data_2YS4 # _entry.id 2YS4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YS4 pdb_00002ys4 10.2210/pdb2ys4/pdb RCSB RCSB027064 ? ? WWPDB D_1000027064 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002011753.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2YS4 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Tomizawa, T.' 2 'Koshiba, S.' 3 'Watanabe, S.' 4 'Harada, T.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the N-terminal PapD-like domain of HYDIN protein from human' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Tomizawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Watanabe, S.' 4 ? primary 'Harada, T.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Hydrocephalus-inducing protein homolog' _entity.formula_weight 13340.253 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PapD-like, UNP residues 182-296' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGTEREKFIVPIKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVGE SMQLEVEFEPQSVGDHSGRLIVCYDTGEKVFVSLYGAAIDMN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGTEREKFIVPIKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVGE SMQLEVEFEPQSVGDHSGRLIVCYDTGEKVFVSLYGAAIDMN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002011753.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 THR n 1 9 GLU n 1 10 ARG n 1 11 GLU n 1 12 LYS n 1 13 PHE n 1 14 ILE n 1 15 VAL n 1 16 PRO n 1 17 ILE n 1 18 LYS n 1 19 ALA n 1 20 ARG n 1 21 GLY n 1 22 ALA n 1 23 ARG n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 ASP n 1 28 PHE n 1 29 PRO n 1 30 ASP n 1 31 LYS n 1 32 LEU n 1 33 ASN n 1 34 PHE n 1 35 SER n 1 36 THR n 1 37 CYS n 1 38 PRO n 1 39 VAL n 1 40 LYS n 1 41 TYR n 1 42 SER n 1 43 THR n 1 44 GLN n 1 45 LYS n 1 46 ILE n 1 47 LEU n 1 48 LEU n 1 49 VAL n 1 50 ARG n 1 51 ASN n 1 52 ILE n 1 53 GLY n 1 54 ASN n 1 55 LYS n 1 56 ASN n 1 57 ALA n 1 58 VAL n 1 59 PHE n 1 60 HIS n 1 61 ILE n 1 62 LYS n 1 63 THR n 1 64 CYS n 1 65 ARG n 1 66 PRO n 1 67 PHE n 1 68 SER n 1 69 ILE n 1 70 GLU n 1 71 PRO n 1 72 ALA n 1 73 ILE n 1 74 GLY n 1 75 THR n 1 76 LEU n 1 77 ASN n 1 78 VAL n 1 79 GLY n 1 80 GLU n 1 81 SER n 1 82 MET n 1 83 GLN n 1 84 LEU n 1 85 GLU n 1 86 VAL n 1 87 GLU n 1 88 PHE n 1 89 GLU n 1 90 PRO n 1 91 GLN n 1 92 SER n 1 93 VAL n 1 94 GLY n 1 95 ASP n 1 96 HIS n 1 97 SER n 1 98 GLY n 1 99 ARG n 1 100 LEU n 1 101 ILE n 1 102 VAL n 1 103 CYS n 1 104 TYR n 1 105 ASP n 1 106 THR n 1 107 GLY n 1 108 GLU n 1 109 LYS n 1 110 VAL n 1 111 PHE n 1 112 VAL n 1 113 SER n 1 114 LEU n 1 115 TYR n 1 116 GLY n 1 117 ALA n 1 118 ALA n 1 119 ILE n 1 120 ASP n 1 121 MET n 1 122 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene HYDIN _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060327-16 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HYDIN_HUMAN _struct_ref.pdbx_db_accession Q4G0P3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TEREKFIVPIKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVGESMQLEVE FEPQSVGDHSGRLIVCYDTGEKVFVSLYGAAIDMN ; _struct_ref.pdbx_align_begin 182 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YS4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 122 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q4G0P3 _struct_ref_seq.db_align_beg 182 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 296 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 122 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YS4 GLY A 1 ? UNP Q4G0P3 ? ? 'expression tag' 1 1 1 2YS4 SER A 2 ? UNP Q4G0P3 ? ? 'expression tag' 2 2 1 2YS4 SER A 3 ? UNP Q4G0P3 ? ? 