data_2YQ6 # _entry.id 2YQ6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YQ6 pdb_00002yq6 10.2210/pdb2yq6/pdb PDBE EBI-54727 ? ? WWPDB D_1290054727 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2YQ7 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF BCL-XL BOUND TO BIMLOCK' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YQ6 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-11-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Smith, B.J.' 1 'Czabotar, P.E.' 2 # _citation.id primary _citation.title 'Stabilizing the Pro-Apoptotic Bimbh3 Helix (Bimsahb) Does not Necessarily Enhance Affinity or Biological Activity.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 8 _citation.page_first 297 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23151250 _citation.pdbx_database_id_DOI 10.1021/CB3005403 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Okamoto, T.' 1 ? primary 'Zobel, K.' 2 ? primary 'Fedorova, A.' 3 ? primary 'Quan, C.' 4 ? primary 'Yang, H.' 5 ? primary 'Fairbrother, W.J.' 6 ? primary 'Huang, D.C.S.' 7 ? primary 'Smith, B.J.' 8 ? primary 'Deshayes, K.' 9 ? primary 'Czabotar, P.E.' 10 ? # _cell.entry_id 2YQ6 _cell.length_a 73.736 _cell.length_b 35.336 _cell.length_c 61.412 _cell.angle_alpha 90.00 _cell.angle_beta 100.61 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YQ6 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BCL-2-LIKE PROTEIN 1' 17917.959 1 ? ? 'RESIDUES 1-26,83-209' ? 2 polymer syn 'BIM BETA 5' 2183.507 1 ? YES 'BH3 DOMAIN, RESIDUES 14-31' 'COVALENT LINKAGE BETWEEN SIDE CHAINS OF NON-NATURAL AMINO ACIDS AT POSITIONS 154 AND 158, JOINED THROUGH A METATHESIS REACTION.' 3 non-polymer syn GLYCEROL 92.094 7 ? ? ? ? 4 water nat water 18.015 74 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'BCL-XL, BCL2-L-1, APOPTOSIS REGULATOR BCL-X' 2 BIM # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER ; ;GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER ; A ? 2 'polypeptide(L)' no yes 'WIAQELR(MK8)IGD(MK8)FNAYYA(NH2)' WIAQELRLIGDLFNAYYAX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 MET n 1 7 SER n 1 8 GLN n 1 9 SER n 1 10 ASN n 1 11 ARG n 1 12 GLU n 1 13 LEU n 1 14 VAL n 1 15 VAL n 1 16 ASP n 1 17 PHE n 1 18 LEU n 1 19 SER n 1 20 TYR n 1 21 LYS n 1 22 LEU n 1 23 SER n 1 24 GLN n 1 25 LYS n 1 26 GLY n 1 27 TYR n 1 28 SER n 1 29 TRP n 1 30 SER n 1 31 GLN n 1 32 MET n 1 33 ALA n 1 34 ALA n 1 35 VAL n 1 36 LYS n 1 37 GLN n 1 38 ALA n 1 39 LEU n 1 40 ARG n 1 41 GLU n 1 42 ALA n 1 43 GLY n 1 44 ASP n 1 45 GLU n 1 46 PHE n 1 47 GLU n 1 48 LEU n 1 49 ARG n 1 50 TYR n 1 51 ARG n 1 52 ARG n 1 53 ALA n 1 54 PHE n 1 55 SER n 1 56 ASP n 1 57 LEU n 1 58 THR n 1 59 SER n 1 60 GLN n 1 61 LEU n 1 62 HIS n 1 63 ILE n 1 64 THR n 1 65 PRO n 1 66 GLY n 1 67 THR n 1 68 ALA n 1 69 TYR n 1 70 GLN n 1 71 SER n 1 72 PHE n 1 73 GLU n 1 74 GLN n 1 75 VAL n 1 76 VAL n 1 77 ASN n 1 78 GLU n 1 79 LEU n 1 80 PHE n 1 81 ARG n 1 82 ASP n 1 83 GLY n 1 84 VAL n 1 85 ASN n 1 86 TRP n 1 87 GLY n 1 88 ARG n 1 89 ILE n 1 90 VAL n 1 91 ALA n 1 92 PHE n 1 93 PHE n 1 94 SER n 1 95 PHE n 1 96 GLY n 1 97 GLY n 1 98 ALA n 1 99 LEU n 1 100 CYS n 1 101 VAL n 1 102 GLU n 1 103 SER n 1 104 VAL n 1 105 ASP n 1 106 LYS n 1 107 GLU n 1 108 MET n 1 109 GLN n 1 110 VAL n 1 111 LEU n 1 112 VAL n 1 113 SER n 1 114 ARG n 1 115 ILE n 1 116 