HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 12-APR-07 2YVJ TITLE CRYSTAL STRUCTURE OF THE FERREDOXIN-FERREDOXIN REDUCTASE (BPHA3- TITLE 2 BPHA4)COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN REDUCTASE; COMPND 3 CHAIN: A, P; COMPND 4 SYNONYM: FERREDOXIN REDUCTASE BPHA4; COMPND 5 EC: 1.18.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BIPHENYL DIOXYGENASE FERREDOXIN SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 306; SOURCE 4 STRAIN: STRAIN KKS102; SOURCE 5 GENE: BPHA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 10 ORGANISM_TAXID: 306; SOURCE 11 STRAIN: STRAIN KKS102; SOURCE 12 GENE: BPHA3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELECTRON TRANSFER, FERREDOXIN, FERREDOXIN REDUCTASE, OXIDOREDUCTASE- KEYWDS 2 ELECTRON TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.SENDA,M.SENDA REVDAT 3 13-MAR-24 2YVJ 1 REMARK LINK REVDAT 2 24-FEB-09 2YVJ 1 VERSN REVDAT 1 23-OCT-07 2YVJ 0 JRNL AUTH M.SENDA,S.KISHIGAMI,S.KIMURA,M.FUKUDA,T.ISHIDA,T.SENDA JRNL TITL MOLECULAR MECHANISM OF THE REDOX-DEPENDENT INTERACTION JRNL TITL 2 BETWEEN NADH-DEPENDENT FERREDOXIN REDUCTASE AND RIESKE-TYPE JRNL TITL 3 [2FE-2S] FERREDOXIN JRNL REF J.MOL.BIOL. V. 373 382 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17850818 JRNL DOI 10.1016/J.JMB.2007.08.002 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.183 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.179 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4047 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 85677 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.190 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.177 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 3933 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 78905 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 180 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 7044.4 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 28196 REMARK 3 NUMBER OF RESTRAINTS : 29665 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 ANGLE DISTANCES (A) : 0.024 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.027 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.032 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.037 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.031 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.120 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE CRYSTAL FORM IS TWINNED BY THE REMARK 3 OPERATOR L,-K,H, PERFECT TWINED CRYSTAL. REMARK 4 REMARK 4 2YVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000027187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9780 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86196 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 18.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 30%(W/V) PEG4000, PH 6.50, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 86.85750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 407 REMARK 465 ALA A 408 REMARK 465 MET B 1 REMARK 465 HIS B 108 REMARK 465 ALA B 109 REMARK 465 MET P 1 REMARK 465 SER P 2 REMARK 465 GLN P 3 REMARK 465 GLU P 4 REMARK 465 ALA P 5 REMARK 465 ALA P 407 REMARK 465 ALA P 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 TYR B 55 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 29 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 