV 2YKP HIS A 327 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS A 328 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS A 329 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS A 330 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS A 331 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS A 332 UNP Q15605 EXPRESSION TAG SEQADV 2YKP ALA A 121 UNP Q15605 MET 121 ENGINEERED MUTATION SEQADV 2YKP ILE A 125 UNP Q15605 MET 125 ENGINEERED MUTATION SEQADV 2YKP ILE A 128 UNP Q15605 MET 128 ENGINEERED MUTATION SEQADV 2YKP MET B 104 UNP Q15605 CYS 104 ENGINEERED MUTATION SEQADV 2YKP ALA B 105 UNP Q15605 ARG 105 ENGINEERED MUTATION SEQADV 2YKP HIS B 327 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS B 328 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS B 329 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS B 330 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS B 331 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS B 332 UNP Q15605 EXPRESSION TAG SEQADV 2YKP ALA B 121 UNP Q15605 MET 121 ENGINEERED MUTATION SEQADV 2YKP ILE B 125 UNP Q15605 MET 125 ENGINEERED MUTATION SEQADV 2YKP ILE B 128 UNP Q15605 MET 128 ENGINEERED MUTATION SEQADV 2YKP MET C 104 UNP Q15605 CYS 104 ENGINEERED MUTATION SEQADV 2YKP ALA C 105 UNP Q15605 ARG 105 ENGINEERED MUTATION SEQADV 2YKP HIS C 327 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS C 328 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS C 329 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS C 330 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS C 331 UNP Q15605 EXPRESSION TAG SEQADV 2YKP HIS C 332 UNP Q15605 EXPRESSION TAG SEQADV 2YKP ALA C 121 UNP Q15605 MET 121 ENGINEERED MUTATION SEQADV 2YKP ILE C 125 UNP Q15605 MET 125 ENGINEERED MUTATION SEQADV 2YKP ILE C 128 UNP Q15605 MET 128 ENGINEERED MUTATION SEQRES 1 A 229 MET ALA SER LEU ARG SER ARG CYS ASP GLN LEU GLU GLU SEQRES 2 A 229 ARG VAL SER ALA ALA GLU ASP GLU ILE ASN GLU ILE LYS SEQRES 3 A 229 ARG GLU GLY LYS PHE ARG GLU LYS ARG ILE LYS ARG ASN SEQRES 4 A 229 GLU GLN SER LEU GLN GLU ILE TRP ASP TYR VAL LYS ARG SEQRES 5 A 229 PRO ASN LEU ARG LEU ILE GLY VAL PRO GLU SER ASP VAL SEQRES 6 A 229 GLU ASN GLY THR LYS LEU GLU ASN THR LEU GLN ASP ILE SEQRES 7 A 229 ILE GLN GLU ASN PHE PRO ASN LEU ALA ARG GLN ALA ASN SEQRES 8 A 229 VAL GLN ILE GLN GLU ILE GLN ARG THR PRO GLN ARG TYR SEQRES 9 A 229 SER SER ARG ARG ALA THR PRO ARG HIS ILE ILE VAL ARG SEQRES 10 A 229 PHE THR LYS VAL GLU MET LYS GLU LYS MET LEU ARG ALA SEQRES 11 A 229 ALA ARG GLU LYS GLY ARG VAL THR LEU LYS GLY LYS PRO SEQRES 12 A 229 ILE ARG LEU THR VAL ASP LEU SER ALA GLU