HEADER ACTIN-BINDING PROTEIN 01-JUN-11 2YLE TITLE CRYSTAL STRUCTURE OF THE HUMAN SPIR-1 KIND FSI DOMAIN IN TITLE 2 COMPLEX WITH THE FSI PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SPIRE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN SPIR-1 DOMAIN (KIND), RESIDUES 36-236; COMPND 5 SYNONYM: SPIR-1, HUMAN SPIR-1 KIND; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FORMIN-2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: 29 RESIDUE C-TERMINAL PEPTIDE, RESIDUES 1694-1722; COMPND 11 SYNONYM: FMN2 PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS ACTIN-BINDING PROTEIN, ACTIN POLYMERIZATION EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,M.PECHLIVANIS,C.VONRHEIN,E.KERKHOFF REVDAT 3 15-AUG-12 2YLE 1 JRNL REMARK VERSN REVDAT 2 06-JUL-11 2YLE 1 AUTHOR REVDAT 1 08-JUN-11 2YLE 0 JRNL AUTH K.ZETH,M.PECHLIVANIS,A.SAMOL,S.PLEISER,C.VONRHEIN, JRNL AUTH 2 E.KERKHOFF JRNL TITL MOLECULAR BASIS OF ACTIN NUCLEATION FACTOR COOPERATIVITY: JRNL TITL 2 CRYSTAL STRUCTURE OF THE SPIR-1 KINASE NON-CATALYTIC C-LOBE JRNL TITL 3 DOMAIN (KIND)FORMIN-2 FORMIN SPIR INTERACTION MOTIF (FSI) JRNL TITL 4 COMPLEX. JRNL REF J.BIOL.CHEM. V. 286 30732 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21705804 JRNL DOI 10.1074/JBC.M111.257782 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 16921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18884 REMARK 3 R VALUE (WORKING SET) : 0.18651 REMARK 3 FREE R VALUE : 0.23577 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.800 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.847 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.231 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.276 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.059 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53 REMARK 3 B22 (A**2) : -0.53 REMARK 3 B33 (A**2) : 0.80 REMARK 3 B12 (A**2) : -0.27 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.190 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1560 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2110 ; 1.226 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 4.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;35.541 ;22.778 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 283 ;14.412 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;11.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 238 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1167 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 969 ; 0.830 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1556 ; 1.529 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 591 ; 2.103 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 550 ; 3.509 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1980 27.6520 30.7470 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: 0.2347 REMARK 3 T33: 0.0356 T12: 0.0171 REMARK 3 T13: -0.0079 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 3.8076 L22: 6.3628 REMARK 3 L33: 4.8876 L12: -3.9678 REMARK 3 L13: -0.0428 L23: 3.2167 REMARK 3 S TENSOR REMARK 3 S11: -0.1792 S12: -0.5172 S13: -0.0313 REMARK 3 S21: 0.2497 S22: 0.1610 S23: 0.0971 REMARK 3 S31: 0.0609 S32: -0.1338 S33: 0.0182 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6880 24.4940 17.5430 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0953 REMARK 3 T33: 0.0889 T12: 0.0099 REMARK 3 T13: 0.0006 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.4225 L22: 0.1039 REMARK 3 L33: 0.7836 L12: -0.4510 REMARK 3 L13: 0.3289 L23: 0.1102 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: -0.1425 S13: -0.2213 REMARK 3 S21: -0.0540 S22: -0.0364 S23: 0.0066 REMARK 3 S31: 0.0557 S32: -0.0826 S33: -0.0261 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2790 36.2410 12.7810 REMARK 3 T TENSOR REMARK 3 T11: 0.0386 T22: 0.0774 REMARK 3 T33: 0.0834 T12: 0.0202 REMARK 3 T13: 0.0124 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.0441 L22: 0.4826 REMARK 3 L33: 0.5096 L12: -0.1161 REMARK 3 L13: 0.2763 L23: 0.2029 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.0736 S13: 0.2598 REMARK 3 S21: -0.0308 S22: -0.0448 S23: 0.0013 REMARK 3 S31: -0.0679 S32: -0.1005 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6870 27.5490 25.