ALA n 1 117 ALA n 1 118 TRP n 1 119 MET n 1 120 ALA n 1 121 THR n 1 122 TYR n 1 123 LEU n 1 124 ASN n 1 125 ASP n 1 126 HIS n 1 127 LEU n 1 128 GLU n 1 129 PRO n 1 130 TRP n 1 131 ILE n 1 132 GLN n 1 133 GLU n 1 134 ASN n 1 135 GLY n 1 136 GLY n 1 137 TRP n 1 138 ASP n 1 139 THR n 1 140 PHE n 1 141 VAL n 1 142 GLU n 1 143 LEU n 1 144 TYR n 1 145 GLY n 1 146 ASN n 1 147 ASN n 1 148 ALA n 1 149 ALA n 1 150 ALA n 1 151 GLU n 1 152 SER n 1 153 ARG n 1 154 LYS n 1 155 GLY n 1 156 GLN n 1 157 GLU n 1 158 ARG n 2 1 TRP n 2 2 ILE n 2 3 ALA n 2 4 GLN n 2 5 GLU n 2 6 LEU n 2 7 ARG n 2 8 MK8 n 2 9 ILE n 2 10 GLY n 2 11 ASP n 2 12 MK8 n 2 13 PHE n 2 14 ASN n 2 15 ALA n 2 16 TYR n 2 17 TYR n 2 18 ALA n 2 19 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PGEX-6P3 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP B2CL1_HUMAN 1 ? ? Q07817 ? 2 UNP Q6JTU4_HUMAN 2 ? ? O43521 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YQ6 A 6 ? 31 ? Q07817 1 ? 26 ? 1 26 2 1 2YQ6 A 32 ? 158 ? Q07817 83 ? 209 ? 83 209 3 2 2YQ6 B 1 ? 18 ? O43521 147 ? 164 ? 147 164 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YQ6 GLY A 1 ? UNP Q07817 ? ? 'expression tag' -4 1 1 2YQ6 PRO A 2 ? UNP Q07817 ? ? 'expression tag' -3 2 1 2YQ6 LEU A 3 ? UNP Q07817 ? ? 'expression tag' -2 3 1 2YQ6 GLY A 4 ? UNP Q07817 ? ? 'expression tag' -1 4 1 2YQ6 SER A 5 ? UNP Q07817 ? ? 'expression tag' 0 5 3 2YQ6 MK8 B 8 ? UNP Q6JTU4 ARG 21 'engineered mutation' 154 6 3 2YQ6 MK8 B 12 ? UNP Q6JTU4 GLU 25 'engineered mutation' 158 7 3 2YQ6 NH2 B 19 ? UNP Q6JTU4 ? ? amidation 165 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MK8 'L-peptide linking' n 2-methyl-L-norleucine ? 'C7 H15 N O2' 145.199 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YQ6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.87 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '15 % (W/V) PEG 400, 5 % PEG 3000, 10 % GLYCEROL AND 0.1 M MES PH 6.5.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-06-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979867 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_wavelength 0.979867 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YQ6 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.80 _reflns.number_obs 14372 _reflns.number_all ? _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30.90 _reflns.B_iso_Wilson_estimate 21.91 _reflns.pdbx_redundancy 6.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 85.0 _reflns_shell.Rmerge_I_obs 0.40 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.20 _reflns_shell.pdbx_redundancy 3.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YQ6 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14368 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.238 _refine.ls_d_res_high 1.799 _refine.ls_percent_reflns_obs 97.96 _refine.ls_R_factor_obs 0.1682 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1665 _refine.ls_R_factor_R_free 0.2010 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 719 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3FDL CHAIN A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.14 _refine.pdbx_overall_phase_error 21.88 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1311 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 1427 _refine_hist.d_res_high 1.799 _refine_hist.d_res_low 36.238 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1378 'X-RAY DIFFRACTION' ? f_angle_d 0.948 ? ? 