THR LEU GLN SEQRES 13 A 229 ALA ARG ARG GLU TRP GLY PRO ILE PHE ASN ILE LEU LYS SEQRES 14 A 229 GLU LYS ASN PHE GLN PRO ARG ILE SER TYR PRO ALA LYS SEQRES 15 A 229 LEU SER PHE ILE SER GLU GLY GLU ILE LYS TYR PHE ILE SEQRES 16 A 229 ASP LYS GLN MET LEU ARG ASP PHE VAL THR THR ARG PRO SEQRES 17 A 229 ALA LEU LYS GLU LEU LEU LYS GLU ALA LEU ASN MET GLU SEQRES 18 A 229 ARG ASN HIS HIS HIS HIS HIS HIS SEQRES 1 B 229 MET ALA SER LEU ARG SER ARG CYS ASP GLN LEU GLU GLU SEQRES 2 B 229 ARG VAL SER ALA ALA GLU ASP GLU ILE ASN GLU ILE LYS SEQRES 3 B 229 ARG GLU GLY LYS PHE ARG GLU LYS ARG ILE LYS ARG ASN SEQRES 4 B 229 GLU GLN SER LEU GLN GLU ILE TRP ASP TYR VAL LYS ARG SEQRES 5 B 229 PRO ASN LEU ARG LEU ILE GLY VAL PRO GLU SER ASP VAL SEQRES 6 B 229 GLU ASN GLY THR LYS LEU GLU ASN THR LEU GLN ASP ILE SEQRES 7 B 229 ILE GLN GLU ASN PHE PRO ASN LEU ALA ARG GLN ALA ASN SEQRES 8 B 229 VAL GLN ILE GLN GLU ILE GLN ARG THR PRO GLN ARG TYR SEQRES 9 B 229 SER SER ARG ARG ALA THR PRO ARG HIS ILE ILE VAL ARG SEQRES 10 B 229 PHE THR LYS VAL GLU MET LYS GLU LYS MET LEU ARG ALA SEQRES 11 B 229 ALA ARG GLU LYS GLY ARG VAL THR LEU LYS GLY LYS PRO SEQRES 12 B 229 ILE ARG LEU THR VAL ASP LEU SER ALA GLU THR LEU GLN SEQRES 13 B 229 ALA ARG ARG GLU TRP GLY PRO ILE PHE ASN ILE LEU LYS SEQRES 14 B 229 GLU LYS ASN PHE GLN PRO ARG ILE SER TYR PRO ALA LYS SEQRES 15 B 229 LEU SER PHE ILE SER GLU GLY GLU ILE LYS TYR PHE ILE SEQRES 16 B 229 ASP LYS GLN MET LEU ARG ASP PHE VAL THR THR ARG PRO SEQRES 17 B 229 ALA LEU LYS GLU LEU LEU LYS GLU ALA LEU ASN MET GLU SEQRES 18 B 229 ARG ASN HIS HIS HIS HIS HIS HIS SEQRES 1 C 229 MET ALA SER LEU ARG SER ARG CYS ASP GLN LEU GLU GLU SEQRES 2 C 229 ARG VAL SER ALA ALA GLU ASP GLU ILE ASN GLU ILE LYS SEQRES 3 C 229 ARG GLU GLY LYS PHE ARG GLU LYS ARG ILE LYS ARG ASN SEQRES 4 C 229 GLU GLN SER LEU GLN GLU ILE TRP ASP TYR VAL LYS ARG SEQRES 5 C 229 PRO ASN LEU ARG LEU ILE GLY VAL PRO GLU SER ASP VAL SEQRES 6 C 229 GLU ASN GLY THR LYS LEU GLU ASN THR LEU GLN ASP ILE SEQRES 7 C 229 ILE GLN GLU ASN PHE PRO ASN LEU ALA ARG GLN ALA ASN SEQRES 8 C 229 VAL GLN ILE GLN GLU ILE GLN ARG THR PRO GLN ARG TYR SEQRES 9 C 229 SER SER ARG ARG ALA THR PRO ARG HIS ILE ILE VAL ARG SEQRES 10 C 229 PHE THR LYS VAL GLU MET LYS GLU LYS MET LEU ARG ALA SEQRES 11 C 229 ALA ARG GLU LYS GLY ARG VAL THR LEU LYS GLY LYS PRO SEQRES 12 C 229 ILE ARG LEU THR VAL ASP LEU SER ALA GLU THR LEU GLN SEQRES 13 C 229 ALA ARG ARG GLU TRP GLY PRO ILE PHE ASN ILE LEU LYS SEQRES 14 C 229 GLU LYS ASN PHE GLN PRO ARG ILE SER TYR PRO ALA LYS SEQRES 15 C 229 LEU SER PHE ILE SER GLU GLY GLU ILE LYS TYR PHE ILE SEQRES 16 C 229 ASP