HEADER HYDROLASE 30-OCT-12 2YPE TITLE CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- TITLE 2 PHOSPHODIESTERASE, WITH MUTATION H309S, CRYSTALLIZED WITH 2',3'- TITLE 3 CYCLIC AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CATALYTIC DOMAIN; COMPND 5 SYNONYM: CNP, CNPASE; COMPND 6 EC: 3.1.4.37; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PTH 27 KEYWDS HYDROLASE, MYELIN, NERVOUS SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.MYLLYKOSKI,A.RAASAKKA,M.LEHTIMAKI,H.HAN,P.KURSULA REVDAT 7 20-DEC-23 2YPE 1 REMARK REVDAT 6 17-JUL-19 2YPE 1 REMARK REVDAT 5 15-MAY-19 2YPE 1 REMARK REVDAT 4 20-DEC-17 2YPE 1 COMPND JRNL REMARK HETNAM REVDAT 4 2 1 ATOM REVDAT 3 13-NOV-13 2YPE 1 JRNL REVDAT 2 17-JUL-13 2YPE 1 JRNL REVDAT 1 10-JUL-13 2YPE 0 JRNL AUTH M.MYLLYKOSKI,A.RAASAKKA,M.LEHTIMAKI,H.HAN,I.KURSULA, JRNL AUTH 2 P.KURSULA JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE REACTION CYCLE OF JRNL TITL 2 2',3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE, A UNIQUE JRNL TITL 3 MEMBER OF THE 2H PHOSPHOESTERASE FAMILY JRNL REF J.MOL.BIOL. V. 425 4307 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23831225 JRNL DOI 10.1016/J.JMB.2013.06.012 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.9960 - 3.4140 1.00 2595 137 0.1379 0.1713 REMARK 3 2 3.4140 - 2.7280 1.00 2549 134 0.1520 0.1843 REMARK 3 3 2.7280 - 2.3885 1.00 2533 134 0.1826 0.2477 REMARK 3 4 2.3885 - 2.1726 1.00 2529 133 0.1836 0.2185 REMARK 3 5 2.1726 - 2.0182 1.00 2523 133 0.2053 0.2365 REMARK 3 6 2.0182 - 1.9001 0.99 2501 131 0.2542 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1771 REMARK 3 ANGLE : 0.690 2393 REMARK 3 CHIRALITY : 0.041 257 REMARK 3 PLANARITY : 0.002 303 REMARK 3 DIHEDRAL : 10.879 660 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 162 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8437 11.7207 74.3579 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.1843 REMARK 3 T33: 0.1620 T12: 0.0347 REMARK 3 T13: 0.0162 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.8284 L22: 2.9889 REMARK 3 L33: 1.8715 L12: 0.7475 REMARK 3 L13: 0.2409 L23: 1.1861 REMARK 3 S TENSOR REMARK 3 S11: -0.1418 S12: -0.1519 S13: 0.2827 REMARK 3 S21: -0.0780 S22: 0.0319 S23: 0.2118 REMARK 3 S31: -0.1607 S32: -0.2301 S33: 0.1713 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 195 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8493 -11.0583 61.6717 REMARK 3 T TENSOR REMARK 3 T11: 0.5323 T22: 0.3393 REMARK 3 T33: 0.3652 T12: -0.0944 REMARK 3 T13: -0.0653 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 7.4202 L22: 3.8533 REMARK 3 L33: 2.1266 L12: 1.1164 REMARK 3 L13: 0.4287 L23: 0.6576 REMARK 3 S TENSOR REMARK 3 S11: 0.2413 S12: 0.1092 S13: -0.7807 REMARK 3 S21: -0.3035 S22: -0.0059 S23: 0.4762 REMARK 3 S31: 1.3859 S32: -0.3410 S33: 0.0149 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 217 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5348 11.0468 73.6481 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.1457 REMARK 3 T33: 0.1203 T12: 0.0175 REMARK 3 T13: 0.0176 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.2760 L22: 2.4956 REMARK 3 L33: 1.6241 L12: 0.7084 REMARK 3 L13: 0.2824 L23: 0.1155 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: 0.0105 S13: 0.0494 REMARK 3 S21: -0.0079 S22: 0.0681 S23: -0.1067 REMARK 3 S31: -0.1203 S32: 0.0771 S33: 0.0169 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 289 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0304 4.7573 70.7422 REMARK 3 T TENSOR REMARK 3 T11: 0.4013 T22: 0.5149 REMARK 3 T33: 0.3835 T12: 0.0725 REMARK 3 T13: 0.0272 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 5.3055 L22: 4.7870 REMARK 3 L33: 