1857 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.838 ? ? 488 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 188 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 235 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.7993 1.9383 2474 0.1992 90.00 0.2341 . . 135 . . 'X-RAY DIFFRACTION' . 1.9383 2.1333 2756 0.1667 100.00 0.2285 . . 137 . . 'X-RAY DIFFRACTION' . 2.1333 2.4419 2770 0.1495 100.00 0.1950 . . 144 . . 'X-RAY DIFFRACTION' . 2.4419 3.0763 2803 0.1659 100.00 0.1821 . . 145 . . 'X-RAY DIFFRACTION' . 3.0763 36.2452 2846 0.1681 100.00 0.2006 . . 158 . . # _struct.entry_id 2YQ6 _struct.title 'Structure of Bcl-xL bound to BimSAHB' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YQ6 _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'CONSTRAINED PEPTIDE, APOPTOSIS, BCL-2 FAMILY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? GLN A 24 ? GLY A -4 GLN A 19 1 ? 24 HELX_P HELX_P2 2 SER A 30 ? TYR A 50 ? SER A 25 TYR A 101 1 ? 21 HELX_P HELX_P3 3 TYR A 50 ? GLN A 60 ? TYR A 101 GLN A 111 1 ? 11 HELX_P HELX_P4 4 THR A 67 ? ARG A 81 ? THR A 118 ARG A 132 1 ? 15 HELX_P HELX_P5 5 ASN A 85 ? LYS A 106 ? ASN A 136 LYS A 157 1 ? 22 HELX_P HELX_P6 6 VAL A 110 ? LEU A 127 ? VAL A 161 LEU A 178 1 ? 18 HELX_P HELX_P7 7 LEU A 127 ? ASN A 134 ? LEU A 178 ASN A 185 1 ? 8 HELX_P HELX_P8 8 GLY A 135 ? GLY A 145 ? GLY A 186 GLY A 196 1 ? 11 HELX_P HELX_P9 9 TRP B 1 ? ALA B 18 ? TRP B 147 ALA B 164 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ARG 7 C ? ? ? 1_555 B MK8 8 N ? ? B ARG 153 B MK8 154 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? B MK8 8 C ? ? ? 1_555 B ILE 9 N ? ? B MK8 154 B ILE 155 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale none ? B MK8 8 CE ? ? ? 1_555 B MK8 12 CE ? ? B MK8 154 B MK8 158 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? B ASP 11 C ? ? ? 1_555 B MK8 12 N ? ? B ASP 157 B MK8 158 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? B MK8 12 C ? ? ? 1_555 B PHE 13 N ? ? B MK8 158 B PHE 159 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? B ALA 18 C ? ? ? 1_555 B NH2 19 N ? ? B ALA 164 B NH2 165 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 1197 ? 6 'BINDING SITE FOR RESIDUE GOL A 1197' AC2 Software A GOL 1198 ? 5 'BINDING SITE FOR RESIDUE GOL A 1198' AC3 Software A GOL 1199 ? 7 'BINDING SITE FOR RESIDUE GOL A 1199' AC4 Software A GOL 1200 ? 6 'BINDING SITE FOR RESIDUE GOL A 1200' AC5 Software A GOL 1201 ? 4 'BINDING SITE FOR RESIDUE GOL A 1201' AC6 Software A GOL 1202 ? 3 'BINDING SITE FOR RESIDUE GOL A 1202' AC7 Software B GOL 1000 ? 1 'BINDING SITE FOR RESIDUE GOL B 1000' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 82 ? ASP A 133 . ? 2_555 ? 2 AC1 6 ASN A 85 ? ASN A 136 . ? 1_555 ? 3 AC1 6 ARG A 88 ? ARG A 139 . ? 2_555 ? 4 AC1 6 HOH J . ? HOH A 2068 . ? 1_555 ? 5 AC1 6 ASP B 11 ? ASP B 157 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH B 2004 . ? 2_555 ? 7 AC2 5 ARG A 81 ? ARG A 132 . ? 2_555 ? 8 AC2 5 ASP A 82 ? ASP A 133 . ? 2_555 ? 9 AC2 5 ASN A 85 ? ASN A 136 . ? 1_555 ? 10 AC2 5 TRP A 86 ? TRP A 137 . ? 1_555 ? 11 AC2 5 ASN B 14 ? ASN B 160 . ? 1_555 ? 12 AC3 7 ASP A 16 ? ASP A 11 . ? 2_554 ? 13 AC3 7 TYR A 20 ? TYR A 15 . ? 1_555 ? 