HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAR-07 2YQY TITLE CRYSTAL STRUCTURE OF TT2238, A FOUR-HELIX BUNDLE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN TTHA0303; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TT2238; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A-TT2238 KEYWDS FOUR-HELIX-BUNDLE, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 2 FUNCTIONAL ANALYSES, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.NAGATA,J.OHTSUKA,H.IINO,A.EBIHARA,S.YOKOYAMA,S.KURAMITSU,M.TANOKURA REVDAT 5 13-MAR-24 2YQY 1 REMARK REVDAT 4 13-JUL-11 2YQY 1 VERSN REVDAT 3 24-FEB-09 2YQY 1 VERSN REVDAT 2 11-MAR-08 2YQY 1 REMARK REVDAT 1 04-MAR-08 2YQY 0 JRNL AUTH K.NAGATA,J.OHTSUKA,M.TAKAHASHI,A.ASANO,H.IINO,A.EBIHARA, JRNL AUTH 2 M.TANOKURA JRNL TITL CRYSTAL STRUCTURE OF TTHA0303 (TT2238), A FOUR-HELIX BUNDLE JRNL TITL 2 PROTEIN WITH AN EXPOSED HISTIDINE TRIAD FROM THERMUS JRNL TITL 3 THERMOPHILUS HB8 AT 2.0 A JRNL REF PROTEINS V. 70 1103 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18004771 JRNL DOI 10.1002/PROT.21765 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.182 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1946 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2644 ; 1.375 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 4.427 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;32.410 ;21.538 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 292 ;12.717 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1463 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 913 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1311 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.251 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914, 0.97950, 0.90000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : A FIXED EXIT SI DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR FOLLOWED BY A TWO REMARK 200 DIMENSIONAL FOCU SING MIRROR REMARK 200 WHICH IS COATED IN RHODIUM. REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.14200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V) PEG 1000, 100MM TRIS PH 7.0, REMARK 280 0.2M ZN ACETATE, MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.62700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.42300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.42300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.81350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.42300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.42300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.44050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.42300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.42300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 12.81350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.42300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.42300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.44050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 25.62700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1563 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12359 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.25400 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1396 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12011 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.25400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 194 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 TYR A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 73 REMARK 465 GLY A 74 REMARK 465 GLU A 75 REMARK 465 ASN A 76 REMARK 465 LEU A 77 REMARK 465 PRO A 78 REMARK 465 PRO A 79 REMARK 465 VAL A 80 REMARK 465 PRO A 81 REMARK 465 VAL A 82 REMARK 465 LYS A 83 REMARK 465 PRO A 84 REMARK 465 GLY A 85 REMARK 465 GLU A 86 REMARK 465 PHE A 87 REMARK 465 LYS A 88 REMARK 465 ASP A 89 REMARK 465 GLY A 90 REMARK 465 LYS A 91 REMARK 465 PRO A 92 REMARK 465 GLN A 93 REMARK 465 ALA A 94 REMARK 465 PRO A 95 REMARK 465 GLU A 96 REMARK 465 GLY A 97 REMARK 465 VAL A 98 REMARK 465 ARG A 99 REMARK 465 PRO A 100 REMARK 465 LYS A 101 REMARK 465 GLY A 102 REMARK 465 GLY A 103 REMARK 465 LEU A 167 REMARK 465 PRO A 168 REMARK 465 ARG A 169 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 LEU B 4 REMARK 465 GLU B 5 REMARK 465 ASP B 6 REMARK 465 TYR B 7 REMARK 465 GLY B 8 REMARK 465 LEU B 40 