data_2YV6 # _entry.id 2YV6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YV6 RCSB RCSB027174 WWPDB D_1000027174 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001003453.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YV6 _pdbx_database_status.recvd_initial_deposition_date 2007-04-09 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, H.' 1 'Kishishita, S.' 2 'Murayama, K.' 3 'Takemoto, C.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 166 _citation.page_first 32 _citation.page_last 37 _citation.year 2009 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19135534 _citation.pdbx_database_id_DOI 10.1016/j.jsb.2008.12.003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, H.' 1 primary 'Takemoto, C.' 2 primary 'Akasaka, R.' 3 primary 'Uchikubo-Kamo, T.' 4 primary 'Kishishita, S.' 5 primary 'Murayama, K.' 6 primary 'Terada, T.' 7 primary 'Chen, L.' 8 primary 'Liu, Z.J.' 9 primary 'Wang, B.C.' 10 primary 'Sugano, S.' 11 primary 'Tanaka, A.' 12 primary 'Inoue, M.' 13 primary 'Kigawa, T.' 14 primary 'Shirouzu, M.' 15 primary 'Yokoyama, S.' 16 # _cell.entry_id 2YV6 _cell.length_a 61.824 _cell.length_b 61.824 _cell.length_c 137.482 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YV6 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bcl-2 homologous antagonist/killer' 18641.266 1 ? ? 'residues 23-185' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 19 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MS0836, Apoptosis regulator BAK, Bcl-2-like 7 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPE(MSE)VTLPLQPSST(MSE)GQVGRQLAIIGDDINRRYDSEFQ T(MSE)LQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDF(MSE)LHHC IARWIAQRGGWVAALNLGN ; _entity_poly.pdbx_seq_one_letter_code_can ;SEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQP TAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAALN LGN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001003453.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 GLU n 1 4 GLN n 1 5 VAL n 1 6 ALA n 1 7 GLN n 1 8 ASP n 1 9 THR n 1 10 GLU n 1 11 GLU n 1 12 VAL n 1 13 PHE n 1 14 ARG n 1 15 SER n 1 16 TYR n 1 17 VAL n 1 18 PHE n 1 19 TYR n 1 20 ARG n 1 21 HIS n 1 22 GLN n 1 23 GLN n 1 24 GLU n 1 25 GLN n 1 26 GLU n 1 27 ALA n 1 28 GLU n 1 29 GLY n 1 30 VAL n 1 31 ALA n 1 32 ALA n 1 33 PRO n 1 34 ALA n 1 35 ASP n 1 36 PRO n 1 37 GLU n 1 38 MSE n 1 39 VAL n 1 40 THR n 1 41 LEU n 1 42 PRO n 1 43 LEU n 1 44 GLN n 1 45 PRO n 1 46 SER n 1 47 SER n 1 48 THR n 1 49 MSE n 1 50 GLY n 1 51 GLN n 1 52 VAL n 1 53 GLY n 1 54 ARG n 1 55 GLN n 1 56 LEU n 1 57 ALA n 1 58 ILE n 1 59 ILE n 1 60 GLY n 1 61 ASP n 1 62 ASP n 1 63 ILE n 1 64 ASN n 1 65 ARG n 1 66 ARG n 1 67 TYR n 1 68 ASP n 1 69 SER n 1 70 GLU n 1 71 PHE n 1 72 GLN n 1 73 THR n 1 74 MSE n 1 75 LEU n 1 76 GLN n 1 77 HIS n 1 78 LEU n 1 79 GLN n 1 80 PRO n 1 81 THR n 1 82 ALA n 1 83 GLU n 1 84 ASN n 1 85 ALA n 1 86 TYR n 1 87 GLU n 1 88 TYR n 1 89 PHE n 1 90 THR n 1 91 LYS n 1 92 ILE n 1 93 ALA n 1 94 THR n 1 95 SER n 1 96 LEU n 1 97 PHE n 1 98 GLU n 1 99 SER n 1 100 GLY n 1 101 ILE n 1 102 ASN n 1 103 TRP n 1 104 GLY n 1 105 ARG n 1 106 VAL n 1 107 VAL n 1 108 ALA n 1 109 LEU n 1 110 LEU n 1 111 GLY n 1 112 PHE n 1 113 GLY n 1 114 TYR n 1 115 ARG n 1 116 LEU n 1 117 ALA n 1 118 LEU n 1 119 HIS n 1 120 VAL n 1 121 TYR n 1 122 GLN n 1 123 HIS n 1 124 GLY n 1 125 LEU n 1 126 THR n 1 127 GLY n 1 128 PHE n 1 129 