3.1825 L12: 0.9535 REMARK 3 L13: 2.1452 L23: 3.6553 REMARK 3 S TENSOR REMARK 3 S11: 0.1583 S12: 0.0956 S13: -0.9280 REMARK 3 S21: 0.1497 S22: 0.0401 S23: -0.7480 REMARK 3 S31: 1.0171 S32: 0.5954 S33: -0.1564 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 300 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0910 1.5426 67.7171 REMARK 3 T TENSOR REMARK 3 T11: 0.1680 T22: 0.1761 REMARK 3 T33: 0.1998 T12: -0.0004 REMARK 3 T13: 0.0142 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.7558 L22: 3.1185 REMARK 3 L33: 3.4910 L12: 1.0011 REMARK 3 L13: -1.2328 L23: -0.5252 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: 0.0553 S13: -0.1929 REMARK 3 S21: -0.3649 S22: 0.0281 S23: -0.3202 REMARK 3 S31: 0.0628 S32: 0.2569 S33: 0.0720 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 335 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2208 3.0421 51.1313 REMARK 3 T TENSOR REMARK 3 T11: 0.3614 T22: 0.4664 REMARK 3 T33: 0.2614 T12: -0.0177 REMARK 3 T13: -0.0945 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.3033 L22: 2.2369 REMARK 3 L33: 2.3857 L12: 0.3629 REMARK 3 L13: 0.7953 L23: 0.2152 REMARK 3 S TENSOR REMARK 3 S11: 0.0971 S12: 0.4059 S13: 0.1540 REMARK 3 S21: -0.5680 S22: 0.1665 S23: -0.1581 REMARK 3 S31: 0.5175 S32: 0.3873 S33: -0.1514 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 349 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4007 9.2506 64.2504 REMARK 3 T TENSOR REMARK 3 T11: 0.0873 T22: 0.1634 REMARK 3 T33: 0.1203 T12: -0.0312 REMARK 3 T13: 0.0678 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.6714 L22: 3.0498 REMARK 3 L33: 3.4219 L12: 0.6192 REMARK 3 L13: 1.3397 L23: 1.5457 REMARK 3 S TENSOR REMARK 3 S11: -0.1284 S12: 0.1824 S13: 0.0305 REMARK 3 S21: -0.4077 S22: 0.0858 S23: 0.0837 REMARK 3 S31: -0.1629 S32: -0.0176 S33: 0.0205 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE ADDED IN RIDING REMARK 3 POSITION. RESIDUES 158-161 AND 336-338 WERE EXCLUDED DUE TO REMARK 3 INSUFFICIENT ELECTRON DENSITY. REMARK 4 REMARK 4 2YPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.815 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 1.01000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XMI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 UM PROTEIN AND 10 MM 23-CYCLIC AMP REMARK 280 MIXED IN 0.5 PLUS 0.5 DROPS WITH 50 MM SODIUM ACETATE (1:1, PH3: REMARK 280 PH5) AND 23% PEG 4000 IN 4C TEMP, PH 4, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.56500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 LEU A 160 REMARK 465 GLU A 161 REMARK 465 GLY A 336 REMARK 465 GLY A 337 REMARK 465 SER A 338 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2171 O HOH A 2230 1.99 REMARK 500 OE1 GLU A 245 O HOH A 2107 2.17 REMARK 500 O HOH A 2134 O HOH A 2165 2.17 REMARK 500 O HOH A 2223 O HOH A 2232 2.19 REMARK 500 OXT ACY A 1381 O HOH A 2199 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 213 -174.65 -55.19 REMARK 500 PHE A 221 59.76 -92.15 REMARK 500 THR A 374 -169.00 -164.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2136 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACK A 1382 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XMI RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2Y1P RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2Y3X RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH SULFATE REMARK 900 RELATED ID: 2YDB RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC NADP REMARK 900 RELATED ID: 2YDC RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH GTP REMARK 900 RELATED ID: 2YDD RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC AMP REMARK 900 RELATED ID: 2YOZ RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, CRYSTALLIZED WITH 2'-AMPS REMARK 900 RELATED ID: 2YP0 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, CRYSTALLIZED WITH 2'-AMPS REMARK 900 RELATED ID: 2YPH RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3 '- REMARK 900 PHOSPHODIESTERASE, WITH MUTATION H230S, CRYSTALLIZED WITH 2',3-(RP)- REMARK 900 CYCLIC-AMPS REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL GLYCINE REMAINS FROM TEV-CLEAVAGE OF EXPRESSION REMARK 999 TAG. RESIDUE NUMBERING IS ACCORDING TO CNPASE ISOFORM 1 ( REMARK 999 P16330-2). HISTIDINE 309 IS MUTATED TO SERINE. DBREF 2YPE A 159 378 UNP P16330 CN37_MOUSE 159 378 SEQADV 2YPE GLY A 158 UNP P16330 EXPRESSION TAG SEQADV 2YPE SER A 309 UNP P16330 HIS 309 ENGINEERED MUTATION SEQRES 1 A 221 GLY GLY LEU GLU LYS ASP PHE LEU PRO LEU TYR PHE GLY SEQRES 2 A 221 TRP PHE LEU THR LYS LYS SER SER GLU THR LEU ARG LYS SEQRES 3 A 221 ALA GLY GLN VAL PHE LEU GLU GLU LEU GLY ASN HIS LYS SEQRES 4 A 221 ALA PHE LYS LYS GLU LEU ARG HIS PHE ILE SER GLY ASP SEQRES 5 A 221 GLU PRO LYS GLU LYS LEU GLU LEU VAL SER TYR PHE GLY SEQRES 6 A 221 LYS ARG PRO PRO GLY VAL LEU HIS CYS THR THR LYS PHE SEQRES 7 A 221 CYS ASP TYR GLY LYS ALA ALA GLY ALA GLU GLU TYR ALA SEQRES 8 A 221 GLN GLN GLU VAL VAL LYS ARG SER TYR GLY LYS ALA PHE SEQRES 9 A 221 LYS LEU SER ILE SER ALA LEU PHE VAL THR PRO LYS THR SEQRES 10 A 221 ALA GLY ALA GLN VAL VAL LEU THR ASP GLN GLU LEU GLN SEQRES 11 A 221 LEU TRP PRO SER ASP LEU ASP LYS PRO SER ALA SER GLU SEQRES 12 A 221 GLY LEU PRO PRO GLY SER ARG ALA SER VAL THR LEU GLY SEQRES 13 A 221 CYS ALA ALA ASP VAL GLN PRO VAL GLN THR GLY LEU ASP SEQRES 14 A 221 LEU LEU ASP ILE LEU GLN GLN VAL LYS GLY GLY SER GLN SEQRES 15 A 221 GLY GLU ALA VAL GLY GLU LEU PRO ARG GLY LYS LEU TYR SEQRES 16 A 221 SER LEU GLY LYS GLY ARG TRP MET LEU SER LEU THR LYS SEQRES 17 A 221 LYS MET GLU VAL LYS ALA ILE PHE THR GLY TYR TYR GLY HET ACY A1379 7 HET CL A1380 1 HET ACY A1381 7 HET ACK A1382 33 HETNAM ACY ACETIC ACID HETNAM CL CHLORIDE ION HETNAM ACK 2',3'- CYCLIC AMP FORMUL 2 ACY 2(C2 H4 O2) FORMUL 3 CL CL 1- FORMUL 5 ACK C10 H12 N5 O6 P FORMUL 6 HOH *263(H2 O) HELIX 1 1 THR A 174 HIS A 195 1 22 HELIX 2 2 HIS A 195 GLU A 201 1 7 HELIX 3 3 GLU A 201 ILE A 206 1 6 HELIX 4 4 GLU A 216 PHE A 221 1 6 HELIX 5 5 ASP A 237 LYS A 240 5 4 HELIX 6 6 GLY A 243 GLN A 249 1 7 HELIX 7 7 GLN A 250 TYR A 257 1 8 HELIX 8 8 THR A 282 GLN A 287 1 6 HELIX 9 9 PRO A 296 GLU A 300 5 5 HELIX 10 10 VAL A 321 LYS A 335 1 15 SHEET 1 AA 5 HIS A 230 PHE A 235 0 SHEET 2 AA 5 TYR A 168 LEU A 173 -1 O PHE A 169 N THR A 233 SHEET 3 AA 5 ARG A 358 TYR A 376 -1 O ILE A 372 N PHE A 172 SHEET 4 AA 5 GLY A 349 GLY A 355 -1 O LYS A 350 N SER A 362 SHEET 5 AA 5 GLY A 344 LEU A 346 1 O GLY A 344 N LEU A 351 SHEET 1 AB 6 HIS A 230 PHE A 235 0 SHEET 2 AB 6 TYR A 168 LEU A 173 -1 O PHE A 169 N THR A 233 SHEET 3 AB 6 ARG A 358 TYR A 376 -1 O ILE A 372 N PHE A 172 SHEET 4 AB 6 ALA A 260 VAL A 270 -1 O PHE A 261 N ALA A 371 SHEET 5 AB 6 THR A 274 VAL A 279 -1 O GLY A 276 N PHE A 269 SHEET 6 AB 6 SER A 309 CYS A 314 -1 O VAL A 310 N ALA A 277 SITE 1 AC1 3 ALA A 342 GLY A 344 GLU A 345 SITE 1 AC2 2 LYS A 273 HOH A2149 SITE 1 AC3 7 TYR A 220 PRO A 272 LYS A 273 ALA A 315 SITE 2 AC3 7 ASP A 317 HOH A2151 HOH A2199 SITE 1 AC4 16 TYR A 168 HIS A 230 THR A 232 PHE A 235 SITE 2 AC4 16 ARG A 307 THR A 311 PRO A 320 VAL A 321 SITE 3 AC4 16 HOH A2085 HOH A2089 HOH A2256 HOH A2259 SITE 4 AC4 16 HOH A2260 HOH A2261 HOH A2262 HOH A2263 CRYST1 40.800 47.130 53.780 90.00 94.28 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024510 0.000000 0.001834 0.00000 SCALE2 0.000000 0.021218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018646 0.00000