HEADER VIRAL PROTEIN 04-NOV-12 2YQ3 TITLE STRUCTURE OF BVDV1 ENVELOPE GLYCOPROTEIN E2, PH5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BVDV1 E2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BVDV1 E2 ECTODOMAIN, RESIDUES 1-337; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOVINE VIRAL DIARRHEA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11099; SOURCE 4 STRAIN: PE515; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS VIRAL PROTEIN, PESTIVIRUS, VIRUS FUSION EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,O.IOURIN,K.HARLOS,J.M.GRIMES,D.I.STUART REVDAT 7 13-NOV-24 2YQ3 1 REMARK REVDAT 6 20-DEC-23 2YQ3 1 HETSYN REVDAT 5 29-JUL-20 2YQ3 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 03-APR-19 2YQ3 1 SOURCE LINK REVDAT 3 26-NOV-14 2YQ3 1 REMARK REVDAT 2 20-FEB-13 2YQ3 1 JRNL REVDAT 1 16-JAN-13 2YQ3 0 JRNL AUTH K.EL OMARI,O.IOURIN,K.HARLOS,J.M.GRIMES,D.I.STUART JRNL TITL STRUCTURE OF A PESTIVIRUS ENVELOPE GLYCOPROTEIN E2 CLARIFIES JRNL TITL 2 ITS ROLE IN CELL ENTRY. JRNL REF CELL REP. V. 3 30 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 23273918 JRNL DOI 10.1016/J.CELREP.2012.12.001 REMARK 2 REMARK 2 RESOLUTION. 3.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 873 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.29 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2654 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2377 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2506 REMARK 3 BIN R VALUE (WORKING SET) : 0.2395 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.58 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.11360 REMARK 3 B22 (A**2) : 7.75650 REMARK 3 B33 (A**2) : 7.35710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.885 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 4.522 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.424 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 2.592 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.427 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.824 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.821 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4304 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5836 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1979 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 102 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 616 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4304 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 582 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4298 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.23 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.11 