HEADER TRANSFERASE 24-OCT-12 2YOJ TITLE HCV NS5B POLYMERASE COMPLEXED WITH PYRIDONYLINDOLE COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NS5B, RESIDUES 2420-2989; COMPND 5 SYNONYM: NS5B, P68; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR K.X.CHEN,S.VENKATRAMAN,G.N.ANILKUMAR,Q.ZENG,C.A.LESBURG,B.VIBULBHAN, AUTHOR 2 W.YANG,F.VELAZQUEZ,T.-Y.CHAN,F.BENNETT,M.SANNIGRAHI,Y.JIANG, AUTHOR 3 J.S.DUCA,P.PINTO,S.GAVALAS,Y.HUANG,W.WU,O.SELYUTIN,S.AGRAWAL,B.FELD, AUTHOR 4 H.-C.HUANG,C.LI,K.-C.CHENG,N.-Y.SHIH,J.A.KOZLOWSKI,S.B.ROSENBLUM, AUTHOR 5 F.G.NJOROGE REVDAT 4 08-MAY-24 2YOJ 1 REMARK REVDAT 3 23-AUG-17 2YOJ 1 REMARK REVDAT 2 18-JUN-14 2YOJ 1 JRNL REVDAT 1 09-OCT-13 2YOJ 0 JRNL AUTH K.X.CHEN,S.VENKATRAMAN,G.N.ANILKUMAR,Q.ZENG,C.A.LESBURG, JRNL AUTH 2 B.VIBULBHAN,F.VELAZQUEZ,T.-Y.CHAN,F.BENNETT,Y.JIANG,P.PINTO, JRNL AUTH 3 Y.HUANG,O.SELYUTIN,S.AGRAWAL,H.-C.HUANG,C.LI,K.-C.CHENG, JRNL AUTH 4 N.-Y.SHIH,J.A.KOZLOWSKI,S.B.ROSENBLUM,F.G.NJOROGE JRNL TITL DISCOVERY OF SCH 900188: A POTENT HEPATITIS C VIRUS NS5B JRNL TITL 2 POLYMERASE INHIBITOR PRODRUG AS A DEVELOPMENT CANDIDATE JRNL REF ACS MED.CHEM.LETT. V. 5 244 2014 JRNL REFN ISSN 1948-5875 JRNL PMID 24900812 JRNL DOI 10.1021/ML400192W REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 123931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6195 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.58 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 8791 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2391 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8337 REMARK 3 BIN R VALUE (WORKING SET) : 0.2375 REMARK 3 BIN FREE R VALUE : 0.2707 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.16 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 454 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 1573 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.07090 REMARK 3 B22 (A**2) : -2.26010 REMARK 3 B33 (A**2) : 5.33100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.196 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.123 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.113 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.112 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.108 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 9072 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12334 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3112 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 202 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1489 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 9072 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1200 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 12195 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.42 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.57 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : BIMORPH REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125012 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14.0 %W/V PEG 3350, 100.0 MM DI-SODIUM REMARK 280 CITRATE PH 5.9 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.13550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.27650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.11350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.27650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.13550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.11350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 PRO A 569 REMARK 465 ARG A 570 REMARK 465 GLU A 571 REMARK 465 ASN A 572 REMARK 465 LEU A 573 REMARK 465 TYR A 574 REMARK 465 PHE A 575 REMARK 465 GLN A 576 REMARK 465 GLY A 577 REMARK 465 LEU A 578 REMARK 465 GLU A 579 REMARK 465 HIS A 580 REMARK 465 HIS A 581 REMARK 465 HIS A 582 REMARK 465 HIS A 583 REMARK 465 HIS A 584 REMARK 465 HIS A 585 REMARK 465 PRO B 149 REMARK 465 GLU B 150 REMARK 