'expression tag' 3 3 1 2YS4 GLY A 4 ? UNP Q4G0P3 ? ? 'expression tag' 4 4 1 2YS4 SER A 5 ? UNP Q4G0P3 ? ? 'expression tag' 5 5 1 2YS4 SER A 6 ? UNP Q4G0P3 ? ? 'expression tag' 6 6 1 2YS4 GLY A 7 ? UNP Q4G0P3 ? ? 'expression tag' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.19mM sample U-15N,13C PapD-like domain; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.entry_id 2YS4 _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.entry_id 2YS4 _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' _pdbx_nmr_representative.entry_id 2YS4 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2YS4 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2YS4 _struct.title 'Solution structure of the N-terminal PapD-like domain of HYDIN protein from human' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YS4 _struct_keywords.text ;HYDIN, PapD-like, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL GENOMICS, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 1 0.00 2 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 1 -0.01 3 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 2 -0.01 4 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 2 0.03 5 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 3 -0.01 6 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 3 0.04 7 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 4 -0.01 8 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 4 0.03 9 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 5 -0.02 10 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 5 0.03 11 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 6 0.04 12 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 6 0.05 13 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 7 -0.02 14 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 7 0.03 15 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 8 0.05 16 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 8 0.03 17 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 9 -0.02 18 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 9 0.02 19 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 10 -0.02 20 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 10 0.05 21 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 11 0.03 22 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 11 0.00 23 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 12 -0.01 24 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 12 -0.02 25 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 13 0.07 26 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 13 -0.04 27 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 14 -0.04 28 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 14 0.00 29 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 15 -0.03 30 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 15 0.04 31 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 16 -0.08 32 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 16 0.06 33 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 17 0.05 34 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 17 0.05 35 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 18 0.02 36 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 18 0.06 37 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 19 0.07 38 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 19 0.03 39 ARG 65 A . ? ARG 65 A PRO 66 A ? PRO 66 A 20 -0.01 40 GLU 70 A . ? GLU 70 A PRO 71 A ? PRO 71 A 20 -0.