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -50.7237 8.9575 -27.1014 REMARK 3 T TENSOR REMARK 3 T11: 0.1122 T22: -0.0532 REMARK 3 T33: -0.0062 T12: 0.0473 REMARK 3 T13: 0.0167 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 0.2465 L22: 0.9447 REMARK 3 L33: 5.3911 L12: 0.2314 REMARK 3 L13: 0.0017 L23: 1.8688 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: 0.0151 S13: 0.0755 REMARK 3 S21: -0.2742 S22: 0.0008 S23: -0.0970 REMARK 3 S31: 0.0700 S32: -0.2883 S33: 0.0306 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -33.7220 2.9117 -104.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.1896 T22: -0.1150 REMARK 3 T33: -0.0182 T12: -0.0105 REMARK 3 T13: 0.0041 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.7015 L22: 0.0245 REMARK 3 L33: 3.6253 L12: 0.2015 REMARK 3 L13: -1.2151 L23: -0.2598 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.0150 S13: 0.1913 REMARK 3 S21: 0.2409 S22: 0.0931 S23: -0.1902 REMARK 3 S31: 0.1947 S32: -0.2224 S33: -0.0244 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0341 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17239 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.24000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YQ2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 6000, 79 MM CITRIC BUFFER PH REMARK 280 5.0, 20MM MGSO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 80.36800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.84750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.36800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.84750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 CYS A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 TYR A 8 REMARK 465 SER A 9 REMARK 465 TYR A 10 REMARK 465 ALA A 11 REMARK 465 ILE A 12 REMARK 465 ALA A 13 REMARK 465 LYS A 14 REMARK 465 ASN A 15 REMARK 465 ASP A 16 REMARK 465 ARG A 17 REMARK 465 ILE A 18 REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 GLY A 22 REMARK 465 ALA A 23 REMARK 465 GLU A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 THR A 27 REMARK 465 THR A 28 REMARK 465 VAL A 29 REMARK 465 TRP A 30 REMARK 465 LYS A 31 REMARK 465 ASP A 32 REMARK 465 TYR A 33 REMARK 465 SER A 34 REMARK 465 PRO A 35 REMARK 465 GLU A 36 REMARK 465 MET A 37 REMARK 465 THR A 38 REMARK 465 LEU A 39 REMARK 465 GLU A 40 REMARK 465 ASP A 41 REMARK 465 THR A 42 REMARK 465 MET A 43 REMARK 465 VAL A 44 REMARK 465 ILE A 45 REMARK 465 ALA A 46 REMARK 465 SER A 47 REMARK 465 CYS A 48 REMARK 465 ARG A 49 REMARK 465 ASP A 50 REMARK 465 GLY A 51 REMARK 465 LYS A 52 REMARK 465 PHE A 53 REMARK 465 MET A 54 REMARK 465 TYR A 55 REMARK 465 LEU A 56 REMARK 465 SER A 57 