465 LYS B 151 REMARK 465 GLY B 152 REMARK 465 GLY B 153 REMARK 465 LEU B 564 REMARK 465 SER B 565 REMARK 465 ARG B 566 REMARK 465 ALA B 567 REMARK 465 ARG B 568 REMARK 465 PRO B 569 REMARK 465 ARG B 570 REMARK 465 GLU B 571 REMARK 465 ASN B 572 REMARK 465 LEU B 573 REMARK 465 TYR B 574 REMARK 465 PHE B 575 REMARK 465 GLN B 576 REMARK 465 GLY B 577 REMARK 465 LEU B 578 REMARK 465 GLU B 579 REMARK 465 HIS B 580 REMARK 465 HIS B 581 REMARK 465 HIS B 582 REMARK 465 HIS B 583 REMARK 465 HIS B 584 REMARK 465 HIS B 585 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 101 30.30 -98.88 REMARK 500 LEU A 260 -57.79 -133.69 REMARK 500 ALA A 348 59.43 -147.68 REMARK 500 ILE A 424 -64.17 -101.40 REMARK 500 LEU B 260 -54.85 -126.77 REMARK 500 SER B 347 50.94 70.07 REMARK 500 SER B 367 19.53 54.35 REMARK 500 ILE B 424 -60.47 -96.95 REMARK 500 THR B 532 80.54 79.94 REMARK 500 LYS B 535 -76.92 -62.97 REMARK 500 LEU B 536 90.51 75.91 REMARK 500 ALA B 541 1.65 -69.84 REMARK 500 HIS B 562 -141.78 -115.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2074 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A2114 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH A2156 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A2174 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A2244 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A2289 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A2447 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A2449 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A2873 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH A2874 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B2063 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B2069 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B2128 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B2234 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B2359 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B2360 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B2695 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B2696 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B2701 DISTANCE = 7.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8Y6 A 1569 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8Y6 B 1564 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1570 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1571 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1565 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1566 DBREF 2YOJ A 1 570 UNP O92972 POLG_HCVJ4 2420 2989 DBREF 2YOJ B 1 570 UNP O92972 POLG_HCVJ4 2420 2989 SEQADV 2YOJ GLU A 571 UNP O92972 EXPRESSION TAG SEQADV 2YOJ ASN A 572 UNP O92972 EXPRESSION TAG SEQADV 2YOJ LEU A 573 UNP O92972 EXPRESSION TAG SEQADV 2YOJ TYR A 574 UNP O92972 EXPRESSION TAG SEQADV 2YOJ PHE A 575 UNP O92972 EXPRESSION TAG SEQADV 2YOJ GLN A 576 UNP O92972 EXPRESSION TAG SEQADV 2YOJ GLY A 577 UNP O92972 EXPRESSION TAG SEQADV 2YOJ LEU A 578 UNP O92972 EXPRESSION TAG SEQADV 2YOJ GLU A 579 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS A 580 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS A 581 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS A 582 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS A 583 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS A 584 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS A 585 UNP O92972 EXPRESSION TAG SEQADV 2YOJ GLY A 440 UNP O92972 GLU 2859 CONFLICT SEQADV 2YOJ ILE A 520 UNP O92972 THR 2939 CONFLICT SEQADV 2YOJ GLU B 571 UNP O92972 EXPRESSION TAG SEQADV 2YOJ ASN B 572 UNP O92972 EXPRESSION TAG SEQADV 2YOJ LEU B 573 UNP O92972 EXPRESSION TAG SEQADV 2YOJ TYR B 574 UNP O92972 EXPRESSION TAG SEQADV 2YOJ PHE B 575 UNP O92972 EXPRESSION TAG SEQADV 2YOJ GLN B 576 UNP O92972 EXPRESSION TAG SEQADV 2YOJ GLY B 577 UNP O92972 EXPRESSION TAG SEQADV 2YOJ LEU B 578 UNP O92972 EXPRESSION TAG SEQADV 2YOJ GLU B 579 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS B 580 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS B 581 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS B 582 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS B 583 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS B 584 UNP O92972 EXPRESSION TAG SEQADV 2YOJ HIS B 585 UNP O92972 EXPRESSION TAG SEQADV 2YOJ GLY B 440 UNP O92972 GLU 2859 CONFLICT SEQADV 2YOJ ILE B 520 UNP O92972 THR 2939 CONFLICT SEQRES 1 A 585 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 A 585 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN PRO LEU SEQRES 3 A 585 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 A 585 THR THR SER ARG SER ALA SER LEU ARG GLN LYS LYS VAL SEQRES 5 A 585 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 A 585 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 A 585 LYS ALA LYS LEU LEU SER ILE GLU GLU ALA CYS LYS LEU SEQRES 8 A 585 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 A 585 ALA LYS ASP VAL ARG ASN LEU SER SER ARG ALA VAL ASN SEQRES 10 A 585 HIS ILE ARG SER VAL TRP GLU ASP LEU LEU GLU ASP THR SEQRES 11 A 585 GLU THR PRO ILE ASP THR THR ILE MET ALA LYS SER GLU SEQRES 12 A 585 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 A 585 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 A 585 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 A 585 PRO GLN ALA VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 A 585 SER PRO LYS GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 A 585 LYS SER LYS LYS CYS PRO MET GLY PHE SER TYR ASP THR SEQRES 18 A 585 ARG CYS PHE ASP SER THR VAL THR GLU SER ASP ILE ARG SEQRES 19 A 585 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 A 585 GLU ALA ARG GLN ALA ILE ARG SER LEU THR GLU ARG LEU SEQRES 21 A 585 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 A 585 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 A 585 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 A 585 THR ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 A 585 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 A 585 SER ALA GLY THR GLN GLU ASP ALA ALA ALA LEU ARG ALA SEQRES 27 A 585 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 A 585 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 A 585 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 A 585 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 A 585 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 A 585 PRO ILE ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 A 585 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 A 585 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLY LYS ALA SEQRES 35 A 585 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 A 585 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 A 585 LEU SER ALA PHE THR LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 A 585 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 A 585 PRO PRO LEU ARG THR TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 A 585 ARG ALA LYS LEU LEU SER GLN GLY GLY ARG ALA ALA ILE SEQRES 41 A 585 CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL ARG THR LYS SEQRES 42 A 585 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 A 585 LEU SER GLY TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 A 585 ILE TYR HIS SER LEU SER ARG ALA ARG PRO ARG GLU ASN SEQRES 45 A 585 LEU TYR PHE GLN GLY LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 585 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 B 585 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN PRO LEU SEQRES 3 B 585 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 B 585 THR THR SER ARG SER ALA SER LEU ARG GLN LYS LYS VAL SEQRES 5 B 585 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 B 585 