HEADER CARBOHYDRATE BINDING PROTEIN 07-JUN-11 2YMA TITLE X-RAY STRUCTURE OF THE YOS9 DIMERIZATION DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN OS-9 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DIMERIZATION DOMAIN, RESIDUES 266-424; COMPND 5 SYNONYM: YOS9P; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 T1R; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQLINKH KEYWDS CARBOHYDRATE BINDING PROTEIN, QUALITY CONTROL, ENDOPLASMIC RETICULUM- KEYWDS 2 ASSOCIATED PROTEIN DEGRADATION, HRD COMPLEX, MISFOLDED PROTEINS, KEYWDS 3 ENDOPLASMIC RETICULUM EXPDTA X-RAY DIFFRACTION AUTHOR J.HANNA,A.SCHUETZ,F.ZIMMERMANN,J.BEHLKE,T.SOMMER,U.HEINEMANN REVDAT 3 01-MAY-24 2YMA 1 REMARK REVDAT 2 28-MAR-12 2YMA 1 JRNL REVDAT 1 25-JAN-12 2YMA 0 JRNL AUTH J.HANNA,A.SCHUTZ,F.ZIMMERMANN,J.BEHLKE,T.SOMMER,U.HEINEMANN JRNL TITL STRUCTURAL AND BIOCHEMICAL BASIS OF YOS9 PROTEIN JRNL TITL 2 DIMERIZATION AND POSSIBLE CONTRIBUTION TO SELF-ASSOCIATION JRNL TITL 3 OF 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE JRNL TITL 4 DEGRADATION UBIQUITIN-LIGASE COMPLEX. JRNL REF J.BIOL.CHEM. V. 287 8633 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22262864 JRNL DOI 10.1074/JBC.M111.317644 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 15831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.7956 - 4.6217 0.98 2572 136 0.1847 0.2030 REMARK 3 2 4.6217 - 3.6699 0.99 2521 132 0.1546 0.1834 REMARK 3 3 3.6699 - 3.2065 1.00 2511 133 0.1848 0.2417 REMARK 3 4 3.2065 - 2.9135 1.00 2499 131 0.1950 0.2609 REMARK 3 5 2.9135 - 2.7048 1.00 2508 130 0.2091 0.2904 REMARK 3 6 2.7048 - 2.5454 0.97 2430 128 0.2177 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 81.36 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.05060 REMARK 3 B22 (A**2) : -9.05060 REMARK 3 B33 (A**2) : 18.10120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2119 REMARK 3 ANGLE : 1.145 2880 REMARK 3 CHIRALITY : 0.080 328 REMARK 3 PLANARITY : 0.004 370 REMARK 3 DIHEDRAL : 12.553 739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 265:310) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8717 48.9618 11.3076 REMARK 3 T TENSOR REMARK 3 T11: 0.3166 T22: 0.3248 REMARK 3 T33: 0.7322 T12: 0.0011 REMARK 3 T13: 0.0706 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.0451 L22: 1.4510 REMARK 3 L33: 2.7129 L12: -1.3574 REMARK 3 L13: 1.8645 L23: -2.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.3622 S13: 0.7039 REMARK 3 S21: 0.2738 S22: 0.0572 S23: -0.6489 REMARK 3 S31: -0.6847 S32: 0.4108 S33: -0.1241 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 311:399) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2186 36.0145 20.5204 REMARK 3 T TENSOR REMARK 3 T11: 0.2460 T22: 0.2938 REMARK 3 T33: 0.3386 T12: 0.0490 REMARK 3 T13: 0.0598 T23: -0.0904 REMARK 3 L TENSOR REMARK 3 L11: 2.5011 L22: 3.7224 REMARK 3 L33: 1.1477 L12: -2.1112 REMARK 3 L13: 0.2175 L23: 0.3829 REMARK 3 S TENSOR REMARK 3 S11: -0.1294 S12: 0.0582 S13: 0.3901 REMARK 3 S21: 0.0684 S22: 0.1688 S23: -0.1634 REMARK 3 S31: 0.1786 S32: 0.1780 S33: -0.0598 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 266:343) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7772 9.5385 17.6040 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.2293 REMARK 3 T33: 0.3357 