262 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 379 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 379 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG P 195 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG P 195 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 VAL P 210 C - N - CA ANGL. DEV. = 28.7 DEGREES REMARK 500 ARG P 245 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG P 245 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG P 262 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TYR P 269 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG P 278 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG P 372 CD - NE - CZ ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -70.08 -58.85 REMARK 500 GLN A 28 37.96 -80.44 REMARK 500 ALA A 29 11.74 -148.66 REMARK 500 GLN A 32 47.79 -109.31 REMARK 500 GLU A 43 152.63 165.22 REMARK 500 LYS A 53 -124.86 -104.52 REMARK 500 ASP A 54 -45.85 -28.01 REMARK 500 ALA A 57 -83.46 -92.57 REMARK 500 HIS A 58 32.45 -98.73 REMARK 500 SER A 84 152.25 179.19 REMARK 500 ALA A 108 56.54 -146.20 REMARK 500 ALA A 115 176.43 -35.46 REMARK 500 LEU A 119 42.06 -101.28 REMARK 500 LEU A 129 82.93 51.70 REMARK 500 ARG A 130 -4.78 -141.66 REMARK 500 PRO A 144 -79.54 -48.97 REMARK 500 PRO A 178 0.03 -63.61 REMARK 500 ALA A 184 45.73 -153.50 REMARK 500 ALA A 199 29.84 -69.83 REMARK 500 ASP A 215 -86.55 45.44 REMARK 500 GLU A 289 58.69 -90.45 REMARK 500 SER A 292 -53.04 -23.52 REMARK 500 GLU A 315 161.68 -48.54 REMARK 500 ASP A 322 75.05 -116.50 REMARK 500 ALA A 325 42.02 -77.01 REMARK 500 LYS A 359 53.41 36.83 REMARK 500 ALA A 365 137.93 175.12 REMARK 500 ASN A 369 33.75 70.30 REMARK 500 ASN A 370 45.82 -141.15 REMARK 500 LYS A 386 75.83 -112.52 REMARK 500 ALA A 405 -129.65 -54.89 REMARK 500 CYS B 7 -157.13 -169.58 REMARK 500 SER B 21 52.44 -103.33 REMARK 500 ASP B 23 -92.75 68.72 REMARK 500 ALA B 24 13.98 -143.50 REMARK 500 GLU B 47 61.88 38.39 REMARK 500 SER B 79 127.58 -175.67 REMARK 500 SER B 103 -147.67 -77.12 REMARK 500 ARG B 104 40.10 15.15 REMARK 500 TYR P 31 119.53 -28.19 REMARK 500 PRO P 50 38.93 -70.96 REMARK 500 LYS P 53 -118.93 -108.32 REMARK 500 HIS P 58 -67.60 -122.21 REMARK 500 GLU P 73 47.64 71.26 REMARK 500 SER P 84 167.09 169.40 REMARK 500 THR P 123 -112.70 48.18 REMARK 500 ARG P 130 -52.58 -161.33 REMARK 500 ASP P 134 24.09 -72.45 REMARK 500 ALA P 135 -27.31 -148.55 REMARK 500 LEU P 142 46.91 -79.05 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAI A 503 REMARK 610 NAI P 504 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 500 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 43 SG REMARK 620 2 FES B 500 S1 95.8 REMARK 620 3 FES B 500 S2 103.9 104.7 REMARK 620 4 CYS B 63 SG 117.0 114.5 118.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 500 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 45 ND1 REMARK 620 2 FES B 500 S1 125.1 REMARK 620 3 FES B 500 S2 95.7 104.4 REMARK 620 4 HIS B 66 ND1 72.7 124.4 127.