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 B 585 LYS ALA LYS LEU LEU SER ILE GLU GLU ALA CYS LYS LEU SEQRES 8 B 585 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 B 585 ALA LYS ASP VAL ARG ASN LEU SER SER ARG ALA VAL ASN SEQRES 10 B 585 HIS ILE ARG SER VAL TRP GLU ASP LEU LEU GLU ASP THR SEQRES 11 B 585 GLU THR PRO ILE ASP THR THR ILE MET ALA LYS SER GLU SEQRES 12 B 585 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 B 585 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 B 585 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 B 585 PRO GLN ALA VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 B 585 SER PRO LYS GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 B 585 LYS SER LYS LYS CYS PRO MET GLY PHE SER TYR ASP THR SEQRES 18 B 585 ARG CYS PHE ASP SER THR VAL THR GLU SER ASP ILE ARG SEQRES 19 B 585 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 B 585 GLU ALA ARG GLN ALA ILE ARG SER LEU THR GLU ARG LEU SEQRES 21 B 585 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 B 585 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 B 585 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 B 585 THR ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 B 585 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 B 585 SER ALA GLY THR GLN GLU ASP ALA ALA ALA LEU ARG ALA SEQRES 27 B 585 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 B 585 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 B 585 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 B 585 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 B 585 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 B 585 PRO ILE ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 B 585 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 B 585 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLY LYS ALA SEQRES 35 B 585 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 B 585 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 B 585 LEU SER ALA PHE THR LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 B 585 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 B 585 PRO PRO LEU ARG THR TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 B 585 ARG ALA LYS LEU LEU SER GLN GLY GLY ARG ALA ALA ILE SEQRES 41 B 585 CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL ARG THR LYS SEQRES 42 B 585 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 B 585 LEU SER GLY TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 B 585 ILE TYR HIS SER LEU SER ARG ALA ARG PRO ARG GLU ASN SEQRES 45 B 585 LEU TYR PHE GLN GLY LEU GLU HIS HIS HIS HIS HIS HIS HET 8Y6 A1569 36 HET PO4 A1570 5 HET PO4 A1571 5 HET 8Y6 B1564 36 HET PO4 B1565 5 HET PO4 B1566 5 HETNAM 8Y6 4-FLUORANYL-6-[(7-FLUORANYL-4-OXIDANYLIDENE-3H- HETNAM 2 8Y6 QUINAZOLIN-6-YL)METHYL]-8-(2-OXIDANYLIDENE-1H-PYRIDIN- HETNAM 3 8Y6 3-YL)FURO[2,3-E]INDOLE-7-CARBOXYLIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 8Y6 2(C25 H14 F2 N4 O5) FORMUL 4 PO4 4(O4 P 3-) FORMUL 9 HOH *1573(H2 O) HELIX 1 1 ASN A 24 LEU A 31 1 8 HELIX 2 2 HIS A 33 ASN A 35 5 3 HELIX 3 3 THR A 41 ARG A 43 5 3 HELIX 4 4 SER A 44 THR A 53 1 10 HELIX 5 5 ASP A 61 SER A 76 1 16 HELIX 6 6 SER A 84 LEU A 91 1 8 HELIX 7 7 GLY A 104 ASN A 110 1 7 HELIX 8 8 SER A 112 ASP A 129 1 18 HELIX 9 9 ASP A 164 GLY A 188 1 25 HELIX 10 10 GLY A 192 TYR A 195 5 4 HELIX 11 11 SER A 196 SER A 210 1 15 HELIX 12 12 CYS A 223 VAL A 228 1 6 HELIX 13 13 THR A 229 GLN A 241 1 13 HELIX 14 14 ALA A 246 LEU A 260 1 15 HELIX 15 15 THR A 286 ALA A 306 1 21 HELIX 16 16 GLY A 328 TYR A 346 1 19 HELIX 17 17 ASP A 359 ILE A 363 5 5 HELIX 18 18 PRO A 388 ARG A 401 1 14 HELIX 19 19 ASN A 406 TYR A 415 1 10 HELIX 20 20 THR A 418 ILE A 424 1 7 HELIX 21 21 ILE A 424 GLN A 436 1 13 HELIX 22 22 GLU A 455 LEU A 457 5 3 HELIX 23 23 ASP A 458 GLY A 468 1 11 HELIX 24 24 LEU A 469 THR A 473 5 5 HELIX 