HEADER RNA BINDING PROTEIN 01-JUN-11 2YLB TITLE STRUCTURE OF SALMONELLA TYPHIMURIUM HFQ AT 1.15 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HFQ; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 1-72; COMPND 5 SYNONYM: HOST FACTOR-I PROTEIN, HF-I, HFQ PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE SEQUENCE IS PRECEDED BY A GA TAG REMAINING FROM COMPND 8 THE PURIFICATION TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2; SOURCE 6 ATCC: 700720; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET M60 KEYWDS RNA-BINDING PROTEIN, LSM PROTEIN, RNA CHAPERONE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.SAUER,O.WEICHENRIEDER REVDAT 4 20-DEC-23 2YLB 1 REMARK REVDAT 3 24-AUG-11 2YLB 1 JRNL REVDAT 2 03-AUG-11 2YLB 1 ATOM ANISOU MASTER END REVDAT 1 20-JUL-11 2YLB 0 JRNL AUTH E.SAUER,O.WEICHENRIEDER JRNL TITL STRUCTURAL BASIS FOR RNA 3' END RECOGNITION BY HFQ JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 13065 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21737752 JRNL DOI 10.1073/PNAS.1103420108 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 123284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.8425 - 2.4759 0.95 11382 606 0.1722 0.2028 REMARK 3 2 2.4759 - 1.9659 0.97 11668 569 0.1373 0.1659 REMARK 3 3 1.9659 - 1.7176 0.98 11735 625 0.1370 0.1734 REMARK 3 4 1.7176 - 1.5606 0.98 11725 625 0.1445 0.1998 REMARK 3 5 1.5606 - 1.4488 0.99 11819 630 0.1559 0.2047 REMARK 3 6 1.4488 - 1.3634 0.99 11760 636 0.1740 0.2262 REMARK 3 7 1.3634 - 1.2952 0.99 11847 639 0.1918 0.2472 REMARK 3 8 1.2952 - 1.2388 0.99 11826 622 0.2104 0.2549 REMARK 3 9 1.2388 - 1.1911 0.98 11717 642 0.2311 0.2753 REMARK 3 10 1.1911 - 1.1500 0.97 11634 577 0.2446 0.2972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.46 REMARK 3 B_SOL : 45.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37130 REMARK 3 B22 (A**2) : 0.37130 REMARK 3 B33 (A**2) : -0.74260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3423 REMARK 3 ANGLE : 1.614 4665 REMARK 3 CHIRALITY : 0.093 546 REMARK 3 PLANARITY : 0.008 602 REMARK 3 DIHEDRAL : 13.238 1313 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE REFINED IN THE RIDING REMARK 3 POSITIONS. B FACTORS WERE REFINED ANISOTROPICALLY FOR NON- REMARK 3 HYDROGEN ATOMS. THE FOLLOWING RESIDUES WERE MODELED AS DOUBLE REMARK 3 CONFORMATIONS. CHAIN A, RESIDUES 60, 66. CHAIN B, RESIDUES 17, REMARK 3 19, 36, 38, 60, 66. CHAIN C, RESIDUES 17, 38, 60, 61, 66. CHAIN REMARK 3 D, RESIDUES 13, 36. CHAIN E, RESIDUES 36, 66. CHAIN F, RESIDUE REMARK 3 61.THE FOLLOWING RESIDUES ARE DISORDERED. CHAIN A, RESIDUES 1 TO REMARK 3 5, 71 TO 72. CHAIN B, RESIDUES 1 TO 6, 72. CHAIN C, RESIDUES 1 REMARK 3 TO 3, 72. CHAIN D, RESIDUES 1 TO 3, 72. CHAIN E, RESIDUES 1 TO 3, REMARK 3 72. CHAIN F, RESIDUES 1 TO 5, 72. REMARK 4 REMARK 4 2YLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.827 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123284 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64000 REMARK 200 FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HK9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH=7.0), 0.5 % JEFFAMINE, REMARK 280 1.1 M MALONATE, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.67667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.35333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.51500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 139.19167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.83833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 GLN A 5 REMARK 465 HIS A 71 REMARK 465 SER A 72 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 4 REMARK 465 GLN B 5 REMARK 465 SER B 6 REMARK 465 SER B 72 REMARK 465 GLY C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 