14 AC3 7 SER A 23 ? SER A 18 . ? 1_555 ? 15 AC3 7 GLN A 37 ? GLN A 88 . ? 1_555 ? 16 AC3 7 ARG A 40 ? ARG A 91 . ? 1_555 ? 17 AC3 7 ARG A 40 ? ARG A 91 . ? 2_554 ? 18 AC3 7 GOL F . ? GOL A 1200 . ? 1_555 ? 19 AC4 6 VAL A 15 ? VAL A 10 . ? 1_555 ? 20 AC4 6 SER A 19 ? SER A 14 . ? 1_555 ? 21 AC4 6 TRP A 29 ? TRP A 24 . ? 1_555 ? 22 AC4 6 SER A 30 ? SER A 25 . ? 1_555 ? 23 AC4 6 LYS A 36 ? LYS A 87 . ? 1_555 ? 24 AC4 6 GOL E . ? GOL A 1199 . ? 1_555 ? 25 AC5 4 ALA A 53 ? ALA A 104 . ? 1_545 ? 26 AC5 4 ASP A 125 ? ASP A 176 . ? 1_555 ? 27 AC5 4 GLU B 5 ? GLU B 151 . ? 1_545 ? 28 AC5 4 MK8 B 12 ? MK8 B 158 . ? 1_545 ? 29 AC6 3 SER A 23 ? SER A 18 . ? 1_555 ? 30 AC6 3 GLN A 37 ? GLN A 88 . ? 1_555 ? 31 AC6 3 GLU A 41 ? GLU A 92 . ? 1_555 ? 32 AC7 1 MK8 B 12 ? MK8 B 158 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YQ6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YQ6 _atom_sites.fract_transf_matrix[1][1] 0.013562 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002540 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028300 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016567 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 -4 GLY GLY A . n A 1 2 PRO 2 -3 -3 PRO PRO A . n A 1 3 LEU 3 -2 -2 LEU LEU A . n A 1 4 GLY 4 -1 -1 GLY GLY A . n A 1 5 SER 5 0 0 SER SER A . n A 1 6 MET 6 1 1 MET MET A . n A 1 7 SER 7 2 2 SER SER A . n A 1 8 GLN 8 3 3 GLN GLN A . n A 1 9 SER 9 4 4 SER SER A . n A 1 10 ASN 10 5 5 ASN ASN A . n A 1 11 ARG 11 6 6 ARG ARG A . n A 1 12 GLU 12 7 7 GLU GLU A . n A 1 13 LEU 13 8 8 LEU LEU A . n A 1 14 VAL 14 9 9 VAL VAL A . n A 1 15 VAL 15 10 10 VAL VAL A . n A 1 16 ASP 16 11 11 ASP ASP A . n A 1 17 PHE 17 12 12 PHE PHE A . n A 1 18 LEU 18 13 13 LEU LEU A . n A 1 19 SER 19 14 14 SER SER A . n A 1 20 TYR 20 15 15 TYR TYR A . n A 1 21 LYS 21 16 16 LYS LYS A . n A 1 22 LEU 22 17 17 LEU LEU A . n A 1 23 SER 23 18 18 SER SER A . n A 1 24 GLN 24 19 19 GLN GLN A . n A 1 25 LYS 25 20 20 LYS LYS A . n A 1 26 GLY 26 21 21 GLY GLY A . n A 1 27 TYR 27 22 22 TYR TYR A . n A 1 28 SER 28 23 23 SER SER A . n A 1 29 TRP 29 24 24 TRP TRP A . n A 1 30 SER 30 25 25 SER SER A . n A 1 31 GLN 31 26 26 GLN GLN A . n A 1 32 MET 32 83 83 MET MET A . n A 1 33 ALA 33 84 84 ALA ALA A . n A 1 34 ALA 34 85 85 ALA ALA A . n A 1 35 VAL 35 86 86 VAL VAL A . n A 1 36 LYS 36 87 87 LYS LYS A . n A 1 37 GLN 37 88 88 GLN GLN A . n A 1 38 ALA 38 89 89 ALA ALA A . n A 1 39 LEU 39 90 90 LEU LEU A . n A 1 40 ARG 40 91 91 ARG ARG A . n A 1 41 GLU 41 92 92 GLU GLU A . n A 1 42 ALA 42 93 93 ALA ALA A . n A 1 43 GLY 43 94 94 GLY GLY A . n A 1 44 ASP 44 95 95 ASP ASP A . n A 1 45 GLU 45 96 96 GLU GLU A . n A 1 46 PHE 46 97 97 PHE PHE A . n A 1 47 GLU 47 98 98 GLU GLU A . n A 1 48 LEU 48 99 99 LEU LEU A . n A 1 49 ARG 49 100 100 ARG ARG A . n A 1 50 TYR 50 101 101 TYR TYR A . n A 1 51 ARG 51 102 102 ARG ARG A . n A 1 52 ARG 52 103 103 ARG ARG A . n A 1 53 ALA 53 104 104 ALA ALA A . n A 1 54 PHE 54 105 105 PHE PHE A . n A 1 55 SER 55 106 106 SER SER A . n A 1 56 ASP 56 107 107 ASP ASP A . n A 1 57 LEU 57 108 108 LEU LEU A . n A 1 58 THR 58 109 109 THR THR A . n A 1 59 SER 59 110 110 SER SER A . n A 1 60 GLN 60 111 111 GLN GLN A . n A 1 61 LEU 61 112 112 LEU LEU A . n A 1 62 HIS 62 113 113 HIS HIS A . n A 1 63 ILE 63 114 114 ILE ILE A . n A 1 64 THR 64 115 115 THR THR A . n A 1 65 PRO 65 116 116 PRO PRO A . n A 1 66 GLY 66 117 117 GLY GLY A . n A 1 67 THR 67 118 118 THR THR A . n A 1 68 ALA 68 119 119 ALA ALA A . n A 1 69 TYR 69 120 120 TYR TYR A . n A 1 70 GLN 70 121 121 GLN GLN A . n A 1 71 SER 71 122 122 SER SER A . n A 1 72 PHE 72 123 123 PHE PHE A . n A 1 73 GLU 73 124 124 GLU GLU A . n A 1 74 GLN 74 125 125 GLN GLN A . n A 1 75 VAL 75 126 126 VAL VAL A . n A 1 76 VAL 76 127 127 VAL VAL A . n A 1 77 ASN 77 128 128 ASN ASN A . n A 1 78 GLU 78 129 129 GLU GLU A . n A 1 79 LEU 79 130 130 LEU LEU A . n A 1 80 PHE 80 131 131 PHE PHE A . n A 1 81 ARG 81 132 132 ARG ARG A . n A 1 82 ASP 82 133 133 ASP ASP A . n A 1 83 GLY 83 134 134 GLY GLY A . n A 1 84 VAL 84 135 135 VAL VAL A . n A 1 85 ASN 85 136 136 ASN ASN A . n A 1 86 TRP 86 137 137 TRP TRP A . n A 1 87 GLY 87 138 138 GLY GLY A . n A 1 88 ARG 88 139 139 ARG ARG A . n A 1 89 ILE 89 140 140 ILE ILE A . n A 1 90 VAL 90 141 141 VAL VAL A . n A 1 91 ALA 91 142 142 ALA ALA A . n A 1 92 PHE 92 143 143 PHE PHE A . n A 1 93 PHE 93 144 144 PHE PHE A . n A 1 94 SER 94 145 145 SER SER A . n A 1 95 PHE 95 146 146 PHE PHE A . n A 1 96 GLY 96 147 147 GLY GLY A . n A 1 97 GLY 97 148 148 GLY GLY A . n A 1 98 ALA 98 149 149 ALA ALA A . n A 1 99 LEU 99 150 150 LEU LEU A . n A 1 100 CYS 100 151 151 CYS CYS A . n A 1 101 VAL 101 152 152 VAL VAL A . n A 1 102 GLU 102 153 153 GLU GLU A . n A 1 103 SER 103 154 154 SER SER A . n A 1 104 VAL 104 155 155 VAL VAL A . n A 1 105 ASP 105 156 156 ASP ASP A . n A 1 106 LYS 106 157 157 LYS LYS A . n A 1 107 GLU 107 158 158 GLU GLU A . n A 1 108 MET 108 159 159 MET MET A . n A 1 109 GLN 109 160 160 GLN GLN A . n A 1 110 VAL 110 161 161 VAL VAL A . n A 1 111 LEU 111 162 162 LEU LEU A . n A 1 112 VAL 112 163 163 VAL VAL A . n A 1 113 SER 113 164 164 SER SER A . n A 1 114 ARG 114 165 165 ARG ARG A . n A 1 115 ILE 115 166 166 ILE ILE A . n A 1 116 ALA 116 167 167 ALA ALA A . n A 1 117 ALA 117 168 168 ALA ALA A . n A 1 118 TRP 118 169 169 TRP TRP A . n A 1 119 MET 119 170 170 MET MET A . n A 1 120 ALA 120 171 171 ALA ALA A . n A 1 121 THR 121 172 172 THR THR A . n A 1 122 TYR 122 173 173 TYR TYR A . n A 1 123 LEU 123 174 174 LEU LEU A . n A 1 124 ASN 124 175 175 ASN ASN A . n A 1 125 ASP 125 176 176 ASP ASP A . n A 1 126 HIS 126 177 177 HIS HIS A . n A 1 127 LEU 127 178 178 LEU LEU A . n A 1 128 GLU 128 179 179 GLU GLU A . n A 1 129 PRO 129 180 180 PRO PRO A . n A 1 130 TRP 130 181 181 TRP TRP A . n A 1 131 ILE 131 182 182 ILE ILE A . n A 1 132 GLN 132 183 183 GLN GLN A . n A 1 133 GLU 133 184 184 GLU GLU A . n A 1 134 ASN 134 185 185 ASN ASN A . n A 1 135 GLY 135 186 186 GLY GLY A . n A 1 136 GLY 136 187 187 GLY GLY A . n A 1 137 TRP 137 188 188 TRP TRP A . n A 1 138 ASP 138 189 189 ASP ASP A . n A 1 139 THR 139 190 190 THR THR A . n A 1 140 PHE 140 191 191 PHE PHE A . n A 1 141 VAL 141 192 192 VAL VAL A . n A 1 142 GLU 142 193 193 GLU GLU A . n A 1 143 LEU 143 194 194 LEU LEU A . n A 1 144 TYR 144 195 195 TYR TYR A . n A 1 145 GLY 145 196 196 GLY GLY A . n A 1 146 ASN 146 197 ? ? ? A . n A 1 147 ASN 147 198 ? ? ? A . n A 1 148 ALA 148 199 ? ? ? A . n A 1 149 ALA 149 200 ? ? ? A . n A 1 150 ALA 150 201 ? ? ? A . n A 1 151 GLU 151 202 ? ? ? A . n A 1 152 SER 152 203 ? ? ? A . n A 1 153 ARG 153 204 ? ? ? A . n A 1 154 LYS 154 205 ? ? ? A . n A 1 155 GLY 155 206 ? ? ? A . n A 1 156 GLN 156 207 ? ? ? A . n A 1 157 GLU 157 208 ? ? ? A . n A 1 158 ARG 158 209 ? ? ? A . n B 2 1 TRP 1 147 147 TRP TRP B . n B 2 2 ILE 2 148 148 ILE ILE B . n B 2 3 ALA 3 149 149 ALA ALA B . n B 2 4 GLN 4 150 150 GLN GLN B . n B 2 5 GLU 5 151 151 GLU GLU B . n B 2 6 LEU 6 152 152 LEU LEU B . n B 2 7 ARG 7 153 153 ARG ARG B . n B 2 8 MK8 8 154 154 MK8 MK8 B . n B 2 9 ILE 9 155 155 ILE ILE B . n B 2 10 GLY 10 156 156 GLY GLY B . n B 2 11 ASP 11 157 157 ASP ASP B . n B 2 12 MK8 12 158 158 MK8 MK8 B . n B 2 13 PHE 13 159 159 PHE PHE B . n B 2 14 ASN 14 160 160 ASN ASN B . n B 2 15 ALA 15 161 161 ALA ALA B . n B 2 16 TYR 16 162 162 TYR TYR B . n B 2 17 TYR 17 163 163 TYR TYR B . n B 2 18 ALA 18 164 164 ALA ALA B . n B 2 19 NH2 19 165 165 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 1197 1197 GOL GOL A . D 3 GOL 1 1198 1198 GOL GOL A . E 3 GOL 1 1199 1199 GOL GOL A . F 3 GOL 1 1200 1200 GOL GOL A . G 3 GOL 1 1201 1201 GOL GOL A . H 3 GOL 1 1202 1202 GOL GOL A . I 3 GOL 1 1000 1000 GOL GOL B . J 4 HOH 1 2001 2001 HOH HOH A . J 4 HOH 2 2002 2002 HOH HOH A . J 4 HOH 3 2003 2003 HOH HOH A . J 4 HOH 4 2004 2004 HOH HOH A . J 4 HOH 5 2005 2005 HOH HOH A . J 4 HOH 6 2006 2006 HOH HOH A . J 4 HOH 7 2007 2007 HOH HOH A . J 4 HOH 8 2008 2008 HOH HOH A . J 4 HOH 9 2009 2009 HOH HOH A . J 4 HOH 10 2010 2010 HOH HOH A . J 4 HOH 11 2011 2011 HOH HOH A . J 4 HOH 12 2012 2012 HOH HOH A . J 4 HOH 13 2013 2013 HOH HOH A . J 4 HOH 14 2014 2014 HOH HOH A . J 4 HOH 15 2015 2015 HOH HOH A . J 4 HOH 16 2016 2016 HOH HOH A . J 4 HOH 17 2017 2017 HOH HOH A . J 4 HOH 18 2018 2018 HOH HOH A . J 4 HOH 19 2019 2019 HOH HOH A . J 4 HOH 20 2020 2020 HOH HOH A . J 4 HOH 21 2021 2021 HOH HOH A . J 4 HOH 22 2022 2022 HOH HOH A . J 4 HOH 23 2023 2023 HOH HOH A . J 4 HOH 24 2024 2024 HOH HOH A . J 4 HOH 25 2025 2025 HOH HOH A . J 4 HOH 26 2026 2026 HOH HOH A . J 4 HOH 27 2027 2027 HOH HOH A . J 4 HOH 28 2028 2028 HOH HOH A . J 4 HOH 29 2029 2029 HOH HOH A . J 4 HOH 30 2030 2030 HOH HOH A . J 4 HOH 31 2031 2031 HOH HOH A . J 4 HOH 32 2032 2032 HOH HOH A . J 4 HOH 33 2033 2033 HOH HOH A . J 4 HOH 34 2034 2034 HOH HOH A . J 4 HOH 35 2035 2035 HOH HOH A . J 4 HOH 36 2036 2036 HOH HOH A . J 4 HOH 37 2037 2037 HOH HOH A . J 4 HOH 38 2038 2038 HOH HOH A . J 4 HOH 39 2039 2039 HOH HOH A . J 4 HOH 40 2040 2040 HOH HOH A . J 4 HOH 41 2041 2041 HOH HOH A . J 4 HOH 42 2042 2042 HOH HOH A . J 4 HOH 43 2043 2043 HOH HOH A . J 4 HOH 44 2044 2044 HOH HOH A . J 4 HOH 45 2045 2045 HOH HOH A . J 4 HOH 46 2046 2046 HOH HOH A . J 4 HOH 47 2047 2047 HOH HOH A . J 4 HOH 48 2048 2048 HOH HOH A . J 4 HOH 49 2049 2049 HOH HOH A . J 4 HOH 50 2050 2050 HOH HOH A . J 4 HOH 51 2051 2051 HOH HOH A . J 4 HOH 52 2052 2052 HOH HOH A . J 4 HOH 53 2053 2053 HOH HOH A . J 4 HOH 54 2054 2054 HOH HOH A . J 4 HOH 55 2055 2055 HOH HOH A . J 4 HOH 56 2056 2056 HOH HOH A . J 4 HOH 57 2057 2057 HOH HOH A . J 4 HOH 58 2058 2058 HOH HOH A . J 4 HOH 59 2059 2059 HOH HOH A . J 4 HOH 60 2060 2060 HOH HOH A . J 4 HOH 61 2061 2061 HOH HOH A . J 4 HOH 62 2062 2062 HOH HOH A . J 4 HOH 63 2063 2063 HOH HOH A . J 4 HOH 64 2064 2064 HOH HOH A . J 4 HOH 65 2065 2065 HOH HOH A . J 4 HOH 66 2066 2066 HOH HOH A . J 4 HOH 67 2067 2067 HOH HOH A . J 4 HOH 68 2068 2068 HOH HOH A . J 4 HOH 69 2069 2069 HOH HOH A . K 4 HOH 1 2001 2001 HOH HOH B . K 4 HOH 2 2002 2002 HOH HOH B . K 4 HOH 3 2003 2003 HOH HOH B . K 4 HOH 4 2004 2004 HOH HOH B . K 4 HOH 5 2005 2005 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B MK8 8 B MK8 154 ? LEU 2-METHYL-L-NORLEUCINE 2 B MK8 12 B MK8 158 ? LEU 2-METHYL-L-NORLEUCINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10790 ? 