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.0447 T22: 0.1051 REMARK 3 T33: 0.0828 T12: -0.0061 REMARK 3 T13: 0.0107 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.7142 L22: 0.5646 REMARK 3 L33: 12.7670 L12: -0.1944 REMARK 3 L13: 2.7879 L23: -1.8442 REMARK 3 S TENSOR REMARK 3 S11: 0.0632 S12: -0.0291 S13: 0.0308 REMARK 3 S21: 0.0583 S22: -0.0197 S23: -0.0212 REMARK 3 S31: -0.0567 S32: 0.0168 S33: -0.0435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. THE FIRST EIGHT RESIDUES OF THE PEPTIDE REMARK 3 WERE NOT OBSERVED OWING TO DISORDER. REMARK 4 REMARK 4 2YLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-11. REMARK 100 THE PDBE ID CODE IS EBI-48511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PSI PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16921 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.80 REMARK 200 RESOLUTION RANGE LOW (A) : 28.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.3 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 5.5 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.6 REMARK 200 R MERGE FOR SHELL (I) : 0.74 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, DM, BUCCANEER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.97600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.98800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.98800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.97600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 SER A 9 REMARK 465 TYR A 10 REMARK 465 TYR A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 ASP A 18 REMARK 465 TYR A 19 REMARK 465 ASP A 20 REMARK 465 ILE A 21 REMARK 465 PRO A 22 REMARK 465 THR A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 LEU A 27 REMARK 465 TYR A 28 REMARK 465 PHE A 29 REMARK 465 GLN A 30 REMARK 465 GLY A 31 REMARK 465 ALA A 32 REMARK 465 MET A 33 REMARK 465 ALA A 102 REMARK 465 ASP A 103 REMARK 465 ASP A 104 REMARK 465 ALA A 105 REMARK 465 GLY A 106 REMARK 465 GLU A 107 REMARK 465 PRO A 108 REMARK 465 PRO A 109 REMARK 465 PRO A 110 REMARK 465 VAL A 111 REMARK 465 ALA A 112 REMARK 465 GLY A 113 REMARK 465 ALA A 166 REMARK 465 ASP A 167 REMARK 465 GLY A 168 REMARK 465 SER A 169 REMARK 465 ASN A 170 REMARK 465 ASP A 171 REMARK 465 GLU A 172 REMARK 465 GLY A 173 REMARK 465 TYR A 174 REMARK 465 GLU A 175 REMARK 465 ALA A 176 REMARK 465 ALA A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 GLY A 180 REMARK 465 LEU A 181 REMARK 465 GLY A 182 REMARK 465 ASP A 183 REMARK 465 GLU A 184 REMARK 465 ASP A 185 REMARK 465 VAL B 1694 REMARK 465 CYS B 1695 REMARK 465 ARG B 1696 REMARK 465 GLN B 1697 REMARK 465 LYS B 1698 REMARK 465 LYS B 1699 REMARK 465 GLY B 1700 REMARK 465 LYS B 1701 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 62 CB B CYS A 62 SG B -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 115 46.39 -97.45 REMARK 500 TYR B1704 -94.39 45.