HEADER TRANSCRIPTION 05-APR-07 2YU3 TITLE SOLUTION STRUCTURE OF THE DOMAIN SWAPPED WINGEDHELIX IN DNA-DIRECTED TITLE 2 RNA POLYMERASE III 39 KDA POLYPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE III 39 KDA POLYPEPTIDE F COMPND 3 VARIANT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: WINGED HELIX DOMAIN, UNP RESIDUES 61-142; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLR3F, RPC39; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS WINGED HELIX DOMAIN, RNA POLYMERASE III C39 SUBUNIT, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YU3 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YU3 1 VERSN REVDAT 1 09-OCT-07 2YU3 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE DOMAIN SWAPPED WINGEDHELIX IN JRNL TITL 2 DNA-DIRECTED RNA POLYMERASE III 39 KDA POLYPEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YU3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027135. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15,13C; 20MM D-TRIS REMARK 210 -HCL(PH 7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 84.51 52.55 REMARK 500 1 ASP A 25 176.63 60.30 REMARK 500 1 GLN A 27 -59.96 -139.40 REMARK 500 1 ALA A 29 103.52 -172.46 REMARK 500 1 MET A 32 -170.39 52.64 REMARK 500 1 LYS A 33 -66.66 -161.89 REMARK 500 1 ASP A 36 -61.00 -93.18 REMARK 500 1 SER A 90 95.73 -161.84 REMARK 500 1 SER A 94 101.79 -56.85 REMARK 500 2 THR A 17 -49.33 -135.06 REMARK 500 2 ASP A 25 164.74 63.29 REMARK 500 2 GLN A 27 55.67 -102.04 REMARK 500 2 ASN A 28 97.97 -172.35 REMARK 500 2 ALA A 29 92.28 -175.44 REMARK 500 2 LYS A 33 -177.08 58.30 REMARK 500 2 SER A 90 -61.12 -166.40 REMARK 500 3 SER A 2 82.24 58.79 REMARK 500 3 SER A 5 -176.74 56.64 REMARK 500 3 SER A 6 -57.66 -123.03 REMARK 500 3 THR A 17 -60.82 -105.12 REMARK 500 3 ASP A 25 96.29 62.79 REMARK 500 3 MET A 32 96.61 58.89 REMARK 500 3 SER A 35 92.52 -64.91 REMARK 500 3 VAL A 89 92.32 60.40 REMARK 500 3 SER A 93 -43.96 -137.76 REMARK 500 3 SER A 94 178.72 58.25 REMARK 500 4 SER A 6 -73.03 -143.68 REMARK 500 4 ARG A 14 67.14 -105.92 REMARK 500 4 ASP A 25 -178.11 57.59 REMARK 500 4 SER A 26 54.19 -153.19 REMARK 500 4 GLN A 27 -52.62 -150.99 REMARK 500 4 SER A 90 109.82 -165.10 REMARK 500 5 SER A 2 167.64 62.02 REMARK 500 5 ASP A 25 178.44 58.18 REMARK 500 5 SER A 26 26.61 -148.97 REMARK 500 5 ASN A 28 99.74 -168.50 REMARK 500 5 ALA A 29 30.64 -164.74 REMARK 500 5 VAL A 89 -61.34 -139.28 REMARK 500 5 SER A 90 70.73 54.72 REMARK 500 6 SER A 2 54.18 -149.75 REMARK 500 6 ASP A 25 179.30 58.68 REMARK 500 6 SER A 26 -53.85 -127.12 REMARK 500 6 ALA A 29 -169.80 63.03 REMARK 500 6 LYS A 31 27.19 -140.76 REMARK 500 6 MET A 32 177.42 -56.38 REMARK 500 6 SER A 93 -179.60 60.51 REMARK 500 7 SER A 5 91.84 -170.77 REMARK 500 7 SER A 6 132.53 -175.67 REMARK 500 7 ASP A 11 -177.73 57.46 REMARK 500 7 LEU A 12 95.43 58.19 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003795.1 RELATED DB: TARGETDB DBREF 2YU3 A 8 89 UNP Q53FI8 Q53FI8_HUMAN 61 142 SEQADV 2YU3 GLY A 1 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 SER A 2 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 SER A 3 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 GLY A 4 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 SER A 5 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 SER A 6 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 GLY A 7 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 SER A 90 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 GLY A 91 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 PRO A 92 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 SER A 93 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 SER A 94 UNP Q53FI8 EXPRESSION TAG SEQADV 2YU3 GLY A 95 UNP Q53FI8 EXPRESSION TAG SEQRES 1 A 95 GLY SER SER GLY SER SER GLY GLY GLN LEU ASP LEU LEU SEQRES 2 A 95 ARG SER ASN THR GLY LEU LEU TYR ARG ILE LYS ASP SER SEQRES 3 A 95 GLN ASN ALA GLY LYS MET LYS GLY SER ASP ASN GLN GLU SEQRES 4 A 95 LYS LEU VAL TYR GLN ILE ILE GLU ASP ALA GLY ASN LYS SEQRES 5 A 95 GLY ILE TRP SER ARG ASP VAL ARG TYR LYS SER ASN LEU SEQRES 6 A 95 PRO LEU THR GLU ILE ASN LYS ILE LEU LYS ASN LEU GLU SEQRES 7 A 95 SER LYS LYS LEU ILE LYS ALA VAL LYS SER VAL SER GLY SEQRES 8 A 95 PRO SER SER GLY HELIX 1 1 ASN A 37 ALA A 49 1 13 HELIX 2 2 SER A 56 SER A 63 1 8 HELIX 3 3 LEU A 67 LYS A 80 1 14 SHEET 1 A 3 ILE A 54 TRP A 55 0 SHEET 2 A 3 LEU A 20 ILE A 23 -1 N TYR A 21 O ILE A 54 SHEET 3 A 3 ILE A 83 VAL A 86 -1 O LYS A 84 N ARG A 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1