HEADER HYDROLASE 30-OCT-12 2YPC TITLE CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- TITLE 2 PHOSPHODIESTERASE, WITH MUTATION H309S, CRYSTALLIZED WITH 2',3-(SP)- TITLE 3 CYCLIC-AMPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CATALYTIC DOMAIN, RESIDUES 159-378; COMPND 5 SYNONYM: CNP, CNPASE; COMPND 6 EC: 3.1.4.37; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PTH 27 KEYWDS HYDROLASE, MYELIN, NERVOUS SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.MYLLYKOSKI,A.RAASAKKA,M.LEHTIMAKI,H.HAN,P.KURSULA REVDAT 6 20-DEC-23 2YPC 1 REMARK ATOM REVDAT 5 07-MAR-18 2YPC 1 SOURCE REMARK REVDAT 4 15-JUL-15 2YPC 1 REMARK REVDAT 3 13-NOV-13 2YPC 1 JRNL REVDAT 2 17-JUL-13 2YPC 1 JRNL REVDAT 1 10-JUL-13 2YPC 0 JRNL AUTH M.MYLLYKOSKI,A.RAASAKKA,M.LEHTIMAKI,H.HAN,I.KURSULA, JRNL AUTH 2 P.KURSULA JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE REACTION CYCLE OF JRNL TITL 2 2',3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE, A UNIQUE JRNL TITL 3 MEMBER OF THE 2H PHOSPHOESTERASE FAMILY JRNL REF J.MOL.BIOL. V. 425 4307 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23831225 JRNL DOI 10.1016/J.JMB.2013.06.012 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 15832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1421 - 3.4412 0.99 2603 138 0.1619 0.2009 REMARK 3 2 3.4412 - 2.7316 0.99 2554 134 0.1650 0.2131 REMARK 3 3 2.7316 - 2.3864 0.99 2542 134 0.1698 0.2116 REMARK 3 4 2.3864 - 2.1682 0.99 2524 133 0.1563 0.2165 REMARK 3 5 2.1682 - 2.0128 0.99 2510 132 0.1615 0.2486 REMARK 3 6 2.0128 - 1.8941 0.90 2307 121 0.1853 0.2227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1756 REMARK 3 ANGLE : 1.030 2376 REMARK 3 CHIRALITY : 0.061 257 REMARK 3 PLANARITY : 0.005 301 REMARK 3 DIHEDRAL : 13.297 655 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 163 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9033 6.0772 28.3417 REMARK 3 T TENSOR REMARK 3 T11: 0.1574 T22: 0.1801 REMARK 3 T33: 0.1799 T12: 0.0569 REMARK 3 T13: 0.0017 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 2.5210 L22: 4.3478 REMARK 3 L33: 3.0298 L12: -0.8686 REMARK 3 L13: -0.3471 L23: -2.1463 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.3433 S13: 0.0857 REMARK 3 S21: 0.0348 S22: 0.0906 S23: -0.3432 REMARK 3 S31: 0.1665 S32: 0.1720 S33: 0.0292 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 175 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6770 2.4257 14.4725 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.2429 REMARK 3 T33: 0.2371 T12: 0.0196 REMARK 3 T13: 0.0038 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 2.2623 L22: 5.4404 REMARK 3 L33: 3.8124 L12: 1.2984 REMARK 3 L13: 0.9676 L23: 1.9094 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.0635 S13: 0.4354 REMARK 3 S21: 0.1628 S22: 0.0824 S23: 0.5375 REMARK 3 S31: -0.0230 S32: -0.4444 S33: 0.0329 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 194 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2184 -18.2238 7.7407 REMARK 3 T TENSOR REMARK 3 T11: 0.4676 T22: 0.3803 REMARK 3 T33: 0.3679 T12: -0.1093 REMARK 3 T13: -0.0215 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.8583 