data_2YS1 # _entry.id 2YS1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YS1 pdb_00002ys1 10.2210/pdb2ys1/pdb RCSB RCSB027061 ? ? WWPDB D_1000027061 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsb001040670.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2YS1 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Sato, M.' 2 'Tochio, N.' 3 'Koshiba, S.' 4 'Watanabe, S.' 5 'Harada, T.' 6 'Kigawa, T.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structure of the PH domain of Dynamin-2 from human' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Sato, M.' 2 ? primary 'Tochio, N.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Watanabe, S.' 5 ? primary 'Harada, T.' 6 ? primary 'Kigawa, T.' 7 ? primary 'Yokoyama, S.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Dynamin-2 _entity.formula_weight 13077.794 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PH domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGVIRRGWLTINNISLMKGGSKEYWFVLTAESLSWYKDEEEKEKKYMLPLDNLKIRDVEKGFMSNKHVFAIFNTE QRNVYKDLRQIELACDSQEDVDSWKASFLRAGV ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGVIRRGWLTINNISLMKGGSKEYWFVLTAESLSWYKDEEEKEKKYMLPLDNLKIRDVEKGFMSNKHVFAIFNTE QRNVYKDLRQIELACDSQEDVDSWKASFLRAGV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsb001040670.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 VAL n 1 9 ILE n 1 10 ARG n 1 11 ARG n 1 12 GLY n 1 13 TRP n 1 14 LEU n 1 15 THR n 1 16 ILE n 1 17 ASN n 1 18 ASN n 1 19 ILE n 1 20 SER n 1 21 LEU n 1 22 MET n 1 23 LYS n 1 24 GLY n 1 25 GLY n 1 26 SER n 1 27 LYS n 1 28 GLU n 1 29 TYR n 1 30 TRP n 1 31 PHE n 1 32 VAL n 1 33 LEU n 1 34 THR n 1 35 ALA n 1 36 GLU n 1 37 SER n 1 38 LEU n 1 39 SER n 1 40 TRP n 1 41 TYR n 1 42 LYS n 1 43 ASP n 1 44 GLU n 1 45 GLU n 1 46 GLU n 1 47 LYS n 1 48 GLU n 1 49 LYS n 1 50 LYS n 1 51 TYR n 1 52 MET n 1 53 LEU n 1 54 PRO n 1 55 LEU n 1 56 ASP n 1 57 ASN n 1 58 LEU n 1 59 LYS n 1 60 ILE n 1 61 ARG n 1 62 ASP n 1 63 VAL n 1 64 GLU n 1 65 LYS n 1 66 GLY n 1 67 PHE n 1 68 MET n 1 69 SER n 1 70 ASN n 1 71 LYS n 1 72 HIS n 1 73 VAL n 1 74 PHE n 1 75 ALA n 1 76 ILE n 1 77 PHE n 1 78 ASN n 1 79 THR n 1 80 GLU n 1 81 GLN n 1 82 ARG n 1 83 ASN n 1 84 VAL n 1 85 TYR n 1 86 LYS n 1 87 ASP n 1 88 LEU n 1 89 ARG n 1 90 GLN n 1 91 ILE n 1 92 GLU n 1 93 LEU n 1 94 ALA n 1 95 CYS n 1 96 ASP n 1 97 SER n 1 98 GLN n 1 99 GLU n 1 100 ASP n 1 101 VAL n 1 102 ASP n 1 103 SER n 1 104 TRP n 1 105 LYS n 1 106 ALA n 1 107 SER n 1 108 PHE n 1 109 LEU n 1 110 ARG n 1 111 ALA n 1 112 GLY n 1 113 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene DNM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060904-04 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DYN2_HUMAN _struct_ref.pdbx_db_accession P50570 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VIRRGWLTINNISLMKGGSKEYWFVLTAESLSWYKDEEEKEKKYMLPLDNLKIRDVEKGFMSNKHVFAIFNTEQRNVYKD LRQIELACDSQEDVDSWKASFLRAGV ; _struct_ref.pdbx_align_begin 520 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YS1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P50570 _struct_ref_seq.db_align_beg 520 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 625 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 113 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YS1 GLY A 1 ? UNP P50570 ? ? 'expression tag' 1 1 1 2YS1 SER A 2 ? UNP P50570 ? ? 'expression tag' 2 2 1 2YS1 SER A 3 ? UNP P50570 ? ? 'expression tag' 3 3 1 2YS1 GLY A 4 ? UNP P50570 ? ? 'expression tag' 4 4 1 2YS1 SER A 5 ? UNP P50570 ? ? 'expression tag' 5 5 1 2YS1 SER A 6 ? UNP P50570 ? ? 'expression tag' 6 6 1 2YS1 GLY A 7 ? UNP P50570 ? ? 'expression tag' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.17mM PH domain U-15N,13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.entry_id 2YS1 _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.entry_id 2YS1 _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' _pdbx_nmr_representative.entry_id 2YS1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2YS1 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2YS1 _struct.title 'Solution structure of the PH domain of Dynamin-2 from human' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YS1 _struct_keywords.text ;PH domain, dynamin 2, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 98 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 111 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 98 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 111 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 49 ? LEU A 53 ? LYS A 49 LEU A 53 A 2 SER A 37 ? TYR A 41 ? SER A 37 TYR A 41 A 3 GLU A 28 ? THR A 34 ? GLU A 28 THR A 34 A 4 ARG A 10 ? ILE A 16 ? ARG A 10 ILE A 16 A 5 GLN A 90 ? ALA A 94 ? GLN A 90 ALA A 94 A 6 VAL A 73 ? ASN A 78 ? VAL A 73 ASN A 78 A 7 LEU A 58 ? ASP A 62 ? LEU A 58 ASP A 62 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 53 ? O LEU A 53 N LEU A 38 ? N LEU A 38 A 2 3 O TYR A 41 ? O TYR A 41 N TRP A 30 ? N TRP A 30 A 3 4 O LEU A 33 ? O LEU A 33 N ARG A 10 ? N ARG A 10 A 4 5 N THR A 15 ? N THR A 15 O ALA A 94 ? O ALA A 94 A 5 6 O LEU A 93 ? O LEU A 93 N PHE A 74 ? N PHE A 74 A 6 7 O PHE A 77 ? O PHE A 77 N LYS A 59 ? N LYS A 59 # _atom_sites.entry_id 2YS1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 MET 22 22 22 MET MET A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 TRP 30 30 30 TRP TRP A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 TRP 40 40 40 TRP TRP A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 TRP 104 104 104 TRP TRP A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 VAL 113 113 113 VAL VAL A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 8 ? ? -35.46 150.19 2 1 LYS A 47 ? ? -92.24 -67.34 3 1 PRO A 54 ? ? -69.78 -179.80 4 1 MET A 68 ? ? -172.43 134.99 5 1 GLU A 80 ? ? -88.87 30.79 6 1 GLN A 81 ? ? 