25 25 SER A 478 GLY A 493 1 16 HELIX 26 26 PRO A 496 GLY A 515 1 20 HELIX 27 27 GLY A 515 PHE A 526 1 12 HELIX 28 28 ASN A 527 VAL A 530 5 4 HELIX 29 29 ILE A 539 LEU A 545 1 7 HELIX 30 30 HIS B 33 ASN B 35 5 3 HELIX 31 31 THR B 41 ARG B 43 5 3 HELIX 32 32 SER B 44 THR B 53 1 10 HELIX 33 33 ASP B 61 SER B 76 1 16 HELIX 34 34 SER B 84 LEU B 91 1 8 HELIX 35 35 GLY B 104 ASN B 110 1 7 HELIX 36 36 SER B 112 ASP B 129 1 18 HELIX 37 37 ASP B 164 GLY B 188 1 25 HELIX 38 38 GLY B 192 TYR B 195 5 4 HELIX 39 39 SER B 196 SER B 210 1 15 HELIX 40 40 CYS B 223 VAL B 228 1 6 HELIX 41 41 THR B 229 GLN B 241 1 13 HELIX 42 42 ALA B 246 LEU B 260 1 15 HELIX 43 43 THR B 286 LYS B 307 1 22 HELIX 44 44 GLY B 328 TYR B 346 1 19 HELIX 45 45 ASP B 359 ILE B 363 5 5 HELIX 46 46 PRO B 388 ARG B 401 1 14 HELIX 47 47 ASN B 406 TYR B 415 1 10 HELIX 48 48 THR B 418 ILE B 424 1 7 HELIX 49 49 ILE B 424 GLU B 437 1 14 HELIX 50 50 GLU B 455 LEU B 457 5 3 HELIX 51 51 ASP B 458 GLY B 468 1 11 HELIX 52 52 LEU B 469 THR B 473 5 5 HELIX 53 53 SER B 478 GLY B 493 1 16 HELIX 54 54 PRO B 496 GLY B 515 1 20 HELIX 55 55 GLY B 515 PHE B 526 1 12 HELIX 56 56 ASN B 527 VAL B 530 5 4 HELIX 57 57 ILE B 539 SER B 543 5 5 SHEET 1 AA 5 TYR A 4 TRP A 6 0 SHEET 2 AA 5 ASN A 273 ARG A 277 -1 O TYR A 276 N THR A 5 SHEET 3 AA 5 GLY A 264 THR A 267 -1 O GLY A 264 N ARG A 277 SHEET 4 AA 5 THR A 136 ALA A 140 1 O THR A 136 N THR A 267 SHEET 5 AA 5 LEU A 159 PHE A 162 -1 O ILE A 160 N MET A 139 SHEET 1 AB 2 VAL A 37 ALA A 39 0 SHEET 2 AB 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AC 3 PRO A 214 TYR A 219 0 SHEET 2 AC 3 ASP A 319 GLU A 325 -1 O LEU A 320 N TYR A 219 SHEET 3 AC 3 GLN A 309 ASN A 316 -1 O GLN A 309 N GLU A 325 SHEET 1 AD 2 ASN A 369 HIS A 374 0 SHEET 2 AD 2 ARG A 380 THR A 385 -1 O VAL A 381 N ALA A 373 SHEET 1 AE 2 LEU A 443 ILE A 447 0 SHEET 2 AE 2 ALA A 450 ILE A 454 -1 O ALA A 450 N ILE A 447 SHEET 1 BA 5 TYR B 4 TRP B 6 0 SHEET 2 BA 5 ASN B 273 ARG B 277 -1 O TYR B 276 N THR B 5 SHEET 3 BA 5 GLY B 264 THR B 267 -1 O GLY B 264 N ARG B 277 SHEET 4 BA 5 THR B 136 ALA B 140 1 O THR B 136 N THR B 267 SHEET 5 BA 5 LEU B 159 PHE B 162 -1 O ILE B 160 N MET B 139 SHEET 1 BB 2 VAL B 37 ALA B 39 0 SHEET 2 BB 2 VAL B 144 CYS B 146 -1 O PHE B 145 N TYR B 38 SHEET 1 BC 3 PRO B 214 ASP B 220 0 SHEET 2 BC 3 ASP B 319 GLU B 325 -1 O LEU B 320 N TYR B 219 SHEET 3 BC 3 GLN B 309 ASN B 316 -1 O GLN B 309 N GLU B 325 SHEET 1 BD 2 ASN B 369 HIS B 374 0 SHEET 2 BD 2 ARG B 380 THR B 385 -1 O VAL B 381 N ALA B 373 SHEET 1 BE 2 LEU B 443 ILE B 447 0 SHEET 2 BE 2 ALA B 450 ILE B 454 -1 O ALA B 450 N ILE B 447 SITE 1 AC1 19 ARG A 200 ASN A 316 CYS A 366 SER A 367 SITE 2 AC1 19 GLY A 410 ASN A 411 MET A 414 TYR A 415 SITE 3 AC1 19 GLN A 446 ILE A 447 TYR A 448 PO4 A1570 SITE 4 AC1 19 HOH A2617 HOH A2679 HOH A2705 HOH A2739 SITE 5 AC1 19 HOH A2854 HOH A2856 HOH A2867 SITE 1 AC2 19 ARG B 200 ASN B 316 CYS B 366 SER B 367 SITE 2 AC2 19 LEU B 384 GLY B 410 ASN B 411 MET B 414 SITE 3 AC2 19 TYR B 415 GLN B 446 ILE B 447 TYR B 448 SITE 4 AC2 19 PO4 B1565 HOH B2513 HOH B2517 HOH B2580 SITE 5 AC2 19 HOH B2624 HOH B2688 HOH B2690 SITE 1 AC3 6 SER A 367 ARG A 386 8Y6 A1569 HOH A2409 SITE 2 AC3 6 HOH A2684 HOH A2688 SITE 1 AC4 10 ARG A 505 VAL A 530 ARG A 531 THR A 532 SITE 2 AC4 10 HOH A2799 HOH A2800 HOH A2833 HOH A2870 SITE 3 AC4 10 HOH A2871 HOH A2872 SITE 1 AC5 7 SER B 367 ARG B 386 8Y6 B1564 HOH B2337 SITE 2 AC5 7 HOH B2583 HOH B2586 HOH B2691 SITE 1 AC6 8 PRO A 22 ARG A 401 HOH A2083 HOH A2086 SITE 2 AC6 8 ARG B 114 HOH B2259 HOH B2692 HOH B2693 CRYST1 90.271 106.227 134.553 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011078 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007432 0.00000 MTRIX1 1 -0.904052 -0.318902 0.284589 47.33900 1 MTRIX2 1 -0.278312 -0.066127 -0.958212 53.12300 1 MTRIX3 1 0.324394 -0.945478 -0.028972 37.22900 1