LYS C 3 REMARK 465 SER C 72 REMARK 465 GLY D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 LYS D 3 REMARK 465 SER D 72 REMARK 465 GLY E -1 REMARK 465 ALA E 0 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 LYS E 3 REMARK 465 SER E 72 REMARK 465 GLY F -1 REMARK 465 ALA F 0 REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 LYS F 3 REMARK 465 GLY F 4 REMARK 465 GLN F 5 REMARK 465 SER F 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 23 HZ2 LYS A 31 1.49 REMARK 500 OG SER A 23 NZ LYS A 31 2.02 REMARK 500 OD1 ASP B 9 O HOH B 2006 2.13 REMARK 500 O HOH A 2032 O HOH F 2004 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU C 7 CB - CG - CD2 ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG C 19 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU D 45 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG E 19 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 40 -159.85 -137.72 REMARK 500 ASN A 48 -100.41 -134.98 REMARK 500 ASP B 40 -158.17 -135.97 REMARK 500 ASN B 48 -116.25 -144.10 REMARK 500 ASN C 48 -111.53 -145.33 REMARK 500 SER C 60 -60.35 -91.35 REMARK 500 ASN D 48 -105.81 -137.94 REMARK 500 ASP E 40 -159.48 -135.57 REMARK 500 ASN E 48 -107.75 -134.32 REMARK 500 ASP F 40 -158.19 -140.60 REMARK 500 ASN F 48 -102.17 -134.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2032 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH D2037 DISTANCE = 5.92 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 30-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 31-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YLC RELATED DB: PDB REMARK 900 STRUCTURE OF SALMONELLA TYPHIMURIUM HFQ IN COMPLEX WITH U6 RNA REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS PRECEDED BY A GA TAG REMAINING FROM THE REMARK 999 PURIFICATION TAG DBREF 2YLB A 1 72 UNP P0A1R0 HFQ_SALTY 1 72 DBREF 2YLB B 1 72 UNP P0A1R0 HFQ_SALTY 1 72 DBREF 2YLB C 1 72 UNP P0A1R0 HFQ_SALTY 1 72 DBREF 2YLB D 1 72 UNP P0A1R0 HFQ_SALTY 1 72 DBREF 2YLB E 1 72 UNP P0A1R0 HFQ_SALTY 1 72 DBREF 2YLB F 1 72 UNP P0A1R0 HFQ_SALTY 1 72 SEQADV 2YLB GLY A -1 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB ALA A 0 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB GLY B -1 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB ALA B 0 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB GLY C -1 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB ALA C 0 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB GLY D -1 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB ALA D 0 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB GLY E -1 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB ALA E 0 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB GLY F -1 UNP P0A1R0 EXPRESSION TAG SEQADV 2YLB ALA F 0 UNP P0A1R0 EXPRESSION TAG SEQRES 1 A 74 GLY ALA MET ALA LYS GLY GLN SER LEU GLN ASP PRO PHE SEQRES 2 A 74 LEU ASN ALA LEU ARG ARG GLU ARG VAL PRO VAL SER ILE SEQRES 3 A 74 TYR LEU VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SEQRES 4 A 74 SER PHE ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SEQRES 5 A 74 SER GLN MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL SEQRES 6 A 74 PRO SER ARG PRO VAL SER HIS HIS SER SEQRES 1 B 74 GLY ALA MET ALA LYS GLY GLN SER LEU GLN ASP PRO PHE SEQRES 2 B 74 LEU ASN ALA LEU ARG ARG GLU ARG VAL PRO VAL SER ILE SEQRES 3 B 74 TYR LEU VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SEQRES 4 B 74 SER PHE ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SEQRES 5 B 74 SER GLN MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL SEQRES 6 B 74 PRO SER ARG PRO VAL SER HIS HIS SER SEQRES 1 C 74 GLY ALA MET ALA LYS GLY GLN SER LEU GLN ASP PRO PHE SEQRES 2 C 74 LEU ASN ALA LEU ARG ARG GLU ARG VAL PRO VAL SER ILE SEQRES 3 C 74 TYR LEU VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SEQRES 4 C 74 SER PHE ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SEQRES 5 C 74 SER GLN MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL SEQRES 6 C 74 PRO SER ARG PRO VAL SER HIS HIS SER SEQRES 1 D 74 GLY ALA MET ALA LYS GLY GLN SER LEU GLN ASP PRO PHE SEQRES 2 D 74 LEU ASN ALA LEU ARG ARG GLU ARG VAL PRO VAL SER ILE SEQRES 3 D 74 TYR LEU VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SEQRES 4 D 74 SER PHE ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SEQRES 5 D 74 SER GLN MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL SEQRES 6 D 74 PRO SER ARG PRO VAL SER HIS HIS SER SEQRES 1 E 74 GLY ALA MET ALA LYS GLY GLN SER LEU GLN ASP PRO PHE SEQRES 2 E 74 LEU ASN ALA LEU ARG ARG GLU ARG VAL PRO VAL SER ILE SEQRES 3 E 74 TYR LEU VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SEQRES 4 E 74 SER PHE ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SEQRES 5 E 74 SER GLN MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL SEQRES 6 E 74 PRO SER ARG PRO VAL SER HIS HIS SER SEQRES 1 F 74 GLY ALA MET ALA LYS GLY GLN SER LEU GLN ASP PRO PHE SEQRES 2 F 74 LEU ASN ALA LEU ARG ARG GLU ARG VAL PRO VAL SER ILE SEQRES 3 F 74 TYR LEU VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SEQRES 4 F 74 SER PHE ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SEQRES 5 F 74 SER GLN MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL SEQRES 6 F 74 PRO SER ARG PRO VAL SER HIS HIS SER FORMUL 7 HOH *376(H2 O) HELIX 1 1 GLN A 8 GLU A 18 1 11 HELIX 2 2 GLN B 8 ARG B 17 1 10 HELIX 3 3 GLN C 8 GLU C 18 1 11 HELIX 4 4 GLN D 8 GLU D 18 1 11 HELIX 5 5 GLN E 8 GLU E 18 1 11 HELIX 6 6 GLN F 8 GLU F 18 1 11 SHEET 1 AA31 VAL A 22 LEU A 26 0 SHEET 2 AA31 LYS A 31 PHE A 39 -1 O LEU A 32 N ILE A 24 SHEET 3 AA31 VAL A 43 LYS A 47 -1 O LEU A 45 N GLU A 37 SHEET 4 AA31 SER A 51 TYR A 55 -1 O GLN A 52 N LEU A 46 SHEET 5 AA31 ILE F 59 PRO F 64 -1 O SER F 60 N TYR A 55 SHEET 6 AA31 VAL F 22 LEU F 26 -1 O SER F 23 N VAL F 63 SHEET 7 AA31 LYS F 31 PHE F 39 -1 O LEU F 32 N ILE F 24 SHEET 8 AA31 VAL F 43 LYS F 47 -1 O LEU F 45 N GLU F 37 SHEET 9 AA31 SER F 51 TYR F 55 -1 O GLN F 52 N LEU F 46 SHEET 10 AA31 ILE E 59 PRO E 64 -1 O SER E 60 N TYR F 55 SHEET 11 AA31 VAL E 22 LEU E 26 -1 O SER E 23 N VAL E 63 SHEET 12 AA31 LYS E 31 PHE E 39 -1 O LEU E 32 N ILE E 24 SHEET 13 AA31 VAL E 43 LYS E 47 -1 O LEU E 45 N GLU E 37 SHEET 14 AA31 SER E 51 TYR E 55 -1 O GLN E 52 N LEU E 46 SHEET 15 AA31 ILE D 59 PRO D 64 -1 O SER D 60 N TYR E 55 SHEET 16 AA31 VAL D 22 LEU D 26 -1 O SER D 23 N VAL D 63 SHEET 17 AA31 LYS D 31 PHE D 39 -1 O LEU D 32 N ILE D 24 SHEET 18 AA31 VAL D 43 LYS D 47 -1 O LEU D 45 N GLU D 37 SHEET 19 AA31 SER D 51 TYR D 55 -1 O GLN D 52 N LEU D 46 SHEET 20 AA31 ILE C 59 PRO C 64 -1 O SER C 60 N TYR D 55 SHEET 21 AA31 VAL C 22 LEU C 26 -1 O SER C 23 N VAL C 63 SHEET 22 AA31 LYS C 31 PHE C 39 -1 O LEU C 32 N ILE C 24 SHEET 23 AA31 VAL C 43 LYS C 47 -1 O LEU C 45 N GLU C 37 SHEET 24 AA31 SER C 51 TYR C 55 -1 O GLN C 52 N LEU C 46 SHEET 25 AA31 ILE B 59 PRO B 64 -1 O SER B 60 N TYR C 55 SHEET 26 AA31 VAL B 22 LEU B 26 -1 O SER B 23 N VAL B 63 SHEET 27 AA31 LYS B 31 PHE B 39 -1 O LEU B 32 N ILE B 24 SHEET 28 AA31 VAL B 43 LYS B 47 -1 O LEU B 45 N GLU B 37 SHEET 29 AA31 SER B 51 TYR B 55 -1 O GLN B 52 N LEU B 46 SHEET 30 AA31 ILE A 59 PRO A 64 -1 O SER A 60 N TYR B 55 SHEET 31 AA31 VAL A 22 LEU A 26 -1 O SER A 23 N VAL A 63 CRYST1 61.400 61.400 167.030 90.00 90.00 120.00 P 61 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016287 0.009403 0.000000 0.00000 SCALE2 0.000000 0.018806 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005987 0.00000