38.24 47.60 7 2 ILE A 16 ? ? -68.78 83.18 8 2 ILE A 19 ? ? -40.79 102.65 9 2 LEU A 21 ? ? -35.09 123.71 10 2 MET A 22 ? ? -94.60 54.44 11 2 ALA A 35 ? ? -35.58 -33.61 12 2 THR A 79 ? ? -37.09 -28.56 13 2 GLU A 80 ? ? -83.56 32.67 14 2 GLN A 81 ? ? 34.01 39.22 15 2 ASN A 83 ? ? -47.67 165.20 16 2 VAL A 84 ? ? -127.40 -60.28 17 2 VAL A 101 ? ? -43.32 -70.32 18 3 SER A 6 ? ? -101.93 76.60 19 3 LEU A 21 ? ? -97.56 42.48 20 3 LYS A 27 ? ? -88.03 49.69 21 3 ASP A 56 ? ? -97.22 -60.05 22 3 GLU A 64 ? ? -104.50 55.03 23 3 PHE A 67 ? ? -48.01 153.33 24 3 LYS A 71 ? ? -52.34 -177.19 25 3 THR A 79 ? ? -53.45 176.66 26 4 SER A 6 ? ? -34.53 143.27 27 4 VAL A 8 ? ? -42.22 155.80 28 4 LYS A 23 ? ? -45.19 165.96 29 4 GLU A 44 ? ? -79.54 45.91 30 4 GLU A 46 ? ? 38.19 43.10 31 4 LYS A 71 ? ? -63.55 -176.23 32 4 ARG A 82 ? ? -44.03 160.59 33 4 LYS A 86 ? ? -48.36 -71.46 34 5 SER A 2 ? ? -35.07 130.39 35 5 VAL A 8 ? ? -36.50 148.87 36 5 ILE A 16 ? ? -58.09 89.08 37 5 MET A 22 ? ? -127.57 -56.00 38 5 SER A 26 ? ? -60.71 -175.78 39 5 ALA A 35 ? ? -49.61 -17.94 40 5 LYS A 50 ? ? -91.52 -68.54 41 5 SER A 69 ? ? -35.14 145.88 42 5 GLU A 80 ? ? -65.24 -178.37 43 6 SER A 3 ? ? -91.73 52.21 44 6 SER A 6 ? ? -171.56 114.83 45 6 VAL A 8 ? ? -39.59 135.72 46 6 ILE A 19 ? ? -133.34 -50.71 47 6 ASN A 57 ? ? -93.58 33.05 48 6 PHE A 67 ? ? -108.11 45.70 49 6 GLU A 80 ? ? -55.70 172.72 50 6 VAL A 84 ? ? -73.40 -74.30 51 7 LYS A 50 ? ? -83.93 -70.56 52 7 PHE A 67 ? ? 39.88 34.80 53 7 SER A 69 ? ? -161.14 118.64 54 8 ARG A 10 ? ? -173.50 146.80 55 8 SER A 20 ? ? -76.44 49.92 56 8 LEU A 21 ? ? 34.73 38.79 57 8 SER A 26 ? ? -43.30 154.38 58 8 LYS A 27 ? ? -84.63 40.38 59 8 GLU A 44 ? ? -85.75 30.99 60 8 TYR A 51 ? ? -168.63 117.48 61 8 PHE A 67 ? ? -48.90 167.74 62 8 MET A 68 ? ? -40.25 153.48 63 8 SER A 69 ? ? -43.62 156.50 64 8 GLU A 80 ? ? -59.17 -178.49 65 8 GLN A 81 ? ? -90.11 40.40 66 8 VAL A 84 ? ? -119.33 -75.12 67 8 GLN A 98 ? ? -37.20 -35.48 68 8 ASP A 102 ? ? -34.57 -38.46 69 9 SER A 2 ? ? -37.90 135.37 70 9 LYS A 23 ? ? -81.57 49.48 71 9 LYS A 50 ? ? -80.03 -70.02 72 9 GLU A 64 ? ? -104.39 46.65 73 9 GLU A 80 ? ? -84.75 37.61 74 9 GLN A 81 ? ? 36.82 30.37 75 10 SER A 5 ? ? -65.00 96.55 76 10 SER A 6 ? ? -37.13 147.38 77 10 SER A 26 ? ? -55.34 170.13 78 10 GLU A 44 ? ? -81.44 45.31 79 10 GLU A 46 ? ? 