T12: 0.0441 REMARK 3 T13: -0.0402 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.4909 L22: 6.8702 REMARK 3 L33: 3.6114 L12: -1.8757 REMARK 3 L13: -1.0275 L23: 0.1908 REMARK 3 S TENSOR REMARK 3 S11: -0.2635 S12: 0.0931 S13: -0.0595 REMARK 3 S21: 0.3615 S22: 0.1736 S23: 0.2965 REMARK 3 S31: 0.2040 S32: -0.1190 S33: 0.0612 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 344:397) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7765 19.4018 18.5776 REMARK 3 T TENSOR REMARK 3 T11: 0.4084 T22: 0.3882 REMARK 3 T33: 0.2611 T12: 0.1002 REMARK 3 T13: 0.0241 T23: -0.0619 REMARK 3 L TENSOR REMARK 3 L11: 1.9923 L22: 5.6730 REMARK 3 L33: 0.1963 L12: -1.6900 REMARK 3 L13: 0.1829 L23: -0.7343 REMARK 3 S TENSOR REMARK 3 S11: -0.1569 S12: -0.2856 S13: 0.0387 REMARK 3 S21: 0.5352 S22: 0.2245 S23: 0.2048 REMARK 3 S31: -0.1424 S32: 0.1508 S33: -0.0593 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 280:283 OR RESSEQ REMARK 3 286:289 OR RESSEQ 291:293 OR RESSEQ 297: REMARK 3 304 OR RESSEQ 306:334 OR RESSEQ 341:359 REMARK 3 OR RESSEQ 375:397) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 280:283 OR RESSEQ REMARK 3 286:289 OR RESSEQ 291:293 OR RESSEQ 297: REMARK 3 304 OR RESSEQ 306:334 OR RESSEQ 341:359 REMARK 3 OR RESSEQ 375:397) REMARK 3 ATOM PAIRS NUMBER : 710 REMARK 3 RMSD : 0.138 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED COORDINATES WAS VALIDATED USING REMARK 3 MOLPROBITY. OUTPUT SCORES: BAD ROTAMERS, 9/220 (4.1%) REMARK 3 RAMACHANDRAN OUTLIERS, 0/263 (0.0%); RAMACHANDRAN FAVORED 256/ REMARK 3 263 (97.3%). REMARK 4 REMARK 4 2YMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 32.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: SEMET DERIVATIVE REFINED MODEL SOLVED BY MAD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.55 M NAH2PO4, 0.55 M KH2PO4, 0.1 M REMARK 280 TRIS, PH 5.05. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 80.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.41896 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.55333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 80.40000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.41896 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.55333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 80.40000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.41896 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.55333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 80.40000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 46.41896 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.55333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 80.40000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 46.41896 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.55333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 80.40000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 46.41896 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.55333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 92.83792 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 65.10667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 92.83792 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 65.10667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 92.83792 