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YLF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN SPIR-1 KIND DOMAIN DBREF 2YLE A 36 236 UNP Q08AE8 SPIR1_HUMAN 36 236 DBREF 2YLE B 1694 1722 UNP Q9NZ56 FMN2_HUMAN 1694 1722 SEQADV 2YLE MET A 8 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE SER A 9 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE TYR A 10 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE TYR A 11 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE HIS A 12 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE HIS A 13 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE HIS A 14 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE HIS A 15 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE HIS A 16 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE HIS A 17 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE ASP A 18 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE TYR A 19 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE ASP A 20 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE ILE A 21 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE PRO A 22 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE THR A 23 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE THR A 24 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE GLU A 25 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE ASN A 26 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE LEU A 27 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE TYR A 28 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE PHE A 29 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE GLN A 30 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE GLY A 31 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE ALA A 32 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE MET A 33 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE GLY A 34 UNP Q08AE8 EXPRESSION TAG SEQADV 2YLE SER A 35 UNP Q08AE8 EXPRESSION TAG SEQRES 1 A 229 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 229 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 229 GLY SER SER ARG ASP ALA LEU SER LEU GLU GLU ILE LEU SEQRES 4 A 229 ARG LEU TYR ASN GLN PRO ILE ASN GLU GLU GLN ALA TRP SEQRES 5 A 229 ALA VAL CYS TYR GLN CYS CYS GLY SER LEU ARG ALA ALA SEQRES 6 A 229 ALA ARG ARG ARG GLN PRO ARG HIS ARG VAL ARG SER ALA SEQRES 7 A 229 ALA GLN ILE ARG VAL TRP ARG ASP GLY ALA VAL THR LEU SEQRES 8 A 229 ALA PRO ALA ALA ASP ASP ALA GLY GLU PRO PRO PRO VAL SEQRES 9 A 229 ALA GLY LYS LEU GLY TYR SER GLN CYS MET GLU THR GLU SEQRES 10 A 229 VAL ILE GLU SER LEU GLY ILE ILE ILE TYR LYS ALA LEU SEQRES 11 A 229 ASP TYR GLY LEU LYS GLU ASN GLU GLU ARG GLU LEU SER SEQRES 12 A 229 PRO PRO LEU GLU GLN LEU ILE ASP HIS MET ALA ASN THR SEQRES 13 A 229 VAL GLU ALA ASP GLY SER ASN ASP GLU GLY TYR GLU ALA SEQRES 14 A 229 ALA GLU GLU GLY LEU GLY ASP GLU ASP GLU LYS ARG LYS SEQRES 15 A 229 ILE SER ALA ILE ARG SER TYR ARG ASP VAL MET LYS LEU SEQRES 16 A 229 CYS ALA ALA HIS LEU PRO THR GLU SER ASP ALA PRO ASN SEQRES 17 A 229 HIS TYR GLN ALA VAL CYS ARG ALA LEU PHE ALA GLU THR SEQRES 18 A 229 MET GLU LEU HIS THR PHE LEU THR SEQRES 1 B 29 VAL CYS ARG GLN LYS LYS GLY LYS SER LEU TYR LYS ILE SEQRES 2 B 29 LYS PRO ARG HIS ASP SER GLY ILE LYS ALA LYS ILE SER SEQRES 3 B 29 MET LYS THR FORMUL 3 HOH *90(H2 O) HELIX 1 1 LEU A 42 ASN A 50 1 9 HELIX 2 2 ASN A 54 ARG A 75 1 22 HELIX 3 3 SER A 84 ALA A 86 5 3 HELIX 4 4 MET A 121 ASP A 138 1 18 HELIX 5 5 SER A 150 ALA A 161 1 12 HELIX 6 6 SER A 195 ALA A 205 1 11 HELIX 7 7 THR A 209 SER A 211 5 3 HELIX 8 8 ASP A 212 LEU A 235 1 24 HELIX 9 9 GLY B 1713 MET B 1720 1 8 SHEET 1 AA 3 ALA A 39 SER A 41 0 SHEET 2 AA 3 ILE A 88 TRP A 91 -1 O VAL A 90 N LEU A 40 SHEET 3 AA 3 VAL A 96 LEU A 98 -1 O THR A 97 N ARG A 89 SHEET 1 AB 2 GLU A 145 ARG A 147 0 SHEET 2 AB 2 ILE B1706 PRO B1708 -1 O LYS B1707 N GLU A 146 CRYST1 65.675 65.675 77.964 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015226 0.008791 0.000000 0.00000 SCALE2 0.000000 0.017582 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012826 0.00000