70.03 51.83 80 10 TYR A 51 ? ? -174.94 135.62 81 10 GLU A 64 ? ? -38.53 135.73 82 10 VAL A 84 ? ? -99.91 -65.78 83 10 VAL A 101 ? ? -40.72 -71.22 84 11 ILE A 16 ? ? -67.35 94.81 85 11 ASN A 18 ? ? -54.99 -70.48 86 11 ILE A 19 ? ? -51.46 106.21 87 11 MET A 22 ? ? -56.88 -179.70 88 11 LYS A 23 ? ? -36.70 141.57 89 11 LYS A 47 ? ? -104.22 -60.72 90 11 LYS A 50 ? ? -98.53 -65.80 91 11 LYS A 65 ? ? -162.46 108.93 92 11 LYS A 71 ? ? -45.91 169.90 93 11 GLU A 80 ? ? -54.97 -178.77 94 11 GLN A 81 ? ? -90.64 36.09 95 12 VAL A 8 ? ? -39.66 150.37 96 12 ASN A 18 ? ? -51.07 -73.00 97 12 TYR A 51 ? ? -173.38 148.99 98 12 GLN A 81 ? ? -76.96 49.26 99 12 VAL A 84 ? ? -45.73 -71.22 100 12 ASP A 87 ? ? -130.59 -49.35 101 13 SER A 2 ? ? -58.53 101.05 102 13 ILE A 19 ? ? -45.97 104.00 103 13 LYS A 23 ? ? -95.65 34.45 104 13 PRO A 54 ? ? -69.79 -177.50 105 13 ASN A 57 ? ? -92.37 32.99 106 13 GLN A 81 ? ? -88.05 43.74 107 14 VAL A 8 ? ? -34.91 150.00 108 14 ASN A 18 ? ? -56.29 -70.95 109 14 ILE A 19 ? ? -44.91 151.59 110 14 MET A 22 ? ? -57.52 170.13 111 14 LYS A 23 ? ? -41.38 106.67 112 14 ASN A 57 ? ? -92.22 34.97 113 14 GLU A 64 ? ? 31.63 43.05 114 14 PHE A 67 ? ? 37.61 53.87 115 14 ASN A 70 ? ? -170.80 132.82 116 14 GLU A 80 ? ? -95.58 32.60 117 14 GLN A 81 ? ? 34.35 42.69 118 15 ARG A 10 ? ? -174.08 143.42 119 15 ASN A 18 ? ? -37.26 -72.84 120 15 ILE A 19 ? ? -43.85 154.59 121 15 LYS A 27 ? ? -114.14 61.50 122 15 GLU A 64 ? ? -35.29 133.72 123 15 LYS A 65 ? ? -107.31 58.06 124 15 LYS A 71 ? ? -55.73 -179.75 125 15 ASP A 87 ? ? -130.02 -34.38 126 16 SER A 5 ? ? -52.99 173.95 127 16 SER A 6 ? ? 37.05 41.61 128 16 VAL A 8 ? ? -38.71 138.83 129 16 ILE A 16 ? ? -66.81 90.67 130 16 ASN A 18 ? ? -34.34 -70.52 131 16 ILE A 19 ? ? -36.59 137.75 132 16 SER A 20 ? ? -39.22 159.23 133 16 GLU A 36 ? ? -94.79 -62.75 134 16 LYS A 59 ? ? -170.22 145.43 135 16 GLU A 80 ? ? -62.33 -176.88 136 17 VAL A 8 ? ? -34.70 148.50 137 17 ILE A 19 ? ? -55.64 83.15 138 17 SER A 20 ? ? -60.32 -175.31 139 17 LYS A 23 ? ? -64.00 97.76 140 17 LYS A 71 ? ? -35.75 143.73 141 17 GLN A 81 ? ? -64.51 79.05 142 18 ILE A 16 ? ? -63.09 87.89 143 18 SER A 20 ? ? -40.21 153.11 144 18 MET A 22 ? ? 34.07 34.88 145 18 LYS A 23 ? ? -34.79 126.49 146 18 PRO A 54 ? ? -69.82 -178.88 147 18 HIS A 72 ? ? -65.79 91.31 148 18 LYS A 86 ? ? -40.50 -71.80 149 19 ILE A 16 ? ? -56.91 93.24 150 19 MET A 22 ? ? -78.72 -71.89 151 19 LYS A 23 ? ? -46.55 171.19 152 19 LYS A 50 ? ? -91.85 -69.76 153 19 ASN A 57 ? ? -96.45 33.10 154 19 SER A 69 ? ? -39.07 124.68 155 19 LYS A 71 ? ? -37.89 152.44 156 20 SER A 3 ? ? -58.97 95.90 157 20 VAL A 8 ? ? -39.97 138.75 158 20 ASN A 18 ? ? -34.46 -71.11 159 20 ILE A 19 ? ? -44.15 150.64 160 20 VAL A 63 ? ? -42.02 158.45 161 20 GLN A 81 ? ? -57.77 95.42 #