HEADER TRANSCRIPTION 05-APR-07 2YTC TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN PRE-MRNA-SPLICING FACTOR TITLE 2 RBM22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR RBM22; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA BINDING MOTIF; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 22, ZINC FINGER CCCH DOMAIN- COMPND 6 CONTAINING PROTEIN 16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM22; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060313-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KASAHARA,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YTC 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YTC 1 VERSN REVDAT 1 09-OCT-07 2YTC 0 JRNL AUTH N.KASAHARA,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN JRNL TITL 2 PRE-MRNA-SPLICING FACTOR RBM22 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YTC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027108. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE REMARK 210 DYNAMICS,RESTRAINTED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 234 42.25 -109.98 REMARK 500 1 LYS A 236 -66.89 -93.36 REMARK 500 1 GLN A 275 43.94 34.25 REMARK 500 1 ARG A 284 -36.95 -36.72 REMARK 500 1 PHE A 295 97.07 -47.86 REMARK 500 1 ASN A 296 25.50 45.17 REMARK 500 2 SER A 229 41.90 38.60 REMARK 500 2 LYS A 236 89.43 -63.03 REMARK 500 2 THR A 237 31.05 38.44 REMARK 500 2 GLN A 275 51.09 33.04 REMARK 500 2 ARG A 284 -35.31 -36.13 REMARK 500 2 PHE A 295 109.42 -55.10 REMARK 500 2 LYS A 297 -38.43 -130.96 REMARK 500 3 ARG A 256 -38.67 -39.72 REMARK 500 3 GLN A 275 46.90 34.37 REMARK 500 3 ARG A 284 -34.54 -36.90 REMARK 500 3 ASN A 296 25.03 40.51 REMARK 500 3 LEU A 298 96.52 -61.82 REMARK 500 4 SER A 228 83.50 -66.98 REMARK 500 4 GLU A 234 90.31 -63.50 REMARK 500 4 TYR A 260 -36.19 -39.93 REMARK 500 4 GLN A 275 47.91 35.15 REMARK 500 4 ARG A 284 -35.69 -37.88 REMARK 500 4 PHE A 295 103.11 -57.00 REMARK 500 4 ASN A 296 27.69 42.13 REMARK 500 5 SER A 229 42.25 -104.66 REMARK 500 5 THR A 237 36.80 37.51 REMARK 500 5 GLN A 275 47.37 33.63 REMARK 500 5 PHE A 295 109.47 -50.35 REMARK 500 5 LYS A 297 -33.69 -133.71 REMARK 500 5 LEU A 298 98.30 -67.62 REMARK 500 6 SER A 231 108.99 -166.88 REMARK 500 6 THR A 239 35.39 -95.35 REMARK 500 6 TYR A 260 -35.67 -39.92 REMARK 500 6 ARG A 284 -39.62 -38.29 REMARK 500 6 ASN A 296 26.16 40.18 REMARK 500 7 THR A 239 36.19 -97.57 REMARK 500 7 GLN A 275 50.45 32.26 REMARK 500 7 ARG A 284 -34.20 -36.31 REMARK 500 7 PHE A 295 109.79 -54.08 REMARK 500 7 ASN A 296 29.71 41.51 REMARK 500 7 LEU A 298 98.03 -63.40 REMARK 500 8 SER A 229 -50.98 -126.13 REMARK 500 8 THR A 237 38.10 39.00 REMARK 500 8 GLN A 275 53.14 34.25 REMARK 500 8 PHE A 295 107.06 -46.37 REMARK 500 8 ASN A 296 27.73 40.12 REMARK 500 9 GLN A 275 50.16 32.25 REMARK 500 9 ARG A 284 -37.01 -36.00 REMARK 500 9 PHE A 295 104.11 -57.13 REMARK 500 REMARK 500 THIS ENTRY HAS 115 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001002688.1 RELATED DB: TARGETDB DBREF 2YTC A 234 311 UNP Q9NW64 RBM22_HUMAN 227 304 SEQADV 2YTC GLY A 227 UNP Q9NW64 EXPRESSION TAG SEQADV 2YTC SER A 228 UNP Q9NW64 EXPRESSION TAG SEQADV 2YTC SER A 229 UNP Q9NW64 EXPRESSION TAG SEQADV 2YTC GLY A 230 UNP Q9NW64 EXPRESSION TAG SEQADV 2YTC SER A 231 UNP Q9NW64 EXPRESSION TAG SEQADV 2YTC SER A 232 UNP Q9NW64 EXPRESSION TAG SEQADV 2YTC GLY A 233 UNP Q9NW64 EXPRESSION TAG SEQRES 1 A 85 GLY SER SER GLY SER SER GLY GLU ASP LYS THR ILE THR SEQRES 2 A 85 THR LEU TYR VAL GLY GLY LEU GLY ASP THR ILE THR GLU SEQRES 3 A 85 THR ASP LEU ARG ASN HIS PHE TYR GLN PHE GLY GLU ILE SEQRES 4 A 85 ARG THR ILE THR VAL VAL GLN ARG GLN GLN CYS ALA PHE SEQRES 5 A 85 ILE GLN PHE ALA THR ARG GLN ALA ALA GLU VAL ALA ALA SEQRES 6 A 85 GLU LYS SER PHE ASN LYS LEU ILE VAL ASN GLY ARG ARG SEQRES 7 A 85 LEU ASN VAL LYS TRP GLY ARG HELIX 1 1 THR A 251 GLN A 261 1 11 HELIX 2 2 GLN A 272 GLN A 274 5 3 HELIX 3 3 THR A 283 LYS A 293 1 11 SHEET 1 A 4 ILE A 265 VAL A 271 0 SHEET 2 A 4 CYS A 276 PHE A 281 -1 O GLN A 280 N THR A 267 SHEET 3 A 4 LEU A 241 GLY A 244 -1 N LEU A 241 O ILE A 279 SHEET 4 A 4 VAL A 307 TRP A 309 -1 O LYS A 308 N TYR A 242 SHEET 1 B 2 ILE A 299 VAL A 300 0 SHEET 2 B 2 ARG A 303 ARG A 304 -1 O ARG A 303 N VAL A 300 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1