1 MORE -62.4 ? 1 'SSA (A^2)' 14970 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 11.3073556817 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -60.3620530755 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-28 2 'Structure model' 1 1 2013-02-27 3 'Structure model' 1 2 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.2964 -6.1875 -37.1980 0.1837 0.1729 0.1244 -0.0634 -0.0052 0.0228 6.0982 6.4386 1.5004 -4.5656 -1.8063 2.6026 0.0538 -0.2722 -0.3614 -0.0924 0.0417 0.2182 -0.0269 0.0639 -0.0798 'X-RAY DIFFRACTION' 2 ? refined 2.2919 3.7032 -21.2718 0.2430 0.1535 0.1627 0.0611 0.0351 0.0361 4.6368 3.8361 7.0642 3.4587 3.5775 4.9641 0.0823 0.1160 0.4557 -0.3393 -0.1477 0.2607 -0.4873 -0.1996 0.0377 'X-RAY DIFFRACTION' 3 ? refined 18.6121 7.2450 -11.1517 0.3859 0.4743 0.5340 -0.0418 0.0008 -0.0104 2.6839 2.9251 1.5496 0.7652 -1.1473 0.9029 -0.0218 0.1916 1.8267 0.4399 0.0039 -1.4491 -0.4107 0.5388 -0.0130 'X-RAY DIFFRACTION' 4 ? refined 8.9503 -4.0012 -11.9594 0.1281 0.0991 0.1024 0.0244 -0.0159 0.0126 3.1621 2.0830 3.5669 -0.1019 -1.5512 0.0097 -0.0284 -0.0834 -0.0901 0.0069 -0.0224 -0.1519 0.2229 0.2210 0.0431 'X-RAY DIFFRACTION' 5 ? refined 4.2752 8.0206 -6.9213 0.1778 0.1742 0.1853 0.0208 0.0031 0.0048 2.7929 7.9576 8.6840 -3.3475 3.8910 -1.2379 -0.1367 -0.1824 0.1935 0.4652 0.1018 -0.4853 0.0466 0.3513 -0.0069 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID -4 THROUGH 25 )' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 26 THROUGH 100 )' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 101 THROUGH 118 )' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 119 THROUGH 195 )' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? 'CHAIN B AND (RESID 147 THROUGH 164 )' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B TRP 147 ? CG ? B TRP 1 CG 2 1 Y 1 B TRP 147 ? CD1 ? B TRP 1 CD1 3 1 Y 1 B TRP 147 ? CD2 ? B TRP 1 CD2 4 1 Y 1 B TRP 147 ? NE1 ? B TRP 1 NE1 5 1 Y 1 B TRP 147 ? CE2 ? B TRP 1 CE2 6 1 Y 1 B TRP 147 ? CE3 ? B TRP 1 CE3 7 1 Y 1 B TRP 147 ? CZ2 ? B TRP 1 CZ2 8 1 Y 1 B TRP 147 ? CZ3 ? B TRP 1 CZ3 9 1 Y 1 B TRP 147 ? CH2 ? B TRP 1 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 197 ? A ASN 146 2 1 Y 1 A ASN 198 ? A ASN 147 3 1 Y 1 A ALA 199 ? A ALA 148 4 1 Y 1 A ALA 200 ? A ALA 149 5 1 Y 1 A ALA 201 ? A ALA 150 6 1 Y 1 A GLU 202 ? A GLU 151 7 1 Y 1 A SER 203 ? A SER 152 8 1 Y 1 A ARG 204 ? A ARG 153 9 1 Y 1 A LYS 205 ? A LYS 154 10 1 Y 1 A GLY 206 ? A GLY 155 11 1 Y 1 A GLN 207 ? A GLN 156 12 1 Y 1 A GLU 208 ? A GLU 157 13 1 Y 1 A ARG 209 ? A ARG 158 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 MK8 C C N N 264 MK8 N N N N 265 MK8 O O N N 266 MK8 CA C N S 267 MK8 CB C N N 268 MK8 CD C N N 269 MK8 CE C N N 270 MK8 CG C N N 271 MK8 CB1 C N N 272 MK8 OXT O N N 273 MK8 H H N N 274 MK8 H2 H N N 275 MK8 HB H N N 276 MK8 HBA H N N 277 MK8 HD H N N 278 MK8 HDA H N N 279 MK8 HE H N N 280 MK8 HEA H N N 281 MK8 HEB H N N 282 MK8 HG H N N 283 MK8 HGA H N N 284 MK8 HB1 H N N 285 MK8 HB1A H