LEU n 1 130 GLY n 1 131 GLN n 1 132 VAL n 1 133 THR n 1 134 ARG n 1 135 PHE n 1 136 VAL n 1 137 VAL n 1 138 ASP n 1 139 PHE n 1 140 MSE n 1 141 LEU n 1 142 HIS n 1 143 HIS n 1 144 CYS n 1 145 ILE n 1 146 ALA n 1 147 ARG n 1 148 TRP n 1 149 ILE n 1 150 ALA n 1 151 GLN n 1 152 ARG n 1 153 GLY n 1 154 GLY n 1 155 TRP n 1 156 VAL n 1 157 ALA n 1 158 ALA n 1 159 LEU n 1 160 ASN n 1 161 LEU n 1 162 GLY n 1 163 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell-free protein synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PK060220-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BAK_HUMAN _struct_ref.pdbx_db_accession Q16611 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQP TAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAALN LGN ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YV6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 163 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q16611 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 185 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 185 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YV6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.2 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, iso-propanol, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2006-10-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97105 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97105 # _reflns.entry_id 2YV6 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.5 _reflns.number_obs 5908 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.092 _reflns.pdbx_netI_over_sigmaI 25.9 _reflns.B_iso_Wilson_estimate 29.1 _reflns.pdbx_redundancy 22.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.265 _reflns_shell.meanI_over_sigI_obs 14.6 _reflns_shell.pdbx_redundancy 23.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 563 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2YV6 _refine.ls_number_reflns_obs 5832 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 150963.68 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.89 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.4 _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.214 _refine.ls_R_factor_R_free 0.248 _refine.ls_R_factor_R_free_error 0.014 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.7 _refine.ls_number_reflns_R_free 333 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 50.2 _refine.aniso_B[1][1] -3.40 _refine.aniso_B[2][2] -3.40 _refine.aniso_B[3][3] 6.81 _refine.aniso_B[1][2] 2.27 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.383717 _refine.solvent_model_param_bsol 60.1895 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2YV6 _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.16 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.21 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1276 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 1300 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 49.89 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.93 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 867 _refine_ls_shell.R_factor_R_work 0.199 _refine_ls_shell.percent_reflns_obs 98.7 _refine_ls_shell.R_factor_R_free 0.298 _refine_ls_shell.R_factor_R_free_error 0.040 _refine_ls_shell.percent_reflns_R_free 6.0 _refine_ls_shell.number_reflns_R_free 55 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param ? 