L22: 2.6094 REMARK 3 L33: 4.6935 L12: -0.4035 REMARK 3 L13: 0.5858 L23: -0.5923 REMARK 3 S TENSOR REMARK 3 S11: -0.2019 S12: 0.3922 S13: -0.7848 REMARK 3 S21: -0.5034 S22: 0.3243 S23: 0.3474 REMARK 3 S31: 1.1220 S32: -0.7374 S33: -0.1794 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 217 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6292 -2.6715 24.0706 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.1768 REMARK 3 T33: 0.1824 T12: 0.0133 REMARK 3 T13: 0.0446 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.5860 L22: 1.2921 REMARK 3 L33: 0.7334 L12: 0.8110 REMARK 3 L13: 0.2375 L23: -0.0374 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: -0.0280 S13: 0.1006 REMARK 3 S21: 0.0753 S22: 0.0110 S23: 0.1220 REMARK 3 S31: 0.2089 S32: -0.1024 S33: -0.0078 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 244 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1810 7.0360 17.3765 REMARK 3 T TENSOR REMARK 3 T11: 0.1443 T22: 0.1536 REMARK 3 T33: 0.1469 T12: -0.0263 REMARK 3 T13: 0.0208 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.1815 L22: 1.7484 REMARK 3 L33: 1.5856 L12: 0.2075 REMARK 3 L13: 0.3563 L23: -0.1520 REMARK 3 S TENSOR REMARK 3 S11: -0.0925 S12: 0.0800 S13: 0.1194 REMARK 3 S21: -0.0038 S22: 0.0565 S23: -0.2046 REMARK 3 S31: -0.2121 S32: 0.1998 S33: 0.0235 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 289 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7966 -2.5343 17.0710 REMARK 3 T TENSOR REMARK 3 T11: 0.4390 T22: 0.4748 REMARK 3 T33: 0.5307 T12: 0.1812 REMARK 3 T13: 0.0310 T23: 0.0717 REMARK 3 L TENSOR REMARK 3 L11: 1.6000 L22: 3.4634 REMARK 3 L33: 1.0465 L12: 1.2765 REMARK 3 L13: -0.3434 L23: 1.2674 REMARK 3 S TENSOR REMARK 3 S11: -0.1979 S12: -0.2965 S13: -1.0582 REMARK 3 S21: 0.4612 S22: -0.0873 S23: -1.0232 REMARK 3 S31: 0.9516 S32: 0.9683 S33: -0.0125 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 300 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0899 -5.7393 14.4157 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.1659 REMARK 3 T33: 0.2296 T12: 0.0133 REMARK 3 T13: 0.0235 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.3324 L22: 2.5217 REMARK 3 L33: 1.9257 L12: 0.8127 REMARK 3 L13: -0.4357 L23: -0.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: -0.0056 S13: -0.3023 REMARK 3 S21: -0.1153 S22: 0.0639 S23: -0.5442 REMARK 3 S31: 0.2351 S32: 0.2593 S33: 0.0651 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 334 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8192 -4.5499 -1.4990 REMARK 3 T TENSOR REMARK 3 T11: 0.4249 T22: 0.3063 REMARK 3 T33: 0.1253 T12: -0.0971 REMARK 3 T13: -0.0335 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.7684 L22: 0.8192 REMARK 3 L33: 2.0377 L12: 0.1355 REMARK 3 L13: 1.1271 L23: 0.4550 REMARK 3 S TENSOR REMARK 3 S11: -0.1928 S12: 0.2297 S13: 0.0981 REMARK 3 S21: -0.3494 S22: 0.2997 S23: 0.0107 REMARK 3 S31: 0.1231 S32: -0.0830 S33: -0.1155 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESID 356 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8194 4.0495 13.1790 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1876 REMARK 3 T33: 