LYS GLN MET LEU ARG ASP PHE VAL THR THR ARG PRO SEQRES 17 C 229 ALA LEU LYS GLU LEU LEU LYS GLU ALA LEU ASN MET GLU SEQRES 18 C 229 ARG ASN HIS HIS HIS HIS HIS HIS HET CL A1324 1 HET CL A1325 1 HETNAM CL CHLORIDE ION FORMUL 4 CL 2(CL 1-) HELIX 1 1 CYS A 111 VAL A 153 1 43 HELIX 2 2 GLY A 171 ASN A 185 1 15 HELIX 3 3 VAL A 224 LYS A 237 1 14 HELIX 4 4 ALA A 255 ARG A 262 1 8 HELIX 5 5 GLY A 265 GLU A 273 1 9 HELIX 6 6 LYS A 300 VAL A 307 1 8 HELIX 7 7 PRO A 311 LEU A 316 1 6 HELIX 8 8 ARG B 108 LYS B 154 1 47 HELIX 9 9 GLY B 171 ASN B 185 1 15 HELIX 10 10 VAL B 224 LYS B 237 1 14 HELIX 11 11 ALA B 255 GLU B 273 1 19 HELIX 12 12 LYS B 300 PHE B 306 1 7 HELIX 13 13 PRO B 311 LEU B 317 1 7 HELIX 14 14 ARG C 110 VAL C 153 1 44 HELIX 15 15 GLY C 171 ASN C 185 1 15 HELIX 16 16 VAL C 224 LYS C 237 1 14 HELIX 17 17 ALA C 255 GLU C 273 1 19 HELIX 18 18 LYS C 300 VAL C 307 1 8 HELIX 19 19 PRO C 311 LEU C 317 1 7 SHEET 1 AA 5 ILE A 197 ARG A 202 0 SHEET 2 AA 5 ILE A 217 PHE A 221 -1 O ILE A 218 N GLN A 201 SHEET 3 AA 5 LEU A 158 ILE A 161 -1 O LEU A 158 N VAL A 219 SHEET 4 AA 5 LYS A 245 VAL A 251 -1 O ARG A 248 N ILE A 161 SHEET 5 AA 5 VAL A 240 LEU A 242 -1 O VAL A 240 N ILE A 247 SHEET 1 AB 3 ARG A 279 SER A 281 0 SHEET 2 AB 3 LYS A 285 ILE A 289 -1 O LYS A 285 N SER A 281 SHEET 3 AB 3 ILE A 294 PHE A 297 -1 O LYS A 295 N PHE A 288 SHEET 1 BA 5 ILE B 197 ARG B 202 0 SHEET 2 BA 5 ILE B 217 PHE B 221 -1 O ILE B 218 N GLN B 201 SHEET 3 BA 5 ASN B 157 ILE B 161 -1 O LEU B 158 N VAL B 219 SHEET 4 BA 5 LYS B 245 VAL B 251 -1 O ARG B 248 N ILE B 161 SHEET 5 BA 5 VAL B 240 LEU B 242 -1 O VAL B 240 N ILE B 247 SHEET 1 BB 3 ARG B 279 SER B 281 0 SHEET 2 BB 3 LYS B 285 ILE B 289 -1 O LYS B 285 N SER B 281 SHEET 3 BB 3 ILE B 294 PHE B 297 -1 O LYS B 295 N PHE B 288 SHEET 1 CA 4 ILE C 197 ARG C 202 0 SHEET 2 CA 4 ILE C 217 PHE C 221 -1 O ILE C 218 N GLN C 201 SHEET 3 CA 4 ASN C 157 ILE C 161 -1 O LEU C 158 N VAL C 219 SHEET 4 CA 4 ARG C 248 VAL C 251 -1 O ARG C 248 N ILE C 161 SHEET 1 CB 2 THR C 241 LEU C 242 0 SHEET 2 CB 2 LYS C 245 PRO C 246 -1 O LYS C 245 N LEU C 242 SHEET 1 CC 3 ARG C 279 SER C 281 0 SHEET 2 CC 3 LYS C 285 ILE C 289 -1 O LYS C 285 N SER C 281 SHEET 3 CC 3 ILE C 294 PHE C 297 -1 O LYS C 295 N PHE C 288 CISPEP 1 THR A 203 PRO A 204 0 2.52 CISPEP 2 TYR A 282 PRO A 283 0 -1.07 CISPEP 3 TYR B 282 PRO B 283 0 -3.32 CISPEP 4 TYR C 282 PRO C 283 0 -1.75 SITE 1 AC1 3 ASN A 142 ASN B 142 ASN C 142 SITE 1 AC2 3 ARG A 135 ARG B 135 ARG C 135 CRYST1 73.730 89.920 111.620 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013563 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008959 0.00000