'X-RAY DIFFRACTION' 3 ion.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2YV6 _struct.title 'Crystal structure of human Bcl-2 family protein Bak' _struct.pdbx_descriptor 'Bcl-2 homologous antagonist/killer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YV6 _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text ;STRUCTURE GENOMICS, BCL domain, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Apoptosis ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? GLU A 24 ? SER A 23 GLU A 46 1 ? 24 HELX_P HELX_P2 2 ASP A 35 ? VAL A 39 ? ASP A 57 VAL A 61 5 ? 5 HELX_P HELX_P3 3 SER A 47 ? GLN A 79 ? SER A 69 GLN A 101 1 ? 33 HELX_P HELX_P4 4 ASN A 84 ? PHE A 97 ? ASN A 106 PHE A 119 1 ? 14 HELX_P HELX_P5 5 ASN A 102 ? HIS A 123 ? ASN A 124 HIS A 145 1 ? 22 HELX_P HELX_P6 6 PHE A 128 ? HIS A 143 ? PHE A 150 HIS A 165 1 ? 16 HELX_P HELX_P7 7 CYS A 144 ? ARG A 152 ? CYS A 166 ARG A 174 1 ? 9 HELX_P HELX_P8 8 GLY A 154 ? LEU A 161 ? GLY A 176 LEU A 183 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 144 SG ? ? ? 1_555 A CYS 144 SG ? ? A CYS 166 A CYS 166 12_544 ? ? ? ? ? ? ? 2.347 ? covale1 covale ? ? A GLU 37 C ? ? ? 1_555 A MSE 38 N ? ? A GLU 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 38 C ? ? ? 1_555 A VAL 39 N ? ? A MSE 60 A VAL 61 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A THR 48 C ? ? ? 1_555 A MSE 49 N ? ? A THR 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 49 C ? ? ? 1_555 A GLY 50 N ? ? A MSE 71 A GLY 72 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A THR 73 C ? ? ? 1_555 A MSE 74 N ? ? A THR 95 A MSE 96 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 74 C ? ? ? 1_555 A LEU 75 N ? ? A MSE 96 A LEU 97 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A PHE 139 C ? ? ? 1_555 A MSE 140 N ? ? A PHE 161 A MSE 162 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? A MSE 140 C ? ? ? 1_555 A LEU 141 N ? ? A MSE 162 A LEU 163 1_555 ? ? ? ? ? ? ? 1.326 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ASN A 102 ? ASN A 124 . ? 1_555 ? 2 AC1 8 TRP A 103 ? TRP A 125 . ? 1_555 ? 3 AC1 8 GLY A 130 ? GLY A 152 . ? 8_545 ? 4 AC1 8 ARG A 134 ? ARG A 156 . ? 8_545 ? 5 AC1 8 TRP A 148 ? TRP A 170 . ? 1_555 ? 6 AC1 8 ARG A 152 ? ARG A 174 . ? 1_555 ? 7 AC1 8 HOH C . ? HOH A 206 . ? 8_545 ? 8 AC1 8 HOH C . ? HOH A 207 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YV6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YV6 _atom_sites.fract_transf_matrix[1][1] 0.016175 _atom_sites.fract_transf_matrix[1][2] 0.009339 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018677 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007274 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 23 23 SER SER A . n A 1 2 GLU 2 24 24 GLU GLU A . n A 1 3 GLU 3 25 25 GLU GLU A . n A 1 4 GLN 4 26 26 GLN GLN A . n A 1 5 VAL 5 27 27 VAL VAL A . n A 1 6 ALA 6 28 28 ALA ALA A . n A 1 7 GLN 7 29 29 GLN GLN A . n A 1 8 ASP 8 30 30 ASP ASP A . n A 1 9 THR 9 31 31 THR THR A . n A 1 10 GLU 10 32 32 GLU GLU A . n A 1 11 GLU 11 33 33 GLU GLU A . n A 1 12 VAL 12 34 34 VAL VAL A . n A 1 13 PHE 13 35 35 PHE PHE A . n A 1 14 ARG 14 36 36 ARG ARG A . n A 1 15 SER 15 37 37 SER SER A . n A 1 16 TYR 16 38 38 TYR TYR A . n A 1 17 VAL 17 39 39 VAL VAL A . n A 1 18 PHE 18 40 40 PHE PHE A . n A 1 19 TYR 19 41 41 TYR TYR A . n A 1 20 ARG 20 42 42 ARG ARG A . n A 1 21 HIS 21 43 43 HIS HIS A . n A 1 22 GLN 