REMARK 465 ARG B 41 REMARK 465 GLU B 42 REMARK 465 GLY B 43 REMARK 465 GLY B 74 REMARK 465 GLU B 75 REMARK 465 ASN B 76 REMARK 465 LEU B 77 REMARK 465 PRO B 78 REMARK 465 PRO B 79 REMARK 465 VAL B 80 REMARK 465 PRO B 81 REMARK 465 VAL B 82 REMARK 465 LYS B 83 REMARK 465 PRO B 84 REMARK 465 GLY B 85 REMARK 465 GLU B 86 REMARK 465 PHE B 87 REMARK 465 LYS B 88 REMARK 465 ASP B 89 REMARK 465 GLY B 90 REMARK 465 LYS B 91 REMARK 465 PRO B 92 REMARK 465 GLN B 93 REMARK 465 ALA B 94 REMARK 465 PRO B 95 REMARK 465 GLU B 96 REMARK 465 GLY B 97 REMARK 465 VAL B 98 REMARK 465 ARG B 99 REMARK 465 PRO B 100 REMARK 465 LYS B 101 REMARK 465 GLY B 102 REMARK 465 GLY B 103 REMARK 465 PRO B 168 REMARK 465 ARG B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CD CE NZ REMARK 470 ALA A 34 CB REMARK 470 ARG A 41 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 42 CB CG CD OE1 OE2 REMARK 470 ALA A 72 CB REMARK 470 LEU A 104 CB CG CD1 CD2 REMARK 470 GLU A 107 CB CG CD OE1 OE2 REMARK 470 GLU A 108 CB CG CD OE1 OE2 REMARK 470 ARG A 115 CD NE CZ NH1 NH2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ALA A 151 CA REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 ARG B 16 O REMARK 470 GLU B 30 C CB CG CD OE1 OE2 REMARK 470 ASP B 32 CB CG OD1 OD2 REMARK 470 ALA B 34 CB REMARK 470 ALA B 38 CB REMARK 470 SER B 60 OG REMARK 470 ARG B 70 CD NE CZ NH1 NH2 REMARK 470 ALA B 73 CB REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 ARG B 115 CD NE CZ NH1 NH2 REMARK 470 GLN B 130 CB CG CD OE1 NE2 REMARK 470 SER B 166 CB OG REMARK 470 LEU B 167 C REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA B 34 N CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 34 54.14 -145.79 REMARK 500 PRO B 138 27.42 -63.68 REMARK 500 PHE B 139 -42.24 -168.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 34 TRP B 35 120.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 2YQY A 1 169 UNP Q5SLJ0 Q5SLJ0_THET8 1 169 DBREF 2YQY B 1 169 UNP Q5SLJ0 Q5SLJ0_THET8 1 169 SEQRES 1 A 169 MET VAL ARG LEU GLU ASP TYR GLY THR TRP ASP GLU ALA SEQRES 2 A 169 LEU LYS ARG LEU GLU ALA SER ARG LYS ALA LEU LEU ALA SEQRES 3 A 169 LEU LEU ARG GLU ALA ASP PRO ALA TRP LEU SER ALA PRO SEQRES 4 A 169 LEU ARG GLU GLY ALA TRP THR PRO LEU MET VAL ALA GLU SEQRES 5 A 169 HIS VAL ALA LEU VAL GLU ASP SER THR ALA ARG VAL LEU SEQRES 6 A 169 ARG ARG LEU ARG ARG LEU ALA ALA GLY GLU ASN LEU PRO SEQRES 7 A 169 PRO VAL PRO VAL LYS PRO GLY GLU PHE LYS ASP GLY LYS SEQRES 8 A 169 PRO GLN ALA PRO GLU GLY VAL ARG PRO LYS GLY GLY LEU SEQRES 9 A 169 SER LEU GLU GLU VAL LEU ALA LEU LEU ASP ARG ALA ARG SEQRES 10 A 169 ALA PHE LEU LEU GLU GLU VAL ALA LYS ALA ASP PRO GLN SEQRES 11 A 169 ASN PRO ALA THR PHE PRO HIS PRO PHE PHE GLY GLU LEU SEQRES 12 A 169 ASN PRO LEU GLY TRP LEU ARG ALA ALA ALA TYR HIS GLU SEQRES 13 A 169 ALA HIS HIS LEU LYS ALA LEU GLN ALA SER LEU PRO ARG SEQRES 1 B 169 MET VAL ARG LEU GLU ASP TYR GLY THR TRP ASP GLU ALA SEQRES 2 B 169 LEU LYS ARG LEU GLU ALA SER ARG LYS ALA LEU LEU ALA SEQRES 3 B 169 LEU LEU ARG GLU ALA ASP PRO ALA TRP LEU SER ALA PRO SEQRES 4 B 169 LEU ARG GLU GLY ALA TRP THR PRO LEU MET VAL ALA GLU SEQRES 5 B 169 HIS VAL ALA LEU VAL GLU ASP SER THR ALA ARG VAL LEU SEQRES 6 B 169 ARG ARG LEU ARG ARG LEU ALA ALA GLY GLU ASN LEU PRO SEQRES 7 B 169 PRO VAL PRO VAL LYS PRO GLY GLU PHE LYS ASP GLY LYS SEQRES 8 B 169 PRO GLN ALA PRO GLU GLY VAL ARG PRO LYS GLY GLY LEU SEQRES 9 B 169 SER LEU GLU GLU VAL LEU ALA LEU LEU ASP ARG ALA ARG SEQRES 10 B 169 ALA PHE LEU LEU GLU GLU VAL ALA LYS ALA ASP PRO GLN SEQRES 11 B 169 ASN PRO ALA THR PHE PRO HIS PRO PHE PHE GLY GLU LEU SEQRES 12 B 169 ASN PRO LEU GLY TRP LEU ARG ALA ALA ALA TYR HIS GLU SEQRES 13 B 169 ALA HIS HIS LEU LYS ALA LEU GLN ALA SER LEU PRO ARG FORMUL 3 HOH *73(H2 O) HELIX 1 1 THR A 9 ALA A 31 1 23 HELIX 2 2 ASP A 32 SER A 37 1 6 HELIX 3 3 THR A 46 ALA A 72 1 27 HELIX 4 4 SER A 105 ALA A 127 1 23 HELIX 5 5 ASN A 144 SER A 166 1 23 HELIX 6 6 THR B 9 GLU B 30 1 22 HELIX 7 7 THR B 46 ALA B 73 1 28 HELIX 8 8 SER B 105 ALA B 127 1 23 HELIX 9 9 ASN B 144 LEU B 167 1 24 SHEET 1 A 2 PHE A 135 HIS A 137 0 SHEET 2 A 2 GLY A 141 LEU A 143 -1 O GLY A 141 N HIS A 137 SHEET 1 B 2 PHE B 135 HIS B 137 0 SHEET 2 B 2 GLY B 141 LEU B 143 -1 O GLY B 141 N HIS B 137 CRYST1 104.846 104.846 51.254 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019511 0.00000