0.1689 T12: -0.0047 REMARK 3 T13: 0.0343 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.2477 L22: 1.4250 REMARK 3 L33: 1.8874 L12: 0.6166 REMARK 3 L13: 0.6841 L23: -0.0606 REMARK 3 S TENSOR REMARK 3 S11: -0.1549 S12: 0.2211 S13: 0.1310 REMARK 3 S21: -0.1873 S22: 0.1249 S23: 0.1342 REMARK 3 S31: -0.1234 S32: -0.0897 S33: 0.0412 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE INCLUDED IN RIDING REMARK 3 POSITION. RESIDUES 158-162 AND 336-337 WERE EXCLUDED DUE TO REMARK 3 INSUFFICIENT ELECTRON DENSITY. REMARK 4 REMARK 4 2YPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.22343 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15833 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 40.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XMI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 UM PROTEIN AND 10 MM 23(SP)-CYCLIC REMARK 280 -AMPS MIXED IN 0.5 PLUS 0.5 UL DROPS WITH 25% PEG6000 AND 50 MM REMARK 280 ACETATE (PH3:PH5 2:1) IN RT, PH 4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.74500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 LEU A 160 REMARK 465 GLU A 161 REMARK 465 LYS A 162 REMARK 465 GLY A 336 REMARK 465 GLY A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 368 O HOH A 2107 2.07 REMARK 500 O HOH A 2086 O HOH A 2135 2.11 REMARK 500 O HOH A 2176 O HOH A 2179 2.15 REMARK 500 O HOH A 2045 O HOH A 2050 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2204 DISTANCE = 7.69 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QQX A 1379 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XMI RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2Y1P RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2Y3X RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH SULFATE REMARK 900 RELATED ID: 2YDB RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC NADP REMARK 900 RELATED ID: 2YDC RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH GTP REMARK 900 RELATED ID: 2YDD RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC AMP REMARK 900 RELATED ID: 2YOZ RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, CRYSTALLIZED WITH 2'-AMPS REMARK 900 RELATED ID: 2YP0 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, CRYSTALLIZED WITH 2'-AMPS REMARK 900 RELATED ID: 2YPE RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, WITH MUTATION H309S, CRYSTALLIZED WITH 2',3'- REMARK 900 CYCLIC AMP REMARK 900 RELATED ID: 2YPH RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, WITH MUTATION H230S, CRYSTALLIZED WITH 2',3-(RP)- REMARK 900 CYCLIC-AMPS REMARK 900 RELATED ID: 2YQ9 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, WITH MUTATION V321A, CRYSTALLIZED WITH 2'-AMP REMARK 900 RELATED ID: 3ZBR RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, WITH MUTATION H230S, CRYSTALLIZED WITH NADP REMARK 900 RELATED ID: 3ZBS RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, WITH MUTATION V321A, CRYSTALLIZED WITH 2'-AMPS REMARK 900 RELATED ID: 3ZBZ RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, WITH MUTATION V321A, CRYSTALLIZED WITH 2'-AMPS REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL GLYCINE REMAINS