REMARK 465 ARG A 58 REMARK 465 ARG A 64 REMARK 465 TYR A 65 REMARK 465 LEU A 66 REMARK 465 ALA A 67 REMARK 465 ILE A 68 REMARK 465 LEU A 69 REMARK 465 HIS A 70 REMARK 465 SER A 71 REMARK 465 ARG A 72 REMARK 465 ALA A 73 REMARK 465 LEU A 74 REMARK 465 PRO A 75 REMARK 465 THR A 76 REMARK 465 SER A 77 REMARK 465 VAL A 78 REMARK 465 VAL A 79 REMARK 465 PHE A 80 REMARK 465 LYS A 81 REMARK 465 LYS A 82 REMARK 465 LEU A 83 REMARK 465 PHE A 84 REMARK 465 GLU A 85 REMARK 465 GLY A 86 REMARK 465 GLU A 287 REMARK 465 GLY A 288 REMARK 465 PRO A 289 REMARK 465 VAL A 290 REMARK 465 GLU A 291 REMARK 465 LYS A 292 REMARK 465 THR A 293 REMARK 465 VAL A 332 REMARK 465 THR A 333 REMARK 465 ASP A 334 REMARK 465 GLY A 335 REMARK 465 THR A 336 REMARK 465 LYS A 337 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 CYS B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 GLU B 8 REMARK 465 ASP B 17 REMARK 465 ARG B 18 REMARK 465 ILE B 19 REMARK 465 GLY B 19A REMARK 465 GLY B 22 REMARK 465 ALA B 23 REMARK 465 GLU B 24 REMARK 465 GLY B 25 REMARK 465 VAL B 29 REMARK 465 TRP B 30 REMARK 465 LYS B 31 REMARK 465 ASP B 32 REMARK 465 TYR B 33 REMARK 465 SER B 34 REMARK 465 PRO B 35 REMARK 465 GLU B 36 REMARK 465 MET B 37 REMARK 465 THR B 38 REMARK 465 LEU B 39 REMARK 465 GLU B 40 REMARK 465 ALA B 46 REMARK 465 SER B 47 REMARK 465 CYS B 48 REMARK 465 ARG B 49 REMARK 465 ASP B 50 REMARK 465 GLY B 51 REMARK 465 LYS B 52 REMARK 465 PHE B 53 REMARK 465 MET B 54 REMARK 465 TYR B 55 REMARK 465 LEU B 56 REMARK 465 SER B 57 REMARK 465 ARG B 58 REMARK 465 TYR B 65 REMARK 465 LEU B 66 REMARK 465 ALA B 67 REMARK 465 ILE B 68 REMARK 465 LEU B 69 REMARK 465 HIS B 70 REMARK 465 SER B 71 REMARK 465 ARG B 72 REMARK 465 ALA B 73 REMARK 465 LEU B 74 REMARK 465 VAL B 79 REMARK 465 PHE B 80 REMARK 465 LYS B 81 REMARK 465 LYS B 82 REMARK 465 LEU B 83 REMARK 465 GLY B 288 REMARK 465 PRO B 289 REMARK 465 VAL B 290 REMARK 465 GLU B 291 REMARK 465 VAL B 332 REMARK 465 THR B 333 REMARK 465 ASP B 334 REMARK 465 GLY B 335 REMARK 465 THR B 336 REMARK 465 LYS B 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 100 -30.74 -130.60 REMARK 500 ASN A 186 -119.04 55.84 REMARK 500 LEU B 148 -2.59 76.64 REMARK 500 ASN B 186 -118.34 55.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YQ2 RELATED DB: PDB REMARK 900 STRUCTURE OF BVDV1 ENVELOPE GLYCOPROTEIN E2, PH8 REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATION: Y9S, G94E DBREF 2YQ3 A 1 337 PDB 2YQ3 2YQ3 1 337 DBREF 2YQ3 B 2 337 PDB 2YQ3 2YQ3 2 337 SEQRES 1 A 337 GLU THR GLY CYS LYS PRO GLU TYR SER TYR ALA ILE ALA SEQRES 2 A 337 LYS ASN ASP ARG ILE GLY PRO LEU GLY ALA GLU GLY LEU SEQRES 3 A 337 THR THR VAL TRP LYS