N N 286 MK8 HB1B H N N 287 MK8 HXT H N N 288 NH2 N N N N 289 NH2 HN1 H N N 290 NH2 HN2 H N N 291 PHE N N N N 292 PHE CA C N S 293 PHE C C N N 294 PHE O O N N 295 PHE CB C N N 296 PHE CG C Y N 297 PHE CD1 C Y N 298 PHE CD2 C Y N 299 PHE CE1 C Y N 300 PHE CE2 C Y N 301 PHE CZ C Y N 302 PHE OXT O N N 303 PHE H H N N 304 PHE H2 H N N 305 PHE HA H N N 306 PHE HB2 H N N 307 PHE HB3 H N N 308 PHE HD1 H N N 309 PHE HD2 H N N 310 PHE HE1 H N N 311 PHE HE2 H N N 312 PHE HZ H N N 313 PHE HXT H N N 314 PRO N N N N 315 PRO CA C N S 316 PRO C C N N 317 PRO O O N N 318 PRO CB C N N 319 PRO CG C N N 320 PRO CD C N N 321 PRO OXT O N N 322 PRO H H N N 323 PRO HA H N N 324 PRO HB2 H N N 325 PRO HB3 H N N 326 PRO HG2 H N N 327 PRO HG3 H N N 328 PRO HD2 H N N 329 PRO HD3 H N N 330 PRO HXT H N N 331 SER N N N N 332 SER CA C N S 333 SER C C N N 334 SER O O N N 335 SER CB C N N 336 SER OG O N N 337 SER OXT O N N 338 SER H H N N 339 SER H2 H N N 340 SER HA H N N 341 SER HB2 H N N 342 SER HB3 H N N 343 SER HG H N N 344 SER HXT H N N 345 THR N N N N 346 THR CA C N S 347 THR C C N N 348 THR O O N N 349 THR CB C N R 350 THR OG1 O N N 351 THR CG2 C N N 352 THR OXT O N N 353 THR H H N N 354 THR H2 H N N 355 THR HA H N N 356 THR HB H N N 357 THR HG1 H N N 358 THR HG21 H N N 359 THR HG22 H N N 360 THR HG23 H N N 361 THR HXT H N N 362 TRP N N N N 363 TRP CA C N S 364 TRP C C N N 365 TRP O O N N 366 TRP CB C N N 367 TRP CG C Y N 368 TRP CD1 C Y N 369 TRP CD2 C Y N 370 TRP NE1 N Y N 371 TRP CE2 C Y N 372 TRP CE3 C Y N 373 TRP CZ2 C Y N 374 TRP CZ3 C Y N 375 TRP CH2 C Y N 376 TRP OXT O N N 377 TRP H H N N 378 TRP H2 H N N 379 TRP HA H N N 380 TRP HB2 H N N 381 TRP HB3 H N N 382 TRP HD1 H N N 383 TRP HE1 H N N 384 TRP HE3 H N N 385 TRP HZ2 H N N 386 TRP HZ3 H N N 387 TRP HH2 H N N 388 TRP HXT H N N 389 TYR N N N N 390 TYR CA C N S 391 TYR C C N N 392 TYR O O N N 393 TYR CB C N N 394 TYR CG C Y N 395 TYR CD1 C Y N 396 TYR CD2 C Y N 397 TYR CE1 C Y N 398 TYR CE2 C Y N 399 TYR CZ C Y N 400 TYR OH O N N 401 TYR OXT O N N 402 TYR H H N N 403 TYR H2 H N N 404 TYR HA H N N 405 TYR HB2 H N N 406 TYR HB3 H N N 407 TYR HD1 H N N 408 TYR HD2 H N N 409 TYR HE1 H N N 410 TYR HE2 H N N 411 TYR HH H N N 412 TYR HXT H N N 413 VAL N N N N 414 VAL CA C N S 415 VAL C C N N 416 VAL O O N N 417 VAL CB C N N 418 VAL CG1 C N N 419 VAL CG2 C N N 420 VAL OXT O N N 421 VAL H H N N 422 VAL H2 H N N 423 VAL HA H N N 424 VAL HB H N N 425 VAL HG11 H N N 426 VAL HG12 H N N 427 VAL HG13 H N N 428 VAL HG21 H N N 429 VAL HG22 H N N 430 VAL HG23 H N N 431 VAL HXT H N N 432 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 MK8 C CA sing N N 250 MK8 C OXT sing N N 251 MK8 N H sing N N 252 MK8 N H2 sing N N 253 MK8 O C doub N N 254 MK8 CA N sing N N 255 MK8 CA CB sing N N 256 MK8 CB HB sing N N 257 MK8 CB HBA sing N N 258 MK8 CD CG sing N N 259 MK8 CD HD sing N N 260 MK8 CD HDA sing N N 261 MK8 CE CD sing N N 262 MK8 CE HE sing N N 263 MK8 CE HEA sing N N 264 MK8 CE HEB sing N N 265 MK8 CG CB sing N N 266 MK8 CG HG sing N N 267 MK8 CG HGA sing N N 268 MK8 CB1 CA sing N N 269 MK8 CB1 HB1 sing N N 270 MK8 CB1 HB1A sing N N 271 MK8 CB1 HB1B sing N N 272 MK8 OXT HXT sing N N 273 NH2 N HN1 sing N N 274 NH2 N HN2 sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3FDL _pdbx_initial_refinement_model.details 'PDB ENTRY 3FDL CHAIN A' #