FROM TEV-CLEAVAGE OF EXPRESSION REMARK 999 TAG. RESIDUE NUMBERING IS ACCORDING TO CNPASE ISOFORM 2 ( REMARK 999 P16330-2). HISTIDINE 309 IS MUTATED TO SERINE. DBREF 2YPC A 159 378 UNP P16330 CN37_MOUSE 159 378 SEQADV 2YPC GLY A 158 UNP P16330 EXPRESSION TAG SEQADV 2YPC SER A 309 UNP P16330 HIS 309 ENGINEERED MUTATION SEQRES 1 A 221 GLY GLY LEU GLU LYS ASP PHE LEU PRO LEU TYR PHE GLY SEQRES 2 A 221 TRP PHE LEU THR LYS LYS SER SER GLU THR LEU ARG LYS SEQRES 3 A 221 ALA GLY GLN VAL PHE LEU GLU GLU LEU GLY ASN HIS LYS SEQRES 4 A 221 ALA PHE LYS LYS GLU LEU ARG HIS PHE ILE SER GLY ASP SEQRES 5 A 221 GLU PRO LYS GLU LYS LEU GLU LEU VAL SER TYR PHE GLY SEQRES 6 A 221 LYS ARG PRO PRO GLY VAL LEU HIS CYS THR THR LYS PHE SEQRES 7 A 221 CYS ASP TYR GLY LYS ALA ALA GLY ALA GLU GLU TYR ALA SEQRES 8 A 221 GLN GLN GLU VAL VAL LYS ARG SER TYR GLY LYS ALA PHE SEQRES 9 A 221 LYS LEU SER ILE SER ALA LEU PHE VAL THR PRO LYS THR SEQRES 10 A 221 ALA GLY ALA GLN VAL VAL LEU THR ASP GLN GLU LEU GLN SEQRES 11 A 221 LEU TRP PRO SER ASP LEU ASP LYS PRO SER ALA SER GLU SEQRES 12 A 221 GLY LEU PRO PRO GLY SER ARG ALA SER VAL THR LEU GLY SEQRES 13 A 221 CYS ALA ALA ASP VAL GLN PRO VAL GLN THR GLY LEU ASP SEQRES 14 A 221 LEU LEU ASP ILE LEU GLN GLN VAL LYS GLY GLY SER GLN SEQRES 15 A 221 GLY GLU ALA VAL GLY GLU LEU PRO ARG GLY LYS LEU TYR SEQRES 16 A 221 SER LEU GLY LYS GLY ARG TRP MET LEU SER LEU THR LYS SEQRES 17 A 221 LYS MET GLU VAL LYS ALA ILE PHE THR GLY TYR TYR GLY HET QQX A1379 34 HETNAM QQX [(3AR,4R,6R,6AR)-4-(6-AMINOPURIN-9-YL)-2-OXIDANYL-2- HETNAM 2 QQX SULFANYLIDENE-3A,4,6,6A-TETRAHYDROFURO[3,4-D][1,3, HETNAM 3 QQX 2]DIOXAPHOSPHOL-6-YL]METHANOL HETSYN QQX ADENOSINE-2',3'-CYCLOPHOSPHOROTHIOATE FORMUL 2 QQX C10 H12 N5 O5 P S FORMUL 3 HOH *204(H2 O) HELIX 1 1 THR A 174 HIS A 195 1 22 HELIX 2 2 HIS A 195 LYS A 200 1 6 HELIX 3 3 GLU A 201 PHE A 205 5 5 HELIX 4 4 GLU A 216 PHE A 221 1 6 HELIX 5 5 ASP A 237 LYS A 240 5 4 HELIX 6 6 GLY A 243 GLN A 249 1 7 HELIX 7 7 GLN A 250 TYR A 257 1 8 HELIX 8 8 THR A 282 GLN A 287 1 6 HELIX 9 9 PRO A 296 GLU A 300 5 5 HELIX 10 10 VAL A 321 VAL A 334 1 14 SHEET 1 AA 5 HIS A 230 PHE A 235 0 SHEET 2 AA 5 TYR A 168 LEU A 173 -1 O PHE A 169 N THR A 233 SHEET 3 AA 5 ARG A 358 TYR A 376 -1 O ILE A 372 N PHE A 172 SHEET 4 AA 5 GLY A 349 GLY A 355 -1 O LYS A 350 N SER A 362 SHEET 5 AA 5 GLY A 344 LEU A 346 1 O GLY A 344 N LEU A 351 SHEET 1 AB 6 HIS A 230 PHE A 235 0 SHEET 2 AB 6 TYR A 168 LEU A 173 -1 O PHE A 169 N THR A 233 SHEET 3 AB 6 ARG A 358 TYR A 376 -1 O ILE A 372 N PHE A 172 SHEET 4 AB 6 ALA A 260 VAL A 270 -1 O PHE A 261 N ALA A 371 SHEET 5 AB 6 THR A 274 VAL A 280 -1 O GLY A 276 N PHE A 269 SHEET 6 AB 6 SER A 309 CYS A 314 -1 O VAL A 310 N ALA A 277 SITE 1 AC1 15 TYR A 168 HIS A 230 THR A 232 PHE A 235 SITE 2 AC1 15 ARG A 307 THR A 311 PRO A 320 VAL A 321 SITE 3 AC1 15 HOH A2057 HOH A2064 HOH A2199 HOH A2200 SITE 4 AC1 15 HOH A2201 HOH A2202 HOH A2203 CRYST1 40.280 47.490 53.760 90.00 94.89 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024826 0.000000 0.002124 0.00000 SCALE2 0.000000 0.021057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018669 0.00000