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 3 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 31 ? ASN A 33 ? LYS A 31 ASN A 33 A 2 SER A 113 ? TYR A 115 ? SER A 113 TYR A 115 B 1 CYS A 37 ? PRO A 38 ? CYS A 37 PRO A 38 B 2 ALA A 118 ? ILE A 119 ? ALA A 118 ILE A 119 C 1 THR A 43 ? ARG A 50 ? THR A 43 ARG A 50 C 2 SER A 81 ? PHE A 88 ? SER A 81 PHE A 88 C 3 PHE A 67 ? GLU A 70 ? PHE A 67 GLU A 70 D 1 ILE A 73 ? LEU A 76 ? ILE A 73 LEU A 76 D 2 ALA A 57 ? LYS A 62 ? ALA A 57 LYS A 62 D 3 SER A 97 ? TYR A 104 ? SER A 97 TYR A 104 D 4 LYS A 109 ? TYR A 115 ? LYS A 109 TYR A 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 32 ? N LEU A 32 O SER A 113 ? O SER A 113 B 1 2 N CYS A 37 ? N CYS A 37 O ILE A 119 ? O ILE A 119 C 1 2 N THR A 43 ? N THR A 43 O PHE A 88 ? O PHE A 88 C 2 3 O GLU A 87 ? O GLU A 87 N SER A 68 ? N SER A 68 D 1 2 O LEU A 76 ? O LEU A 76 N ALA A 57 ? N ALA A 57 D 2 3 N HIS A 60 ? N HIS A 60 O CYS A 103 ? O CYS A 103 D 3 4 N VAL A 102 ? N VAL A 102 O VAL A 110 ? O VAL A 110 # _atom_sites.entry_id 2YS4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 MET 121 121 121 MET MET A . n A 1 122 ASN 122 122 122 ASN ASN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 35 ? ? -51.98 175.22 2 1 THR A 36 ? ? -52.80 106.17 3 1 PRO A 66 ? ? -69.74 0.04 4 1 PRO A 90 ? ? -69.75 90.22 5 1 MET A 121 ? ? -37.47 -28.13 6 2 SER A 35 ? ? -52.05 176.17 7 2 THR A 36 ? ? -52.07 107.38 8 2 PRO A 90 ? ? -69.76 86.37 9 2 ALA A 117 ? ? -52.00 107.14 10 3 SER A 35 ? ? -52.53 178.43 11 3 PRO A 66 ? ? -69.77 0.30 12 3 ALA A 117 ? ? -51.86 102.12 13 4 SER A 35 ? ? -52.04 178.63 14 4 THR A 36 ? ? -52.05 106.38 15 4 PRO A 66 ? ? -69.77 3.55 16 4 PRO A 90 ? ? -69.79 86.91 17 4 ALA A 117 ? ? -52.08 105.43 18 5 SER A 35 ? ? -52.02 170.28 19 5 TYR A 41 ? ? -51.99 172.93 20 5 ALA A 117 ? ? -51.98 104.24 21 6 SER A 35 ? ? -52.12 174.64 22 6 THR A 36 ? ? -52.04 106.05 23 6 ASN A 54 ? ? -97.91 -65.44 24 6 LYS A 55 ? ? -97.83 -68.82 25 6 PRO A 90 ? ? -69.79 -174.93 26 6 ALA A 117 ? ? -52.03 106.88 27 7 SER A 35 ? ? -51.98 178.13 28 7 THR A 36 ? ? -52.00 107.47 29 7 PRO A 66 ? ? -69.79 0.54 30 7 PRO A 90 ? ? -69.80 86.92 31 7 ALA A 117 ? ? -52.00 109.27 32 8 PRO A 16 ? ? -69.79 -179.89 33 8 SER A 35 ? ? -52.82 173.80 34 8 ALA A 117 ? ? -52.12 104.09 35 8 ASP A 120 ? ? -55.05 109.40 36 9 SER A 35 ? ? -51.99 177.21 37 9 ALA A 117 ? ? -51.99 102.03 38 10 PRO A 16 ? ? -69.69 -174.85 39 10 SER A 35 ? ? -52.04 178.75 40 11 SER A 35 ? ? -51.67 177.37 41 11 THR A 36 ? ? -53.89 108.46 42 11 ALA A 117 ? ? -51.97 102.00 43 12 SER A 35 ? ? -51.99 172.18 44 12 THR A 36 ? ? -52.08 104.71 45 12 PRO A 90 ? ? -69.73 -174.55 46 12 ALA A 117 ? ? -52.22 102.04 47 13 ARG A 10 ? ? -58.81 109.72 48 13 SER A 35 ? ? -52.68 178.50 49 13 PRO A 66 ? ? -69.84 0.77 50 13 ALA A 117 ? ? -52.60 102.42 51 14 SER A 35 ? ? -52.26 173.73 52 14 ALA A 117 ? ? -52.03 106.99 53 15 GLU A 11 ? ? -52.10 175.23 54 15 SER A 35 ? ? -52.02 175.24 55 15 ALA A 117 ? ? -52.00 104.35 56 16 SER A 35 ? ? -51.97 176.33 57 16 PRO A 66 ? ? -69.67 1.21 58 16 ALA A 117 ? ? -52.09 102.21 59 17 SER A 35 ? ? -51.19 178.68 60 17 ALA A 117 ? ? -52.02 102.01 61 18 SER A 35 ? ? -32.64 -70.37 62 18 ASN A 56 ? ? -52.09 109.80 63 18 PRO A 90 ? ? -69.75 79.56 64 18 ALA A 117 ? ? -51.97 103.80 65 19 PRO A 16 ? ? -69.80 -169.89 66 19 SER A 35 ? ? -51.93 173.86 67 19 ALA A 117 ? ? -51.94 102.05 68 19 ASP A 120 ? ? -49.81 -17.00 69 20 SER A 35 ? ? -52.16 173.77 70 20 PRO A 90 ? ? -69.75 77.37 71 20 ALA A 117 ? ? -51.98 106.95 72 20 MET A 121 ? ? -39.37 -25.75 #