22 44 44 GLN GLN A . n A 1 23 GLN 23 45 45 GLN GLN A . n A 1 24 GLU 24 46 46 GLU GLU A . n A 1 25 GLN 25 47 47 GLN GLN A . n A 1 26 GLU 26 48 48 GLU GLU A . n A 1 27 ALA 27 49 ? ? ? A . n A 1 28 GLU 28 50 ? ? ? A . n A 1 29 GLY 29 51 ? ? ? A . n A 1 30 VAL 30 52 52 VAL VAL A . n A 1 31 ALA 31 53 53 ALA ALA A . n A 1 32 ALA 32 54 54 ALA ALA A . n A 1 33 PRO 33 55 55 PRO PRO A . n A 1 34 ALA 34 56 56 ALA ALA A . n A 1 35 ASP 35 57 57 ASP ASP A . n A 1 36 PRO 36 58 58 PRO PRO A . n A 1 37 GLU 37 59 59 GLU GLU A . n A 1 38 MSE 38 60 60 MSE MSE A . n A 1 39 VAL 39 61 61 VAL VAL A . n A 1 40 THR 40 62 62 THR THR A . n A 1 41 LEU 41 63 63 LEU LEU A . n A 1 42 PRO 42 64 64 PRO PRO A . n A 1 43 LEU 43 65 65 LEU LEU A . n A 1 44 GLN 44 66 66 GLN GLN A . n A 1 45 PRO 45 67 67 PRO PRO A . n A 1 46 SER 46 68 68 SER SER A . n A 1 47 SER 47 69 69 SER SER A . n A 1 48 THR 48 70 70 THR THR A . n A 1 49 MSE 49 71 71 MSE MSE A . n A 1 50 GLY 50 72 72 GLY GLY A . n A 1 51 GLN 51 73 73 GLN GLN A . n A 1 52 VAL 52 74 74 VAL VAL A . n A 1 53 GLY 53 75 75 GLY GLY A . n A 1 54 ARG 54 76 76 ARG ARG A . n A 1 55 GLN 55 77 77 GLN GLN A . n A 1 56 LEU 56 78 78 LEU LEU A . n A 1 57 ALA 57 79 79 ALA ALA A . n A 1 58 ILE 58 80 80 ILE ILE A . n A 1 59 ILE 59 81 81 ILE ILE A . n A 1 60 GLY 60 82 82 GLY GLY A . n A 1 61 ASP 61 83 83 ASP ASP A . n A 1 62 ASP 62 84 84 ASP ASP A . n A 1 63 ILE 63 85 85 ILE ILE A . n A 1 64 ASN 64 86 86 ASN ASN A . n A 1 65 ARG 65 87 87 ARG ARG A . n A 1 66 ARG 66 88 88 ARG ARG A . n A 1 67 TYR 67 89 89 TYR TYR A . n A 1 68 ASP 68 90 90 ASP ASP A . n A 1 69 SER 69 91 91 SER SER A . n A 1 70 GLU 70 92 92 GLU GLU A . n A 1 71 PHE 71 93 93 PHE PHE A . n A 1 72 GLN 72 94 94 GLN GLN A . n A 1 73 THR 73 95 95 THR THR A . n A 1 74 MSE 74 96 96 MSE MSE A . n A 1 75 LEU 75 97 97 LEU LEU A . n A 1 76 GLN 76 98 98 GLN GLN A . n A 1 77 HIS 77 99 99 HIS HIS A . n A 1 78 LEU 78 100 100 LEU LEU A . n A 1 79 GLN 79 101 101 GLN GLN A . n A 1 80 PRO 80 102 102 PRO PRO A . n A 1 81 THR 81 103 103 THR THR A . n A 1 82 ALA 82 104 104 ALA ALA A . n A 1 83 GLU 83 105 105 GLU GLU A . n A 1 84 ASN 84 106 106 ASN ASN A . n A 1 85 ALA 85 107 107 ALA ALA A . n A 1 86 TYR 86 108 108 TYR TYR A . n A 1 87 GLU 87 109 109 GLU GLU A . n A 1 88 TYR 88 110 110 TYR TYR A . n A 1 89 PHE 89 111 111 PHE PHE A . n A 1 90 THR 90 112 112 THR THR A . n A 1 91 LYS 91 113 113 LYS LYS A . n A 1 92 ILE 92 114 114 ILE ILE A . n A 1 93 ALA 93 115 115 ALA ALA A . n A 1 94 THR 94 116 116 THR THR A . n A 1 95 SER 95 117 117 SER SER A . n A 1 96 LEU 96 118 118 LEU LEU A . n A 1 97 PHE 97 119 119 PHE PHE A . n A 1 98 GLU 98 120 120 GLU GLU A . n A 1 99 SER 99 121 121 SER SER A . n A 1 100 GLY 100 122 122 GLY GLY A . n A 1 101 ILE 101 123 123 ILE ILE A . n A 1 102 ASN 102 124 124 ASN ASN A . n A 1 103 TRP 103 125 125 TRP TRP A . n A 1 104 GLY 104 126 126 GLY GLY A . n A 1 105 ARG 105 127 127 ARG ARG A . n A 1 106 VAL 106 128 128 VAL VAL A . n A 1 107 VAL 107 129 129 VAL VAL A . n A 1 108 ALA 108 130 130 ALA ALA A . n A 1 109 LEU 109 131 131 LEU LEU A . n A 1 110 LEU 110 132 132 LEU LEU A . n A 1 111 GLY 111 133 133 GLY GLY A . n A 1 112 PHE 112 134 134 PHE PHE A . n A 1 113 GLY 113 135 135 GLY GLY A . n A 1 114 TYR 114 136 136 TYR TYR A . n A 1 115 ARG 115 137 137 ARG ARG A . n A 1 116 LEU 116 138 138 LEU LEU A . n A 1 117 ALA 117 139 139 ALA ALA A . n A 1 118 LEU 118 140 140 LEU LEU A . n A 1 119 HIS 119 141 141 HIS HIS A . n A 1 120 VAL 120 142 142 VAL VAL A . n A 1 121 TYR 121 143 143 TYR TYR A . n A 1 122 GLN 122 144 144 GLN GLN A . n A 1 123 HIS 123 145 145 HIS HIS A . n A 1 124 GLY 124 146 146 GLY GLY A . n A 1 125 LEU 125 147 147 LEU LEU A . n A 1 126 THR 126 148 148 THR THR A . n A 1 127 GLY 127 149 149 GLY GLY A . n A 1 128 PHE 128 150 150 PHE PHE A . n A 1 129 LEU 129 151 151 LEU LEU A . n A 1 130 GLY 130 152 152 GLY GLY A . n A 1 131 GLN 131 153 153 GLN GLN A . n A 1 132 VAL 132 154 154 VAL VAL A . n A 1 133 THR 133 155 155 THR THR A . n A 1 134 ARG 134 156 156 ARG ARG A . n A 1 135 PHE 135 157 157 PHE PHE A . n A 1 136 VAL 136 158 158 VAL VAL A . n A 1 137 VAL 137 159 159 VAL VAL A . n A 1 138 ASP 138 160 160 ASP ASP A . n A 1 139 PHE 139 161 161 PHE PHE A . n A 1 140 MSE 140 162 162 MSE MSE A . n A 1 141 LEU 141 163 163 LEU LEU A . n A 1 142 HIS 142 164 164 HIS HIS A . n A 1 143 HIS 143 165 165 HIS HIS A . n A 1 144 CYS 144 166 166 CYS CYS A . n A 1 145 ILE 145 167 167 ILE ILE A . n A 1 146 ALA 146 168 168 ALA ALA A . n A 1 147 ARG 147 169 169 ARG ARG A . n A 1 148 TRP 148 170 170 TRP TRP A . n A 1 149 ILE 149 171 171 ILE ILE A . n A 1 150 ALA 150 172 172 ALA ALA A . n A 1 151 GLN 151 173 173 GLN GLN A . n A 1 152 ARG 152 174 174 ARG ARG A . n A 1 153 GLY 153 175 175 GLY GLY A . n A 1 154 GLY 154 176 176 GLY GLY A . n A 1 155 TRP 155 177 177 TRP TRP A . n A 1 156 VAL 156 178 178 VAL VAL A . n A 1 157 ALA 157 179 179 ALA ALA A . n A 1 158 ALA 158 180 180 ALA ALA A . n A 1 159 LEU 159 181 181 LEU LEU A . n A 1 160 ASN 160 182 182 ASN ASN A . n A 1 161 LEU 161 183 183 LEU LEU A . n A 1 162 GLY 162 184 184 GLY GLY A . n A 1 163 ASN 163 185 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 201 SO4 SO4 A . C 3 HOH 1 202 202 HOH HOH A . C 3 HOH 2 203 203 HOH HOH A . C 3 HOH 3 204 204 HOH HOH A . C 3 HOH 4 205 205 HOH HOH A . C 3 HOH 5 206 206 HOH HOH A . C 3 HOH 6 207 207 HOH HOH A . C 3 HOH 7 208 208 HOH HOH A . C 3 HOH 8 209 209 HOH HOH A . C 3 HOH 9 210 210 HOH HOH A . C 3 HOH 10 211 211 HOH HOH A . C 3 HOH 11 212 212 HOH HOH A . C 3 HOH 12 213 213 HOH HOH A . C 3 HOH 13 214 214 HOH HOH A . C 3 HOH 14 215 215 HOH HOH A . C 3 HOH 15 216 216 HOH HOH A . C 3 HOH 16 217 217 HOH HOH A . C 3 HOH 17 218 218 HOH HOH A . C 3 HOH 18 219 219 HOH HOH A . C 3 HOH 19 220 220 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 38 A MSE 60 ? MET SELENOMETHIONINE 2 A MSE 49 A MSE 71 ? MET SELENOMETHIONINE 3 A MSE 74 A MSE 96 ? MET SELENOMETHIONINE 4 A MSE 140 A MSE 162 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-15 2 'Structure model' 1 1 2008-10-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A LEU 63 ? ? N A PRO 64 ? ? CA A PRO 64 ? ? 129.65 119.30 10.35 1.50 Y 2 1 C A GLN 66 ? ? N A PRO 67 ? ? CA A PRO 67 ? ? 130.01 119.30 10.71 1.50 Y 3 1 C A GLN 101 ? ? N A PRO 102 ? ? CA A PRO 102 ? ? 128.61 119.30 9.31 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 53 ? ? -101.39 76.25 2 1 PRO A 64 ? ? -39.30 -10.15 3 1 LEU A 65 ? ? -24.94 147.69 4 1 PRO A 67 ? ? -17.43 -58.21 5 1 HIS A 99 ? ? -46.44 -74.34 6 1 GLN A 101 ? ? 13.64 88.08 7 1 ALA A 107 ? ? -32.81 -29.75 8 1 SER A 121 ? ? -90.69 58.59 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 49 ? A ALA 27 2 1 Y 1 A GLU 50 ? A GLU 28 3 1 Y 1 A GLY 51 ? A GLY 29 4 1 Y 1 A ASN 185 ? A ASN 163 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #