HEADER HYDROLASE 29-OCT-12 2YOZ TITLE CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- TITLE 2 PHOSPHODIESTERASE, CRYSTALLIZED WITH 2'-AMPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CATALYTIC DOMAIN, RESIDUES 159-378; COMPND 5 SYNONYM: CNP, CNPASE; COMPND 6 EC: 3.1.4.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTH 27 KEYWDS HYDROLASE, MYELIN, NERVOUS SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.MYLLYKOSKI,A.RAASAKKA,M.LEHTIMAKI,H.HAN,P.KURSULA REVDAT 7 20-DEC-23 2YOZ 1 REMARK REVDAT 6 17-JUL-19 2YOZ 1 REMARK REVDAT 5 10-JUL-19 2YOZ 1 REMARK REVDAT 4 15-MAY-19 2YOZ 1 REMARK ATOM REVDAT 3 13-NOV-13 2YOZ 1 JRNL REVDAT 2 17-JUL-13 2YOZ 1 JRNL REVDAT 1 10-JUL-13 2YOZ 0 JRNL AUTH M.MYLLYKOSKI,A.RAASAKKA,M.LEHTIMAKI,H.HAN,I.KURSULA, JRNL AUTH 2 P.KURSULA JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE REACTION CYCLE OF JRNL TITL 2 2',3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE, A UNIQUE JRNL TITL 3 MEMBER OF THE 2H PHOSPHOESTERASE FAMILY JRNL REF J.MOL.BIOL. V. 425 4307 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23831225 JRNL DOI 10.1016/J.JMB.2013.06.012 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.9991 - 3.3272 0.99 2612 137 0.1548 0.1709 REMARK 3 2 3.3272 - 2.6441 1.00 2583 136 0.1712 0.2638 REMARK 3 3 2.6441 - 2.3108 1.00 2585 136 0.2092 0.2688 REMARK 3 4 2.3108 - 2.0999 0.99 2549 134 0.2210 0.3067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1737 REMARK 3 ANGLE : 0.817 2331 REMARK 3 CHIRALITY : 0.046 248 REMARK 3 PLANARITY : 0.003 293 REMARK 3 DIHEDRAL : 14.293 639 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 161 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6093 13.4895 80.2491 REMARK 3 T TENSOR REMARK 3 T11: 0.2841 T22: 0.2251 REMARK 3 T33: 0.2564 T12: 0.0265 REMARK 3 T13: -0.1114 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 3.2792 L22: 1.2273 REMARK 3 L33: 6.2814 L12: 0.6493 REMARK 3 L13: 2.1526 L23: -0.5920 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: -0.4499 S13: -0.1817 REMARK 3 S21: 0.2775 S22: 0.0524 S23: -0.6072 REMARK 3 S31: 0.3890 S32: 0.5683 S33: -0.1224 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 175 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7786 9.2279 64.4478 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.2976 REMARK 3 T33: 0.2744 T12: 0.0146 REMARK 3 T13: -0.0072 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 4.6084 L22: 6.3072 REMARK 3 L33: 3.6887 L12: 4.9380 REMARK 3 L13: 3.8246 L23: 4.1839 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: -0.2346 S13: 0.2291 REMARK 3 S21: -0.7098 S22: -0.1901 S23: -0.0369 REMARK 3 S31: -0.4956 S32: -0.2874 S33: 0.2826 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 195 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1044 -8.3727 57.4161 REMARK 3 T TENSOR REMARK 3 T11: 0.2939 T22: 0.3568 REMARK 3 T33: 0.2805 T12: -0.0549 REMARK 3 T13: 0.0170 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.5315 L22: 5.1939 REMARK 3 L33: 6.0390 L12: -0.3788 REMARK 3 L13: 0.6411 L23: 5.0390 REMARK 3 S TENSOR REMARK 3 S11: -0.2235 S12: -0.1395 S13: -0.2678 REMARK 3 S21: 0.8608 S22: -0.0970 S23: 0.7611 REMARK 3 S31: 0.9510 S32: -0.6508 S33: 0.1853 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 221 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9203 7.5593 75.7989 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.1904 REMARK 3 T33: 0.1863 T12: 0.0340 REMARK 3 T13: 0.0481 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.6566 L22: 4.6631 REMARK 3 L33: 2.5618 L12: 1.3509 REMARK 3 L13: 0.6956 L23: 1.2382 REMARK 3 S TENSOR REMARK 3 S11: -0.2441 S12: -0.1775 S13: -0.1909 REMARK 3 S21: 0.3287 S22: 0.0568 S23: -0.1545 REMARK 3 S31: 0.1609 S32: -0.0976 S33: 0.0914 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 249 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4684 11.8375 64.8976 REMARK 3 T TENSOR REMARK 3 T11: 0.2108 T22: 0.2440 REMARK 3 T33: 0.1947 T12: -0.0309 REMARK 3 T13: 0.0397 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.5984 L22: 2.9605 REMARK 3 L33: 2.9639 L12: 0.9813 REMARK 3 L13: 0.6176 L23: 1.6064 REMARK 3 S TENSOR REMARK 3 S11: -0.0712 S12: 0.1239 S13: -0.0770 REMARK 3 S21: -0.2261 S22: 0.1455 S23: -0.3135 REMARK 3 S31: -0.2601 S32: 0.3570 S33: -0.1186 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 309 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5669 -0.1414 63.9483 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.2079 REMARK 3 T33: 0.2003 T12: -0.0081 REMARK 3 T13: -0.0203 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 5.6100 L22: 6.9101 REMARK 3 L33: 5.4789 L12: 0.0342 REMARK 3 L13: -2.9713 L23: -1.2572 REMARK 3 S TENSOR REMARK 3 S11: -0.2404 S12: 0.0008 S13: -0.2148 REMARK 3 S21: -0.1338 S22: -0.0324 S23: -0.4525 REMARK 3 S31: 0.5388 S32: 0.2088 S33: 0.3041 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 336 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4574 7.1804 56.8875 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.2927 REMARK 3 T33: 0.1616 T12: 0.0231 REMARK 3 T13: 0.0265 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 1.0407 L22: 2.8582 REMARK 3 L33: 2.8814 L12: 0.0456 REMARK 3 L13: 0.3288 L23: 1.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.1259 S12: 0.1572 S13: 0.0828 REMARK 3 S21: -0.6239 S22: 0.2019 S23: 0.1202 REMARK 3 S31: -0.3437 S32: 0.0478 S33: -0.0761 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE INCLUDED IN RIDING REMARK 3 POSITION. RESIDUES 158-160 AND 206-212 WERE EXCLUDED DUE TO REMARK 3 INSUFFICIENT ELECTRON DENSITY. REMARK 4 REMARK 4 2YOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.815000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XMI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 UM PROTEIN AND 10 MM 2, 3(SP) REMARK 280 -CYCLIC-AMPS MIXED IN 0.5 PLUS 0.5 DROPS WITH 30% PEG4000 AND 50 REMARK 280 MM ACETATE (1:1 MIX OF PH 3 AND PH 5) IN 4C TEMP, PH 4, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.94000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 LEU A 160 REMARK 465 ILE A 206 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 ASP A 209 REMARK 465 GLU A 210 REMARK 465 PRO A 211 REMARK 465 LYS A 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2065 O HOH A 2066 2.14 REMARK 500 O HOH A 2063 O HOH A 2077 2.17 REMARK 500 O HOH A 2005 O HOH A 2006 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 221 59.07 -92.97 REMARK 500 THR A 233 -82.55 -96.52 REMARK 500 VAL A 321 -18.43 97.24 REMARK 500 THR A 374 -167.60 -163.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 1381 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OVE A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1386 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XMI RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2Y1P RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2Y3X RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH SULFATE REMARK 900 RELATED ID: 2YDB RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC NADP REMARK 900 RELATED ID: 2YDC RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH GTP REMARK 900 RELATED ID: 2YDD RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC AMP REMARK 900 RELATED ID: 2YP0 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, CRYSTALLIZED WITH 2'-AMPS REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL GLYCINE REMAINS FROM TEV-CLEAVAGE OF EXPRESSION REMARK 999 TAG. RESIDUE NUMBERING IS ACCORDING TO CNPASE ISOFORM 1 ( REMARK 999 P16330-2). DBREF 2YOZ A 159 378 UNP P16330 CN37_MOUSE 159 378 SEQADV 2YOZ GLY A 158 UNP P16330 EXPRESSION TAG SEQRES 1 A 221 GLY GLY LEU GLU LYS ASP PHE LEU PRO LEU TYR PHE GLY SEQRES 2 A 221 TRP PHE LEU THR LYS LYS SER SER GLU THR LEU ARG LYS SEQRES 3 A 221 ALA GLY GLN VAL PHE LEU GLU GLU LEU GLY ASN HIS LYS SEQRES 4 A 221 ALA PHE LYS LYS GLU LEU ARG HIS PHE ILE SER GLY ASP SEQRES 5 A 221 GLU PRO LYS GLU LYS LEU GLU LEU VAL SER TYR PHE GLY SEQRES 6 A 221 LYS ARG PRO PRO GLY VAL LEU HIS CYS THR THR LYS PHE SEQRES 7 A 221 CYS ASP TYR GLY LYS ALA ALA GLY ALA GLU GLU TYR ALA SEQRES 8 A 221 GLN GLN GLU VAL VAL LYS ARG SER TYR GLY LYS ALA PHE SEQRES 9 A 221 LYS LEU SER ILE SER ALA LEU PHE VAL THR PRO LYS THR SEQRES 10 A 221 ALA GLY ALA GLN VAL VAL LEU THR ASP GLN GLU LEU GLN SEQRES 11 A 221 LEU TRP PRO SER ASP LEU ASP LYS PRO SER ALA SER GLU SEQRES 12 A 221 GLY LEU PRO PRO GLY SER ARG ALA HIS VAL THR LEU GLY SEQRES 13 A 221 CYS ALA ALA ASP VAL GLN PRO VAL GLN THR GLY LEU ASP SEQRES 14 A 221 LEU LEU ASP ILE LEU GLN GLN VAL LYS GLY GLY SER GLN SEQRES 15 A 221 GLY GLU ALA VAL GLY GLU LEU PRO ARG GLY LYS LEU TYR SEQRES 16 A 221 SER LEU GLY LYS GLY ARG TRP MET LEU SER LEU THR LYS SEQRES 17 A 221 LYS MET GLU VAL LYS ALA ILE PHE THR GLY TYR TYR GLY HET OVE A1379 35 HET GOL A1380 14 HET 1PE A1381 32 HET ACT A1382 7 HET ACT A1383 7 HET ACT A1384 7 HET CL A1385 1 HET ACT A1386 7 HETNAM OVE 2'-O-(SULFIDOPHOSPHINATO)ADENOSINE HETNAM GOL GLYCEROL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETSYN OVE ADENOSINE-2'-MONOPHOSPHOROTHIOATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 FORMUL 2 OVE C10 H14 N5 O6 P S FORMUL 3 GOL C3 H8 O3 FORMUL 4 1PE C10 H22 O6 FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 8 CL CL 1- FORMUL 10 HOH *97(H2 O) HELIX 1 1 THR A 174 HIS A 195 1 22 HELIX 2 2 HIS A 195 ARG A 203 1 9 HELIX 3 3 GLU A 216 PHE A 221 1 6 HELIX 4 4 ASP A 237 LYS A 240 5 4 HELIX 5 5 GLY A 243 GLN A 249 1 7 HELIX 6 6 GLN A 250 SER A 256 1 7 HELIX 7 7 THR A 282 GLN A 287 1 6 HELIX 8 8 PRO A 296 GLY A 301 5 6 HELIX 9 9 VAL A 321 GLY A 337 1 17 SHEET 1 AA 5 HIS A 230 PHE A 235 0 SHEET 2 AA 5 TYR A 168 LEU A 173 -1 O PHE A 169 N THR A 233 SHEET 3 AA 5 ARG A 358 TYR A 376 -1 O ILE A 372 N PHE A 172 SHEET 4 AA 5 GLY A 349 GLY A 355 -1 O LYS A 350 N SER A 362 SHEET 5 AA 5 GLY A 344 LEU A 346 1 O GLY A 344 N LEU A 351 SHEET 1 AB 6 HIS A 230 PHE A 235 0 SHEET 2 AB 6 TYR A 168 LEU A 173 -1 O PHE A 169 N THR A 233 SHEET 3 AB 6 ARG A 358 TYR A 376 -1 O ILE A 372 N PHE A 172 SHEET 4 AB 6 LYS A 259 VAL A 270 -1 O LYS A 259 N PHE A 373 SHEET 5 AB 6 THR A 274 VAL A 280 -1 O GLY A 276 N PHE A 269 SHEET 6 AB 6 HIS A 309 CYS A 314 -1 O VAL A 310 N ALA A 277 SITE 1 AC1 12 TYR A 168 HIS A 230 THR A 232 PHE A 235 SITE 2 AC1 12 HIS A 309 THR A 311 PRO A 320 VAL A 321 SITE 3 AC1 12 THR A 323 HOH A2033 HOH A2071 HOH A2074 SITE 1 AC2 2 ARG A 348 LYS A 366 SITE 1 AC3 3 ALA A 197 LYS A 200 SER A 353 SITE 1 AC4 4 PHE A 198 THR A 271 PRO A 272 GLY A 357 SITE 1 AC5 4 LYS A 223 ARG A 224 PRO A 225 HOH A2073 SITE 1 AC6 1 LYS A 262 SITE 1 AC7 3 TRP A 289 SER A 297 GLY A 305 SITE 1 AC8 2 LYS A 370 HOH A2094 CRYST1 38.400 47.880 51.150 90.00 94.45 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026042 0.000000 0.002027 0.00000 SCALE2 0.000000 0.020886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019609 0.00000