HEADER PROTEIN TRANSPORT 31-OCT-12 2YPS TITLE CRYSTAL STRUCTURE OF THE PX DOMAIN OF HUMAN SORTING NEXIN 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PX DOMAIN, RESIDUES 24-155; COMPND 5 SYNONYM: PROTEIN SDP3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 OTHER_DETAILS: MGC KEYWDS PROTEIN TRANSPORT, ENDOSOME EXPDTA X-RAY DIFFRACTION AUTHOR P.CANNING,W.KIYANI,D.S.FROESE,T.KROJER,C.STRAIN-DAMERELL,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,W.W.YUE REVDAT 3 20-DEC-23 2YPS 1 REMARK REVDAT 2 24-JAN-18 2YPS 1 JRNL REVDAT 1 20-MAR-13 2YPS 0 JRNL AUTH P.CANNING,D.S.FROESE,T.KROJER,C.STRAIN-DAMERELL,F.VON DELFT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,W.W.YUE JRNL TITL CRYSTAL STRUCTURE OF THE PX DOMAIN OF HUMAN SORTING NEXIN 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 15729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 836 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.61000 REMARK 3 B22 (A**2) : -1.58000 REMARK 3 B33 (A**2) : -2.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.540 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.300 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.640 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3151 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2918 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4270 ; 1.505 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6635 ; 1.179 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 6.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;38.192 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 485 ;14.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3556 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 731 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5996 19.5605 -29.1201 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.1300 REMARK 3 T33: 0.2184 T12: -0.0215 REMARK 3 T13: 0.1022 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 2.0334 L22: 4.0532 REMARK 3 L33: 0.1793 L12: -0.4630 REMARK 3 L13: 0.3540 L23: 0.5992 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: -0.2010 S13: 0.0439 REMARK 3 S21: 0.1317 S22: 0.0469 S23: -0.0030 REMARK 3 S31: 0.0091 S32: -0.0382 S33: -0.0006 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 148 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9953 3.2580 -16.5252 REMARK 3 T TENSOR REMARK 3 T11: 0.0324 T22: 0.0982 REMARK 3 T33: 0.1999 T12: -0.0414 REMARK 3 T13: 0.0324 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 1.5839 L22: 0.8773 REMARK 3 L33: 0.8932 L12: 0.1906 REMARK 3 L13: -0.6902 L23: -0.4442 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0892 S13: 0.0926 REMARK 3 S21: -0.0038 S22: -0.0925 S23: -0.0668 REMARK 3 S31: 0.0863 S32: 0.0413 S33: 0.0923 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 27 C 147 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0235 -3.3839 -35.1579 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.2415 REMARK 3 T33: 0.0837 T12: -0.1127 REMARK 3 T13: 0.0366 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.4894 L22: 1.0951 REMARK 3 L33: 0.4618 L12: 0.9533 REMARK 3 L13: -1.0550 L23: -0.4349 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: 0.3306 S13: -0.0416 REMARK 3 S21: 0.0249 S22: 0.0455 S23: -0.0208 REMARK 3 S31: 0.0329 S32: -0.1799 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 27 D 150 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3505 -12.9242 -11.2757 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.1162 REMARK 3 T33: 0.0738 T12: -0.0780 REMARK 3 T13: 0.0276 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.5681 L22: 1.6013 REMARK 3 L33: 0.7111 L12: 1.0415 REMARK 3 L13: -0.0993 L23: 0.3109 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: -0.0612 S13: 0.0116 REMARK 3 S21: 0.1539 S22: 0.0733 S23: -0.0494 REMARK 3 S31: 0.1524 S32: -0.1169 S33: -0.0527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9611 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16601 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 51.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CSK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M FORMATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.92000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.92000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.23000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.92000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.85000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.23000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.92000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.85000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C2001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 37 REMARK 465 THR A 38 REMARK 465 VAL A 39 REMARK 465 GLY A 40 REMARK 465 VAL A 41 REMARK 465 LEU A 98 REMARK 465 ARG A 99 REMARK 465 GLN A 100 REMARK 465 LEU A 101 REMARK 465 PRO A 102 REMARK 465 PHE A 103 REMARK 465 ARG A 104 REMARK 465 GLY A 105 REMARK 465 ASP A 106 REMARK 465 ASP A 107 REMARK 465 GLY A 108 REMARK 465 ILE A 109 REMARK 465 PHE A 110 REMARK 465 ASP A 111 REMARK 465 ASP A 112 REMARK 465 ILE A 149 REMARK 465 ILE A 150 REMARK 465 ASP A 151 REMARK 465 LYS A 152 REMARK 465 SER A 153 REMARK 465 TYR A 154 REMARK 465 THR A 155 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 PRO B 24 REMARK 465 PRO B 25 REMARK 465 SER B 26 REMARK 465 PRO B 36 REMARK 465 GLN B 37 REMARK 465 THR B 38 REMARK 465 VAL B 39 REMARK 465 GLY B 40 REMARK 465 VAL B 41 REMARK 465 LEU B 98 REMARK 465 ARG B 99 REMARK 465 GLN B 100 REMARK 465 LEU B 101 REMARK 465 PRO B 102 REMARK 465 PHE B 103 REMARK 465 ARG B 104 REMARK 465 GLY B 105 REMARK 465 ASP B 106 REMARK 465 ASP B 107 REMARK 465 GLY B 108 REMARK 465 ILE B 109 REMARK 465 PHE B 110 REMARK 465 ASP B 111 REMARK 465 ILE B 149 REMARK 465 ILE B 150 REMARK 465 ASP B 151 REMARK 465 LYS B 152 REMARK 465 SER B 153 REMARK 465 TYR B 154 REMARK 465 THR B 155 REMARK 465 SER C -1 REMARK 465 MET C 0 REMARK 465 PRO C 24 REMARK 465 PRO C 25 REMARK 465 SER C 26 REMARK 465 PRO C 36 REMARK 465 GLN C 37 REMARK 465 THR C 38 REMARK 465 VAL C 39 REMARK 465 GLY C 40 REMARK 465 VAL C 41 REMARK 465 PHE C 97 REMARK 465 LEU C 98 REMARK 465 ARG C 99 REMARK 465 GLN C 100 REMARK 465 LEU C 101 REMARK 465 PRO C 102 REMARK 465 PHE C 103 REMARK 465 ARG C 104 REMARK 465 GLY C 105 REMARK 465 ASP C 106 REMARK 465 ASP C 107 REMARK 465 GLY C 108 REMARK 465 ILE C 109 REMARK 465 PHE C 110 REMARK 465 ASP C 111 REMARK 465 ASP C 112 REMARK 465 ASN C 113 REMARK 465 GLU C 148 REMARK 465 ILE C 149 REMARK 465 ILE C 150 REMARK 465 ASP C 151 REMARK 465 LYS C 152 REMARK 465 SER C 153 REMARK 465 TYR C 154 REMARK 465 THR C 155 REMARK 465 SER D -1 REMARK 465 MET D 0 REMARK 465 PRO D 24 REMARK 465 PRO D 25 REMARK 465 SER D 26 REMARK 465 PRO D 36 REMARK 465 GLN D 37 REMARK 465 THR D 38 REMARK 465 VAL D 39 REMARK 465 GLY D 40 REMARK 465 VAL D 41 REMARK 465 PHE D 97 REMARK 465 LEU D 98 REMARK 465 ARG D 99 REMARK 465 GLN D 100 REMARK 465 LEU D 101 REMARK 465 PRO D 102 REMARK 465 PHE D 103 REMARK 465 ARG D 104 REMARK 465 GLY D 105 REMARK 465 ASP D 106 REMARK 465 ASP D 107 REMARK 465 GLY D 108 REMARK 465 ILE D 109 REMARK 465 PHE D 110 REMARK 465 ASP D 111 REMARK 465 ASP D 112 REMARK 465 ASN D 113 REMARK 465 ASP D 151 REMARK 465 LYS D 152 REMARK 465 SER D 153 REMARK 465 TYR D 154 REMARK 465 THR D 155 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 MET A 0 CG SD CE REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 50 CD OE1 OE2 REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 68 NE CZ NH1 NH2 REMARK 470 SER A 85 OG REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 LYS A 95 CE NZ REMARK 470 PHE A 97 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 PHE A 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 115 CG1 CG2 CD1 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 ARG A 118 CZ NH1 NH2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 LYS A 128 CE NZ REMARK 470 ARG A 139 NE CZ NH1 NH2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 54 CD CE NZ REMARK 470 LYS B 61 CD CE NZ REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 SER B 85 OG REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 PHE B 97 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 112 CG OD1 OD2 REMARK 470 ASN B 113 CG OD1 ND2 REMARK 470 PHE B 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 116 CG CD OE1 OE2 REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 ARG B 118 CZ NH1 NH2 REMARK 470 LYS B 128 NZ REMARK 470 ARG B 139 NE CZ NH1 NH2 REMARK 470 ASP B 147 CG OD1 OD2 REMARK 470 ASN C 27 CG OD1 ND2 REMARK 470 GLU C 30 CG CD OE1 OE2 REMARK 470 ARG C 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 50 CG CD OE1 OE2 REMARK 470 ARG C 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 54 CE NZ REMARK 470 LYS C 61 CG CD CE NZ REMARK 470 LYS C 63 CG CD CE NZ REMARK 470 GLU C 64 CG CD OE1 OE2 REMARK 470 LYS C 95 CG CD CE NZ REMARK 470 PHE C 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 117 CG CD OE1 OE2 REMARK 470 ARG C 118 NH1 NH2 REMARK 470 LYS C 119 CG CD CE NZ REMARK 470 GLN C 120 CD OE1 NE2 REMARK 470 GLN C 124 CG CD OE1 NE2 REMARK 470 LYS C 128 NZ REMARK 470 ARG C 139 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 147 CG OD1 OD2 REMARK 470 ASN D 27 CG OD1 ND2 REMARK 470 GLU D 30 CG CD OE1 OE2 REMARK 470 ASP D 32 CG OD1 OD2 REMARK 470 ARG D 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 50 CG CD OE1 OE2 REMARK 470 ARG D 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 61 CG CD CE NZ REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 LYS D 95 CG CD CE NZ REMARK 470 PHE D 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 119 NZ REMARK 470 GLN D 120 CG CD OE1 NE2 REMARK 470 ARG D 139 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 148 CG CD OE1 OE2 REMARK 470 ILE D 149 CG1 CG2 CD1 REMARK 470 ILE D 150 CG1 CG2 CD1 DBREF 2YPS A 24 155 UNP O60493 SNX3_HUMAN 24 155 DBREF 2YPS B 24 155 UNP O60493 SNX3_HUMAN 24 155 DBREF 2YPS C 24 155 UNP O60493 SNX3_HUMAN 24 155 DBREF 2YPS D 24 155 UNP O60493 SNX3_HUMAN 24 155 SEQADV 2YPS SER A -1 UNP O60493 EXPRESSION TAG SEQADV 2YPS MET A 0 UNP O60493 EXPRESSION TAG SEQADV 2YPS SER B -1 UNP O60493 EXPRESSION TAG SEQADV 2YPS MET B 0 UNP O60493 EXPRESSION TAG SEQADV 2YPS SER C -1 UNP O60493 EXPRESSION TAG SEQADV 2YPS MET C 0 UNP O60493 EXPRESSION TAG SEQADV 2YPS SER D -1 UNP O60493 EXPRESSION TAG SEQADV 2YPS MET D 0 UNP O60493 EXPRESSION TAG SEQRES 1 A 134 SER MET PRO PRO SER ASN PHE LEU GLU ILE ASP VAL SER SEQRES 2 A 134 ASN PRO GLN THR VAL GLY VAL GLY ARG GLY ARG PHE THR SEQRES 3 A 134 THR TYR GLU ILE ARG VAL LYS THR ASN LEU PRO ILE PHE SEQRES 4 A 134 LYS LEU LYS GLU SER THR VAL ARG ARG ARG TYR SER ASP SEQRES 5 A 134 PHE GLU TRP LEU ARG SER GLU LEU GLU ARG GLU SER LYS SEQRES 6 A 134 VAL VAL VAL PRO PRO LEU PRO GLY LYS ALA PHE LEU ARG SEQRES 7 A 134 GLN LEU PRO PHE ARG GLY ASP ASP GLY ILE PHE ASP ASP SEQRES 8 A 134 ASN PHE ILE GLU GLU ARG LYS GLN GLY LEU GLU GLN PHE SEQRES 9 A 134 ILE ASN LYS VAL ALA GLY HIS PRO LEU ALA GLN ASN GLU SEQRES 10 A 134 ARG CYS LEU HIS MET PHE LEU GLN ASP GLU ILE ILE ASP SEQRES 11 A 134 LYS SER TYR THR SEQRES 1 B 134 SER MET PRO PRO SER ASN PHE LEU GLU ILE ASP VAL SER SEQRES 2 B 134 ASN PRO GLN THR VAL GLY VAL GLY ARG GLY ARG PHE THR SEQRES 3 B 134 THR TYR GLU ILE ARG VAL LYS THR ASN LEU PRO ILE PHE SEQRES 4 B 134 LYS LEU LYS GLU SER THR VAL ARG ARG ARG TYR SER ASP SEQRES 5 B 134 PHE GLU TRP LEU ARG SER GLU LEU GLU ARG GLU SER LYS SEQRES 6 B 134 VAL VAL VAL PRO PRO LEU PRO GLY LYS ALA PHE LEU ARG SEQRES 7 B 134 GLN LEU PRO PHE ARG GLY ASP ASP GLY ILE PHE ASP ASP SEQRES 8 B 134 ASN PHE ILE GLU GLU ARG LYS GLN GLY LEU GLU GLN PHE SEQRES 9 B 134 ILE ASN LYS VAL ALA GLY HIS PRO LEU ALA GLN ASN GLU SEQRES 10 B 134 ARG CYS LEU HIS MET PHE LEU GLN ASP GLU ILE ILE ASP SEQRES 11 B 134 LYS SER TYR THR SEQRES 1 C 134 SER MET PRO PRO SER ASN PHE LEU GLU ILE ASP VAL SER SEQRES 2 C 134 ASN PRO GLN THR VAL GLY VAL GLY ARG GLY ARG PHE THR SEQRES 3 C 134 THR TYR GLU ILE ARG VAL LYS THR ASN LEU PRO ILE PHE SEQRES 4 C 134 LYS LEU LYS GLU SER THR VAL ARG ARG ARG TYR SER ASP SEQRES 5 C 134 PHE GLU TRP LEU ARG SER GLU LEU GLU ARG GLU SER LYS SEQRES 6 C 134 VAL VAL VAL PRO PRO LEU PRO GLY LYS ALA PHE LEU ARG SEQRES 7 C 134 GLN LEU PRO PHE ARG GLY ASP ASP GLY ILE PHE ASP ASP SEQRES 8 C 134 ASN PHE ILE GLU GLU ARG LYS GLN GLY LEU GLU GLN PHE SEQRES 9 C 134 ILE ASN LYS VAL ALA GLY HIS PRO LEU ALA GLN ASN GLU SEQRES 10 C 134 ARG CYS