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 65.10667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 92.83792 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.10667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 92.83792 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 65.10667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 92.83792 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 65.10667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 264 REMARK 465 HIS A 400 REMARK 465 GLY A 401 REMARK 465 GLU A 402 REMARK 465 SER A 403 REMARK 465 THR A 404 REMARK 465 GLU A 405 REMARK 465 LEU A 406 REMARK 465 GLY A 407 REMARK 465 GLN A 408 REMARK 465 ILE A 409 REMARK 465 THR A 410 REMARK 465 HIS A 411 REMARK 465 SER A 412 REMARK 465 ASN A 413 REMARK 465 LYS A 414 REMARK 465 ALA A 415 REMARK 465 ASP A 416 REMARK 465 ILE A 417 REMARK 465 ASN A 418 REMARK 465 THR A 419 REMARK 465 ALA A 420 REMARK 465 GLU A 421 REMARK 465 ILE A 422 REMARK 465 ARG A 423 REMARK 465 SER A 424 REMARK 465 GLY B 264 REMARK 465 SER B 265 REMARK 465 GLY B 398 REMARK 465 ASP B 399 REMARK 465 HIS B 400 REMARK 465 GLY B 401 REMARK 465 GLU B 402 REMARK 465 SER B 403 REMARK 465 THR B 404 REMARK 465 GLU B 405 REMARK 465 LEU B 406 REMARK 465 GLY B 407 REMARK 465 GLN B 408 REMARK 465 ILE B 409 REMARK 465 THR B 410 REMARK 465 HIS B 411 REMARK 465 SER B 412 REMARK 465 ASN B 413 REMARK 465 LYS B 414 REMARK 465 ALA B 415 REMARK 465 ASP B 416 REMARK 465 ILE B 417 REMARK 465 ASN B 418 REMARK 465 THR B 419 REMARK 465 ALA B 420 REMARK 465 GLU B 421 REMARK 465 ILE B 422 REMARK 465 ARG B 423 REMARK 465 SER B 424 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 265 OG REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 PHE A 292 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 294 OG1 CG2 REMARK 470 ASP A 295 CG OD1 OD2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 GLN A 343 CG CD OE1 NE2 REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 GLN A 373 CG CD OE1 NE2 REMARK 470 ARG A 374 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 381 CG CD CE NZ REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 470 ASP A 399 CG OD1 OD2 REMARK 470 ILE B 266 CG1 CG2 CD1 REMARK 470 ASN B 305 CG OD1 ND2 REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 GLN B 319 CG CD OE1 NE2 REMARK 470 GLN B 343 CG CD OE1 NE2 REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 SER B 372 OG REMARK 470 GLN B 373 CG CD OE1 NE2 REMARK 470 ARG B 374 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 387 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 336 172.00 -57.27 REMARK 500 ASN B 338 0.84 -57.83 REMARK 500 ASN B 371 -163.01 -170.34 REMARK 500 GLN B 373 -59.95 -122.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUAL GS AT THE N-TERMINUS AFTER TAG REMOVAL. DBREF 2YMA A 266 424 UNP Q99220 OS9_YEAST 266 424 DBREF 2YMA B 266 424 UNP Q99220 OS9_YEAST 266 424 SEQADV 2YMA GLY A 264 UNP Q99220 EXPRESSION TAG SEQADV 2YMA SER A 265 UNP Q99220 EXPRESSION TAG SEQADV 2YMA GLY B 264 UNP Q99220 EXPRESSION TAG SEQADV 2YMA SER B 265 UNP Q99220 EXPRESSION TAG SEQRES 1 A 161 GLY SER ILE GLY SER ASN SER ILE ASP LEU ILE THR LYS SEQRES 2 A 161 TYR GLU PRO ILE PHE LEU GLY SER GLY ILE TYR PHE LEU SEQRES 3 A 161 ARG PRO PHE ASN THR ASP GLU ARG