ASP TYR SER PRO GLU MET THR LEU SEQRES 4 A 337 GLU ASP THR MET VAL ILE ALA SER CYS ARG ASP GLY LYS SEQRES 5 A 337 PHE MET TYR LEU SER ARG CYS THR ARG GLU THR ARG TYR SEQRES 6 A 337 LEU ALA ILE LEU HIS SER ARG ALA LEU PRO THR SER VAL SEQRES 7 A 337 VAL PHE LYS LYS LEU PHE GLU GLY GLN LYS GLN GLY ASP SEQRES 8 A 337 THR VAL GLU MET ASP ASP ASP PHE GLU PHE GLY LEU CYS SEQRES 9 A 337 PRO CYS ASP ALA LYS PRO ILE VAL ARG GLY LYS TYR ASN SEQRES 10 A 337 THR THR LEU LEU ASN GLY PRO ALA PHE GLN MET VAL CYS SEQRES 11 A 337 PRO ILE GLY TRP THR GLY THR VAL SER CYS MET LEU ALA SEQRES 12 A 337 ASN ARG ASP THR LEU ASP THR ALA VAL VAL ARG THR TYR SEQRES 13 A 337 ARG ARG SER ARG PRO PHE PRO TYR ARG GLN GLY CYS ILE SEQRES 14 A 337 THR GLN LYS VAL LEU GLY GLU ASP LEU TYR ASP CYS ILE SEQRES 15 A 337 LEU GLY GLY ASN TRP THR CYS VAL THR GLY ASP GLN LEU SEQRES 16 A 337 GLN TYR SER GLY GLY SER ILE GLU SER CYS LYS TRP CYS SEQRES 17 A 337 GLY PHE LYS PHE GLN ARG SER GLU GLY LEU PRO HIS TYR SEQRES 18 A 337 PRO ILE GLY LYS CYS ARG LEU LYS ASN GLU THR GLY TYR SEQRES 19 A 337 ARG LEU VAL ASP ASN THR SER CYS ASN ARG GLU GLY VAL SEQRES 20 A 337 ALA ILE VAL PRO GLN GLY THR VAL LYS CYS LYS ILE GLY SEQRES 21 A 337 ASP THR THR VAL GLN VAL ILE ALA LEU ASP THR LYS LEU SEQRES 22 A 337 GLY PRO MET PRO CYS LYS PRO TYR GLU ILE ILE SER SER SEQRES 23 A 337 GLU GLY PRO VAL GLU LYS THR ALA CYS THR PHE ASN TYR SEQRES 24 A 337 THR LYS THR LEU LYS ASN LYS TYR PHE GLU PRO ARG ASP SEQRES 25 A 337 SER TYR PHE GLN GLN TYR MET LEU LYS GLY GLU TYR GLN SEQRES 26 A 337 TYR TRP PHE ASP LEU GLU VAL THR ASP GLY THR LYS SEQRES 1 B 337 GLU THR GLY CYS LYS PRO GLU TYR SER TYR ALA ILE ALA SEQRES 2 B 337 LYS ASN ASP ARG ILE GLY PRO LEU GLY ALA GLU GLY LEU SEQRES 3 B 337 THR THR VAL TRP LYS ASP TYR SER PRO GLU MET THR LEU SEQRES 4 B 337 GLU ASP THR MET VAL ILE ALA SER CYS ARG ASP GLY LYS SEQRES 5 B 337 PHE MET TYR LEU SER ARG CYS THR ARG GLU THR ARG TYR SEQRES 6 B 337 LEU ALA ILE LEU HIS SER ARG ALA LEU PRO THR SER VAL SEQRES 7 B 337 VAL PHE LYS LYS LEU PHE GLU GLY GLN LYS GLN GLY ASP SEQRES 8 B 337 THR VAL GLU MET ASP ASP ASP PHE GLU PHE GLY LEU CYS SEQRES 9 B 337 PRO CYS ASP ALA LYS PRO ILE VAL ARG GLY LYS TYR ASN SEQRES 10 B 337 THR THR LEU LEU ASN GLY PRO ALA PHE GLN MET VAL CYS SEQRES 11 B 337 PRO ILE GLY TRP THR GLY THR VAL SER CYS MET LEU ALA SEQRES 12 B 337 ASN ARG ASP THR LEU ASP THR ALA VAL VAL ARG THR TYR SEQRES 13 B 337 ARG ARG SER ARG PRO PHE PRO TYR ARG GLN GLY CYS ILE SEQRES 14 B 337 THR GLN LYS VAL LEU GLY GLU ASP LEU TYR ASP CYS ILE SEQRES 15 B 337 LEU GLY GLY ASN TRP THR CYS VAL THR GLY ASP GLN LEU SEQRES 16 B 337 GLN TYR SER GLY GLY SER ILE GLU SER CYS LYS TRP CYS