HEADER PROTEIN BINDING 02-APR-07 2YRA TITLE SOLUTION STRUCTURE OF THE ZINC FINGER DOMAINS (1-87) FROM HUMAN F-BOX TITLE 2 ONLY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEIZURE 6-LIKE PROTEIN ISOFORM 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CCP DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P050919-01; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS DISULFIDE BOND, SUSHI DOMAIN, SCR, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 4 BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YRA 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YRA 1 VERSN REVDAT 1 02-OCT-07 2YRA 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZINC FINGER DOMAINS (1-87) FROM JRNL TITL 2 HUMAN F-BOX ONLY PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YRA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027034. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.77MM UNIFORMLY 13C, 15N REMARK 210 -LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% NAN3, REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 745 170.29 -46.76 REMARK 500 1 PRO A 798 -165.28 -69.85 REMARK 500 1 GLU A 804 89.03 -68.87 REMARK 500 2 SER A 740 41.50 -83.94 REMARK 500 2 CYS A 745 150.56 -44.86 REMARK 500 2 LEU A 763 75.96 -69.47 REMARK 500 2 GLN A 788 -176.75 -61.50 REMARK 500 2 PRO A 798 -167.50 -69.79 REMARK 500 3 THR A 757 119.66 -161.14 REMARK 500 3 SER A 759 47.03 -92.96 REMARK 500 3 LEU A 763 102.18 -59.17 REMARK 500 3 LEU A 791 24.98 45.38 REMARK 500 3 ASP A 796 154.54 -46.43 REMARK 500 3 SER A 809 87.36 -54.20 REMARK 500 4 ASP A 747 150.13 -38.27 REMARK 500 4 SER A 759 42.98 -106.31 REMARK 500 4 LEU A 763 74.86 -62.71 REMARK 500 4 ARG A 765 139.52 -34.73 REMARK 500 4 SER A 795 -178.72 -175.06 REMARK 500 4 PRO A 798 -164.73 -69.79 REMARK 500 4 GLU A 804 42.03 -83.34 REMARK 500 4 PRO A 808 -179.12 -69.77 REMARK 500 5 CYS A 745 152.11 -37.51 REMARK 500 5 LEU A 763 101.53 -54.92 REMARK 500 5 ASP A 796 151.04 -44.93 REMARK 500 5 PRO A 798 -163.87 -69.74 REMARK 500 5 THR A 803 144.21 -39.92 REMARK 500 5 GLU A 805 58.07 -90.90 REMARK 500 6 CYS A 745 152.91 -40.23 REMARK 500 6 PRO A 749 -174.09 -69.77 REMARK 500 6 LEU A 763 82.04 -64.41 REMARK 500 6 ALA A 767 157.58 -46.77 REMARK 500 6 PRO A 798 -175.25 -69.70 REMARK 500 7 SER A 742 121.43 -172.00 REMARK 500 7 SER A 743 30.98 -93.35 REMARK 500 7 LEU A 763 53.56 33.27 REMARK 500 7 ARG A 765 137.82 -36.54 REMARK 500 7 ASP A 796 153.53 -37.84 REMARK 500 7 PRO A 798 -164.91 -69.76 REMARK 500 8 HIS A 760 157.47 -41.06 REMARK 500 8 THR A 761 -178.65 -54.78 REMARK 500 8 GLU A 762 161.08 -42.10 REMARK 500 8 LEU A 763 100.55 -53.73 REMARK 500 8 ARG A 765 108.11 -52.78 REMARK 500 8 PRO A 775 96.03 -69.68 REMARK 500 8 PRO A 798 -164.19 -69.75 REMARK 500 8 SER A 806 163.37 -43.87 REMARK 500 9 ASP A 747 155.45 -48.86 REMARK 500 9 SER A 759 43.81 -84.41 REMARK 500 9 GLU A 762 136.32 -35.03 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100904.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE IS Q9BYH1-4, ISOFORM 3. DBREF 2YRA A 745 805 UNP Q9BYH1 SEZ6L_HUMAN 745 805 SEQADV 2YRA GLY A 738 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA SER A 739 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA SER A 740 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA GLY A 741 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA SER A 742 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA SER A 743 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA GLY A 744 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA SER A 806 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA GLY A 807 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA PRO A 808 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA SER A 809 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA SER A 810 UNP Q9BYH1 EXPRESSION TAG SEQADV 2YRA GLY A 811 UNP Q9BYH1 EXPRESSION TAG SEQRES 1 A 74 GLY SER SER GLY SER SER GLY CYS SER ASP LEU PRO GLU SEQRES 2 A 74 ILE GLN ASN GLY TRP LYS THR THR SER HIS THR GLU LEU SEQRES 3 A 74 VAL ARG GLY ALA ARG ILE THR TYR GLN CYS ASP PRO GLY SEQRES 4 A 74 TYR ASP ILE VAL GLY SER ASP THR LEU THR CYS GLN TRP SEQRES 5 A 74 ASP LEU SER TRP SER SER ASP PRO PRO PHE CYS GLU LYS SEQRES 6 A 74 THR GLU GLU SER GLY PRO SER SER GLY SHEET 1 A 3 GLY A 754 LYS A 756 0 SHEET 2 A 3 ARG A 768 CYS A 773 -1 O GLN A 772 N TRP A 755 SHEET 3 A 3 THR A 784 THR A 786 -1 O LEU A 785 N ILE A 769 SHEET 1 B 2 TYR A 777 VAL A 780 0 SHEET 2 B 2 PHE A 799 LYS A 802 -1 O GLU A 801 N ASP A 778 SSBOND 1 CYS A 745 CYS A 787 1555 1555 2.02 SSBOND 2 CYS A 773 CYS A 800 1555 1555 2.09 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1