ASP LYS LEU MET VAL SEQRES 4 A 161 THR ASP ASN ALA MET SER ASN TRP ASP GLU ILE THR GLU SEQRES 5 A 161 THR TYR TYR GLN LYS PHE GLY ASN ALA ILE ASN LYS MET SEQRES 6 A 161 LEU SER LEU ARG LEU VAL SER LEU PRO ASN GLY HIS ILE SEQRES 7 A 161 LEU GLN PRO GLY ASP SER CYS VAL TRP LEU ALA GLU VAL SEQRES 8 A 161 VAL ASP MET LYS ASP ARG PHE GLN THR THR LEU SER LEU SEQRES 9 A 161 ASN ILE LEU ASN SER GLN ARG ALA GLU ILE PHE PHE ASN SEQRES 10 A 161 LYS THR PHE THR PHE ASN GLU ASP ASN GLY ASN PHE LEU SEQRES 11 A 161 SER TYR LYS ILE GLY ASP HIS GLY GLU SER THR GLU LEU SEQRES 12 A 161 GLY GLN ILE THR HIS SER ASN LYS ALA ASP ILE ASN THR SEQRES 13 A 161 ALA GLU ILE ARG SER SEQRES 1 B 161 GLY SER ILE GLY SER ASN SER ILE ASP LEU ILE THR LYS SEQRES 2 B 161 TYR GLU PRO ILE PHE LEU GLY SER GLY ILE TYR PHE LEU SEQRES 3 B 161 ARG PRO PHE ASN THR ASP GLU ARG ASP LYS LEU MET VAL SEQRES 4 B 161 THR ASP ASN ALA MET SER ASN TRP ASP GLU ILE THR GLU SEQRES 5 B 161 THR TYR TYR GLN LYS PHE GLY ASN ALA ILE ASN LYS MET SEQRES 6 B 161 LEU SER LEU ARG LEU VAL SER LEU PRO ASN GLY HIS ILE SEQRES 7 B 161 LEU GLN PRO GLY ASP SER CYS VAL TRP LEU ALA GLU VAL SEQRES 8 B 161 VAL ASP MET LYS ASP ARG PHE GLN THR THR LEU SER LEU SEQRES 9 B 161 ASN ILE LEU ASN SER GLN ARG ALA GLU ILE PHE PHE ASN SEQRES 10 B 161 LYS THR PHE THR PHE ASN GLU ASP ASN GLY ASN PHE LEU SEQRES 11 B 161 SER TYR LYS ILE GLY ASP HIS GLY GLU SER THR GLU LEU SEQRES 12 B 161 GLY GLN ILE THR HIS SER ASN LYS ALA ASP ILE ASN THR SEQRES 13 B 161 ALA GLU ILE ARG SER FORMUL 3 HOH *50(H2 O) HELIX 1 1 ASP A 304 SER A 308 5 5 HELIX 2 2 THR A 314 LEU A 331 1 18 HELIX 3 3 SER B 270 LYS B 276 1 7 HELIX 4 4 ASP B 304 SER B 308 5 5 HELIX 5 5 THR B 314 LEU B 331 1 18 SHEET 1 AA 6 TYR A 277 GLY A 283 0 SHEET 2 AA 6 ILE A 286 PRO A 291 -1 O ILE A 286 N LEU A 282 SHEET 3 AA 6 LYS A 299 VAL A 302 -1 O LYS A 299 N LEU A 289 SHEET 4 AA 6 SER A 347 VAL A 355 1 O GLU A 353 N LEU A 300 SHEET 5 AA 6 PHE A 361 ILE A 369 -1 N GLN A 362 O VAL A 354 SHEET 6 AA 6 ALA A 375 ASN A 380 -1 O GLU A 376 N ASN A 368 SHEET 1 AB 5 TYR A 277 GLY A 283 0 SHEET 2 AB 5 ILE A 286 PRO A 291 -1 O ILE A 286 N LEU A 282 SHEET 3 AB 5 LYS A 299 VAL A 302 -1 O LYS A 299 N LEU A 289 SHEET 4 AB 5 SER A 347 VAL A 355 1 O GLU A 353 N LEU A 300 SHEET 5 AB 5 PHE A 392 LYS A 396 1 N LEU A 393 O VAL A 349 SHEET 1 BA 6 TYR B 277 GLY B 283 0 SHEET 2 BA 6 ILE B 286 PRO B 291 -1 O ILE B 286 N LEU B 282 SHEET 3 BA 6 LYS B 299 VAL B 302 -1 O LYS B 299 N LEU B 289 SHEET 4 BA 6 SER B 347 VAL B 355 1 O GLU B 353 N LEU B 300 SHEET 5 BA 6 PHE B 361 ILE B 369 -1 N GLN B 362 O VAL B 354 SHEET 6 BA 6 ALA B 375 ASN B 380 -1 O GLU B 376 N ASN B 368 SHEET 1 BB 5 TYR B 277 GLY B 283 0 SHEET 2 BB 5 ILE B 286 PRO B 291 -1 O ILE B 286 N LEU B 282 SHEET 3 BB 5 LYS B 299 VAL B 302 -1 O LYS B 299 N LEU B 289 SHEET 4 BB 5 SER B 347 VAL B 355 1 O GLU B 353 N LEU B 300 SHEET 5 BB 5 PHE B 392 LYS B 396 1 N LEU B 393 O VAL B 349 CRYST1 160.800 160.800 97.660 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006219 0.003590 0.000000 0.00000 SCALE2 0.000000 0.007181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010240 0.00000 MTRIX1 1 -0.782286 0.018025 -0.622659 -13.21360 1 MTRIX2 1 0.045100 -0.995319 -0.085474 55.16570 1 MTRIX3 1 -0.621285 -0.094947 0.777811 -2.10779 1