LEU HIS MET PHE LEU GLN ASP GLU ILE ILE ASP SEQRES 11 C 134 LYS SER TYR THR SEQRES 1 D 134 SER MET PRO PRO SER ASN PHE LEU GLU ILE ASP VAL SER SEQRES 2 D 134 ASN PRO GLN THR VAL GLY VAL GLY ARG GLY ARG PHE THR SEQRES 3 D 134 THR TYR GLU ILE ARG VAL LYS THR ASN LEU PRO ILE PHE SEQRES 4 D 134 LYS LEU LYS GLU SER THR VAL ARG ARG ARG TYR SER ASP SEQRES 5 D 134 PHE GLU TRP LEU ARG SER GLU LEU GLU ARG GLU SER LYS SEQRES 6 D 134 VAL VAL VAL PRO PRO LEU PRO GLY LYS ALA PHE LEU ARG SEQRES 7 D 134 GLN LEU PRO PHE ARG GLY ASP ASP GLY ILE PHE ASP ASP SEQRES 8 D 134 ASN PHE ILE GLU GLU ARG LYS GLN GLY LEU GLU GLN PHE SEQRES 9 D 134 ILE ASN LYS VAL ALA GLY HIS PRO LEU ALA GLN ASN GLU SEQRES 10 D 134 ARG CYS LEU HIS MET PHE LEU GLN ASP GLU ILE ILE ASP SEQRES 11 D 134 LYS SER TYR THR FORMUL 5 HOH *10(H2 O) HELIX 1 1 ARG A 43 THR A 47 5 5 HELIX 2 2 ARG A 70 SER A 85 1 16 HELIX 3 3 ASN A 113 HIS A 132 1 20 HELIX 4 4 HIS A 132 ASN A 137 1 6 HELIX 5 5 GLU A 138 ASP A 147 1 10 HELIX 6 6 ARG B 43 PHE B 46 5 4 HELIX 7 7 TYR B 71 SER B 85 1 15 HELIX 8 8 ASP B 112 HIS B 132 1 21 HELIX 9 9 HIS B 132 ASN B 137 1 6 HELIX 10 10 GLU B 138 ASP B 147 1 10 HELIX 11 11 ARG C 43 PHE C 46 5 4 HELIX 12 12 TYR C 71 SER C 85 1 15 HELIX 13 13 PHE C 114 HIS C 132 1 19 HELIX 14 14 HIS C 132 ASN C 137 1 6 HELIX 15 15 GLU C 138 ASP C 147 1 10 HELIX 16 16 ARG D 43 PHE D 46 5 4 HELIX 17 17 TYR D 71 SER D 85 1 15 HELIX 18 18 PHE D 114 HIS D 132 1 19 HELIX 19 19 HIS D 132 ASN D 137 1 6 HELIX 20 20 GLU D 138 ASP D 147 1 10 SHEET 1 AA 3 LEU A 29 SER A 34 0 SHEET 2 AA 3 TYR A 49 THR A 55 -1 O GLU A 50 N SER A 34 SHEET 3 AA 3 GLU A 64 ARG A 69 -1 O SER A 65 N VAL A 53 SHEET 1 BA 3 LEU B 29 SER B 34 0 SHEET 2 BA 3 THR B 48 THR B 55 -1 O GLU B 50 N SER B 34 SHEET 3 BA 3 GLU B 64 ARG B 70 -1 O SER B 65 N VAL B 53 SHEET 1 CA 3 LEU C 29 SER C 34 0 SHEET 2 CA 3 THR C 48 THR C 55 -1 O GLU C 50 N SER C 34 SHEET 3 CA 3 GLU C 64 ARG C 70 -1 O SER C 65 N VAL C 53 SHEET 1 DA 3 LEU D 29 SER D 34 0 SHEET 2 DA 3 THR D 48 THR D 55 -1 O GLU D 50 N SER D 34 SHEET 3 DA 3 GLU D 64 ARG D 70 -1 O SER D 65 N VAL D 53 CRYST1 69.840 81.700 184.460 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014318 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005421 0.00000 MTRIX1 1 -0.120600 0.992000 -0.036700 -0.48050 1 MTRIX2 1 0.992300 0.121500 0.023000 -0.01500 1 MTRIX3 1 0.027300 -0.033700 -0.999100 -46.41750 1 MTRIX1 2 -0.364300 -0.559000 0.744900 20.66940 1 MTRIX2 2 -0.562500 -0.505400 -0.654300 -12.74400 1 MTRIX3 2 0.742200 -0.657300 -0.130300 -27.22430 1 MTRIX1 3 -0.476400 -0.458100 -0.750400 -14.15570 1 MTRIX2 3 -0.428100 -0.624600 0.653100 17.58230 1 MTRIX3 3 -0.767900 0.632400 0.101500 -21.09930 1 MTRIX1 4 -0.493500 -0.443000 -0.748500 -14.82490 1 MTRIX2 4 -0.461100 -0.596500 0.657000 18.37650 1 MTRIX3 4 -0.737500 0.669300 0.090100 -20.17430 1 MTRIX1 5 -0.384300 -0.546900 0.743800 19.84700 1 MTRIX2 5 -0.501200 -0.553000 -0.665600 -12.34750 1 MTRIX3 5 0.775300 -0.628600 -0.061600 -24.48210 1 MTRIX1 6 -0.151000 0.988400 -0.014600 0.23480 1 MTRIX2 6 0.988100 0.151300 0.026200 0.08280 1 MTRIX3 6 0.028100 -0.010500 -0.999500 -46.52440 1