SEQRES 17 B 337 GLY PHE LYS PHE GLN ARG SER GLU GLY LEU PRO HIS TYR SEQRES 18 B 337 PRO ILE GLY LYS CYS ARG LEU LYS ASN GLU THR GLY TYR SEQRES 19 B 337 ARG LEU VAL ASP ASN THR SER CYS ASN ARG GLU GLY VAL SEQRES 20 B 337 ALA ILE VAL PRO GLN GLY THR VAL LYS CYS LYS ILE GLY SEQRES 21 B 337 ASP THR THR VAL GLN VAL ILE ALA LEU ASP THR LYS LEU SEQRES 22 B 337 GLY PRO MET PRO CYS LYS PRO TYR GLU ILE ILE SER SER SEQRES 23 B 337 GLU GLY PRO VAL GLU LYS THR ALA CYS THR PHE ASN TYR SEQRES 24 B 337 THR LYS THR LEU LYS ASN LYS TYR PHE GLU PRO ARG ASP SEQRES 25 B 337 SER TYR PHE GLN GLN TYR MET LEU LYS GLY GLU TYR GLN SEQRES 26 B 337 TYR TRP PHE ASP LEU GLU VAL THR ASP GLY THR LYS MODRES 2YQ3 ASN A 117 ASN GLYCOSYLATION SITE MODRES 2YQ3 ASN A 186 ASN GLYCOSYLATION SITE MODRES 2YQ3 ASN A 230 ASN GLYCOSYLATION SITE MODRES 2YQ3 ASN A 298 ASN GLYCOSYLATION SITE MODRES 2YQ3 ASN B 117 ASN GLYCOSYLATION SITE MODRES 2YQ3 ASN B 186 ASN GLYCOSYLATION SITE MODRES 2YQ3 ASN B 230 ASN GLYCOSYLATION SITE MODRES 2YQ3 ASN B 298 ASN GLYCOSYLATION SITE HET NAG A1000 14 HET NAG A1001 14 HET NAG A1002 14 HET NAG A1003 14 HET NAG B1000 14 HET NAG B1001 14 HET NAG B1002 14 HET NAG B1003 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 8(C8 H15 N O6) HELIX 1 1 PRO A 105 ALA A 108 5 4 HELIX 2 2 GLY A 185 CYS A 189 5 5 HELIX 3 3 PRO B 105 ALA B 108 5 4 HELIX 4 4 GLY B 185 CYS B 189 5 5 SHEET 1 AA 4 ASP A 91 GLU A 94 0 SHEET 2 AA 4 THR A 150 ARG A 158 1 O VAL A 153 N ASP A 91 SHEET 3 AA 4 GLY A 136 ALA A 143 -1 O GLY A 136 N ARG A 158 SHEET 4 AA 4 LYS A 109 GLY A 114 -1 O LYS A 109 N MET A 141 SHEET 1 AB 3 PHE A 101 LEU A 103 0 SHEET 2 AB 3 ALA A 125 MET A 128 -1 O PHE A 126 N GLY A 102 SHEET 3 AB 3 THR A 119 ASN A 122 -1 O LEU A 120 N GLN A 127 SHEET 1 AC 3 GLN A 171 LEU A 174 0 SHEET 2 AC 3 ASP A 177 LEU A 183 -1 O ASP A 177 N LEU A 174 SHEET 3 AC 3 VAL A 190 GLN A 194 -1 O VAL A 190 N ILE A 182 SHEET 1 AD 4 PHE A 210 PHE A 212 0 SHEET 2 AD 4 ILE A 202 TRP A 207 -1 O CYS A 205 N PHE A 212 SHEET 3 AD 4 LYS A 225 LEU A 228 -1 O LYS A 225 N LYS A 206 SHEET 4 AD 4 TYR A 234 LEU A 236 -1 O ARG A 235 N CYS A 226 SHEET 1 AE 4 VAL A 247 ILE A 249 0 SHEET 2 AE 4 THR A 262 ALA A 268 -1 O ILE A 267 N ALA A 248 SHEET 3 AE 4 VAL A 255 ILE A 259 -1 O VAL A 255 N VAL A 266 SHEET 4 AE 4 LYS A 279 PRO A 280 -1 O LYS A 279 N LYS A 258 SHEET 1 AF 2 GLY A 274 PRO A 275 0 SHEET 2 AF 2 LYS B 306 TYR B 307 1 N TYR B 307 O GLY A 274 SHEET 1 AG 4 ILE A 284 SER A 285 0 SHEET 2 AG 4 CYS B 295 LYS B 301 -1 O TYR B 299 N ILE A 284 SHEET 3 AG 4 TYR B 324 LEU B 330 -1 O GLN B 325 N THR B 300 SHEET 4 AG 4 MET B 319 LYS B 321 -1 O MET B 319 N TYR B 326 SHEET 1 AH 4 MET A 319 LYS A 321 0 SHEET 2 AH 4 TYR A 324 LEU A 330 -1 O TYR A 324 N LYS A 321 SHEET 3 AH 4 CYS A 295 LYS A 301 -1 O THR A 296 N ASP A 329 SHEET 4 AH 4 ILE B 284 SER B 285 -1 O ILE B 284 N TYR A 299 SHEET 1 AI 2 LYS A 306 TYR A 307 0 SHEET 2 AI 2 GLY B 274 PRO B 275 1 O GLY B 274 N TYR A 307 SHEET 1 BA 4 THR B 92 GLU B 94 0 SHEET 2 BA 4 THR B 150 ARG B 158 1 O THR B 155 N VAL B 93 SHEET 3 BA 4 GLY B 136 ALA B 143 -1 O GLY B 136 N ARG B 158 SHEET 4 BA 4 LYS B 109 GLY B 114 -1 O LYS B 109 N MET B 141 SHEET 1 BB 3 PHE B 101 LEU B 103 0 SHEET 2 BB 3 ALA B 125 MET B 128 -1 O PHE B 126 N GLY B 102 SHEET 3 BB 3 THR B 119 ASN B 122 -1 O LEU B 120 N GLN B 127 SHEET 1 BC 3 GLN B 171 LEU B 174 0 SHEET 2 BC 3 ASP B 177 LEU B 183 -1 O ASP B 177 N LEU B 174 SHEET 3 BC 3 VAL B 190 GLN B 194 -1 O VAL B 190 N ILE B 182 SHEET 1 BD 4 PHE B 210 PHE B 212 0 SHEET 2 BD 4 ILE B 202 TRP B 207 -1 O CYS B 205 N PHE B 212 SHEET 3 BD 4 LYS B 225 LEU B 228 -1 O LYS B 225 N LYS B 206 SHEET 4 BD 4 TYR B 234 LEU B 236 -1 O ARG B 235 N CYS B 226 SHEET 1 BE 5 ASN B 243 ARG B 244 0 SHEET 2 BE 5 VAL B 247 ILE B 249 -1 O VAL B 247 N ARG B 244 SHEET 3 BE 5 THR B 262 ALA B 268 -1 O ILE B 267 N ALA B 248 SHEET 4 BE 5 VAL B 255 ILE B 259 -1 O VAL B 255 N VAL B 266 SHEET 5 BE 5 LYS B 279 PRO B 280 -1 O LYS B 279 N LYS B 258 SSBOND 1 CYS A 59 CYS A 106 1555 1555 2.04 SSBOND 2 CYS A 104 CYS A 140 1555 1555 2.03 SSBOND 3 CYS A 130 CYS A 168 1555 1555 2.04 SSBOND 4 CYS A 181 CYS A 189 1555 1555 2.03 SSBOND 5 CYS A 205 CYS A 226 1555 1555 2.04 SSBOND 6 CYS A 208 CYS A 242 1555 1555 2.03 SSBOND 7 CYS A 257 CYS A 278 1555 1555 2.03 SSBOND 8 CYS A 295 CYS B 295 1555 1555 2.03 SSBOND 9 CYS B 59 CYS B 106 1555 1555 2.04 SSBOND 10 CYS B 104 CYS B 140 1555 1555 2.02 SSBOND 11 CYS B 130 CYS B 168 1555 1555 2.03 SSBOND 12 CYS B 181 CYS B 189 1555 1555 2.03 SSBOND 13 CYS B 205 CYS B 226 1555 1555 2.03 SSBOND 14 CYS B 208 CYS B 242 1555 1555 2.03 SSBOND 15 CYS B 257 CYS B 278 1555 1555 2.03 LINK ND2 ASN A 117 C1 NAG A1001 1555 1555 1.44 LINK ND2 ASN A 186 C1 NAG A1000 1555 1555 1.43 LINK ND2 ASN A 230 C1 NAG A1002 1555 1555 1.43 LINK ND2 ASN A 298 C1 NAG A1003 1555 1555 1.43 LINK ND2 ASN B 117 C1 NAG B1002 1555 1555 1.43 LINK ND2 ASN B 186 C1 NAG B1001 1555 1555 1.43 LINK ND2 ASN B 230 C1 NAG B1000 1555 1555 1.44 LINK ND2 ASN B 298 C1 NAG B1003 1555 1555 1.44 CISPEP 1 ARG A 145 ASP A 146 0 3.13 CISPEP 2 TYR A 221 PRO A 222 0 2.47 CISPEP 3 ARG A 244 GLU A 245 0 -2.38 CISPEP 4 THR B 191 GLY B 192 0 0.17 CISPEP 5 TYR B 221 PRO B 222 0 1.95 CRYST1 160.736 49.695 136.422 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006221 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007330 0.00000