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD P 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI P 504 DBREF 2YVJ A 1 408 UNP Q52437 Q52437_PSES1 1 408 DBREF 2YVJ P 1 408 UNP Q52437 Q52437_PSES1 1 408 DBREF 2YVJ B 1 109 UNP Q52440 BPHA3_PSES1 1 109 SEQRES 1 A 408 MET SER GLN GLU ALA LEU LYS ALA PRO VAL VAL VAL LEU SEQRES 2 A 408 GLY ALA GLY LEU ALA SER VAL SER PHE VAL ALA GLU LEU SEQRES 3 A 408 ARG GLN ALA GLY TYR GLN GLY LEU ILE THR VAL VAL GLY SEQRES 4 A 408 ASP GLU ALA GLU ARG PRO TYR ASP ARG PRO PRO LEU SER SEQRES 5 A 408 LYS ASP PHE MET ALA HIS GLY ASP ALA GLU LYS ILE ARG SEQRES 6 A 408 LEU ASP CYS LYS ARG ALA PRO GLU VAL GLU TRP LEU LEU SEQRES 7 A 408 GLY VAL THR ALA GLN SER PHE ASP PRO GLN ALA HIS THR SEQRES 8 A 408 VAL ALA LEU SER ASP GLY ARG THR LEU PRO TYR GLY THR SEQRES 9 A 408 LEU VAL LEU ALA THR GLY ALA ALA PRO ARG ALA LEU PRO SEQRES 10 A 408 THR LEU GLN GLY ALA THR MET PRO VAL HIS THR LEU ARG SEQRES 11 A 408 THR LEU GLU ASP ALA ARG ARG ILE GLN ALA GLY LEU ARG SEQRES 12 A 408 PRO GLN SER ARG LEU LEU ILE VAL GLY GLY GLY VAL ILE SEQRES 13 A 408 GLY LEU GLU LEU ALA ALA THR ALA ARG THR ALA GLY VAL SEQRES 14 A 408 HIS VAL SER LEU VAL GLU THR GLN PRO ARG LEU MET SER SEQRES 15 A 408 ARG ALA ALA PRO ALA THR LEU ALA ASP PHE VAL ALA ARG SEQRES 16 A 408 TYR HIS ALA ALA GLN GLY VAL ASP LEU ARG PHE GLU ARG SEQRES 17 A 408 SER VAL THR GLY SER VAL ASP GLY VAL VAL LEU LEU ASP SEQRES 18 A 408 ASP GLY THR ARG ILE ALA ALA ASP MET VAL VAL VAL GLY SEQRES 19 A 408 ILE GLY VAL LEU ALA ASN ASP ALA LEU ALA ARG ALA ALA SEQRES 20 A 408 GLY LEU ALA CYS ASP ASP GLY ILE PHE VAL ASP ALA TYR SEQRES 21 A 408 GLY ARG THR THR CYS PRO ASP VAL TYR ALA LEU GLY ASP SEQRES 22 A 408 VAL THR ARG GLN ARG ASN PRO LEU SER GLY ARG PHE GLU SEQRES 23 A 408 ARG ILE GLU THR TRP SER ASN ALA GLN ASN GLN GLY ILE SEQRES 24 A 408 ALA VAL ALA ARG HIS LEU VAL ASP PRO THR ALA PRO GLY SEQRES 25 A 408 TYR ALA GLU LEU PRO TRP TYR TRP SER ASP GLN GLY ALA SEQRES 26 A 408 LEU ARG ILE GLN VAL ALA GLY LEU ALA SER GLY ASP GLU SEQRES 27 A 408 GLU ILE VAL ARG GLY GLU VAL SER LEU ASP ALA PRO LYS SEQRES 28 A 408 PHE THR LEU ILE GLU LEU GLN LYS GLY ARG ILE VAL GLY SEQRES 29 A 408 ALA THR CYS VAL ASN ASN ALA ARG ASP PHE ALA PRO LEU SEQRES 30 A 408 ARG ARG LEU LEU ALA VAL GLY ALA LYS PRO ASP ARG ALA SEQRES 31 A 408 ALA LEU ALA ASP PRO ALA THR ASP LEU ARG LYS LEU ALA SEQRES 32 A 408 ALA ALA VAL ALA ALA SEQRES 1 B 109 MET THR PHE THR LYS ALA CYS SER VAL ASP GLU VAL PRO SEQRES 2 B 109 PRO GLY GLU ALA LEU GLN VAL SER HIS ASP ALA GLN LYS SEQRES 3 B 109 VAL ALA ILE PHE ASN VAL ASP GLY GLU PHE PHE ALA THR SEQRES 4 B 109 GLN ASP GLN CYS THR HIS GLY GLU TRP SER LEU SER GLU SEQRES 5 B 109 GLY GLY TYR LEU ASP GLY ASP VAL VAL GLU CYS SER LEU SEQRES 6 B 109 HIS MET GLY LYS PHE CYS VAL ARG THR GLY LYS VAL LYS SEQRES 7 B 109 SER PRO PRO PRO CYS GLU PRO LEU LYS VAL TYR PRO ILE SEQRES 8 B 109 ARG ILE GLU GLY ARG ASP VAL LEU VAL ASP PHE SER ARG SEQRES 9 B 109 ALA ALA LEU HIS ALA SEQRES 1 P 408 MET SER GLN GLU ALA LEU LYS ALA PRO VAL VAL VAL LEU SEQRES 2 P 408 GLY ALA GLY LEU ALA SER VAL SER PHE VAL ALA GLU LEU SEQRES 3 P 408 ARG GLN ALA GLY TYR GLN GLY LEU ILE THR VAL VAL GLY SEQRES 4 P 408 ASP GLU ALA GLU ARG PRO TYR ASP ARG PRO PRO LEU SER SEQRES 5 P 408 LYS ASP PHE MET ALA HIS GLY ASP ALA GLU LYS ILE ARG SEQRES 6 P 408 LEU ASP CYS LYS ARG ALA PRO GLU VAL GLU TRP LEU LEU SEQRES 7 P 408 GLY VAL THR ALA GLN SER PHE ASP PRO GLN ALA HIS THR SEQRES 8 P 408 VAL ALA LEU SER ASP GLY ARG THR LEU PRO TYR GLY THR SEQRES 9 P 408 LEU VAL LEU ALA THR GLY ALA ALA PRO ARG ALA LEU PRO SEQRES 10 P 408 THR LEU GLN GLY ALA THR MET PRO VAL HIS THR LEU ARG SEQRES 11 P 408 THR LEU GLU ASP ALA ARG ARG ILE GLN ALA GLY LEU ARG SEQRES 12 P 408 PRO GLN SER ARG LEU LEU ILE VAL GLY GLY GLY VAL ILE SEQRES 13 P 408 GLY LEU GLU LEU ALA ALA THR ALA ARG THR ALA GLY VAL SEQRES 14 P 408 HIS VAL SER LEU VAL GLU THR GLN PRO ARG LEU MET SER SEQRES 15 P 408 ARG ALA ALA PRO ALA THR LEU ALA ASP PHE VAL ALA ARG SEQRES 16 P 408 TYR HIS ALA ALA GLN GLY VAL ASP LEU ARG PHE GLU ARG SEQRES 17 P 408 SER VAL THR GLY SER VAL ASP GLY VAL VAL LEU LEU ASP SEQRES 18 P 408 ASP GLY THR ARG ILE ALA ALA ASP MET VAL VAL VAL GLY SEQRES 19 P 408 ILE GLY VAL LEU ALA ASN ASP ALA LEU ALA ARG ALA ALA SEQRES 20 P 408 GLY LEU ALA CYS ASP ASP GLY ILE PHE VAL ASP ALA TYR SEQRES 21 P 408 GLY ARG THR THR CYS PRO ASP VAL TYR ALA LEU GLY ASP SEQRES 22 P 408 VAL THR ARG GLN ARG ASN PRO LEU SER GLY ARG PHE GLU SEQRES 23 P 408 ARG ILE GLU THR TRP SER ASN ALA GLN ASN GLN GLY ILE SEQRES 24 P 408 ALA VAL ALA ARG HIS LEU VAL ASP PRO THR ALA PRO GLY SEQRES 25 P 408 TYR ALA GLU LEU PRO TRP TYR TRP SER ASP GLN GLY ALA SEQRES 26 P 408 LEU ARG ILE GLN VAL ALA GLY LEU ALA SER GLY ASP GLU SEQRES 27 P 408 GLU ILE VAL ARG GLY GLU VAL SER LEU ASP ALA PRO LYS SEQRES 28 P 408 PHE THR LEU ILE GLU LEU GLN LYS GLY ARG ILE VAL GLY SEQRES 29 P 408 ALA THR CYS VAL ASN ASN ALA ARG ASP PHE ALA PRO LEU SEQRES 30 P 408 ARG ARG LEU LEU ALA VAL GLY ALA LYS PRO ASP ARG ALA SEQRES 31 P 408 ALA LEU ALA ASP PRO ALA THR ASP LEU ARG LYS LEU ALA SEQRES 32 P 408 ALA ALA VAL ALA ALA HET FAD A 501 53 HET NAI A 503 35 HET FES B 500 4 HET FAD P 502 53 HET NAI P 504 35 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETSYN NAI NADH FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 NAI 2(C21 H29 N7 O14 P2) FORMUL 6 FES FE2 S2 FORMUL 9 HOH *78(H2 O) HELIX 1 1 GLY A 16 GLN A 28 1 13 HELIX 2 2 ARG A 48 LYS A 53 5 6 HELIX 3 3 ASP A 54 GLY A 59 1 6 HELIX 4 4 GLU A 133 ALA A 140 1 8 HELIX 5 5 GLY A 154 GLY A 168 1 15 HELIX 6 6 PRO A 186 ALA A 199 1 14 HELIX 7 7 ASP A 241 ALA A 247 1 7 HELIX 8 8 THR A 290 ASP A 307 1 18 HELIX 9 9 ASN A 370 VAL A 383 1 14 HELIX 10 10 ASP A 388 ASP A 394 1 7 HELIX 11 11 ASP A 398 ALA A 405 1 8 HELIX 12 12 GLY P 16 GLY P 30 1 15 HELIX 13 13 ARG P 48 SER P 52 5 5 HELIX 14 14 LYS P 53 ALA P 57 5 5 HELIX 15 15 ASP P 60 ARG P 65 5 6 HELIX 16 16 LEU P 116 GLN P 120 5 5 HELIX 17 17 LEU P 132 ALA P 140 1 9 HELIX 18 18 GLY P 154 GLY P 168 1 15 HELIX 19 19 PRO P 186 ALA P 199 1 14 HELIX 20 20 ASP P 241 GLY P 248 1 8 HELIX 21 21 THR P 290 ASP P 307 1 18 HELIX 22 22 ASN P 370 GLY P 384 1 15 HELIX 23 23 ASP P 388 ASP P 394 1 7 HELIX 24 24 ASP P 398 ALA P 404 1 7 SHEET 1 A 5 GLU A 75 LEU A 78 0 SHEET 2 A 5 ILE A 35 GLY A 39 1 N VAL A 37 O GLU A 75 SHEET 3 A 5 VAL A 10 LEU A 13 1 N VAL A 12 O VAL A 38 SHEET 4 A 5 THR A 104 LEU A 107 1 O VAL A 106 N LEU A 13 SHEET 5 A 5 VAL A 268 ALA A 270 1 O TYR A 269 N LEU A 107 SHEET 1 B 3 ALA A 82 ASP A 86 0 SHEET 2 B 3 THR A 91 LEU A 94 -1 O THR A 91 N ASP A 86 SHEET 3 B 3 THR A 99 PRO A 101 -1 O LEU A 100 N VAL A 92 SHEET 1 C 2 ALA A 111 PRO A 113 0 SHEET 2 C 2 VAL A 237 ALA A 239 -1 O LEU A 238 N ALA A 112 SHEET 1 D 5 VAL A 126 HIS A 127 0 SHEET 2 D 5 VAL A 231 VAL A 233 1 O VAL A 233 N HIS A 127 SHEET 3 D 5 SER A 146 VAL A 151 1 N VAL A 151 O VAL A 232 SHEET 4 D 5 VAL A 169 VAL A 174 1 O VAL A 174 N ILE A 150 SHEET 5 D 5 VAL A 202 ARG A 205 1 O ASP A 203 N VAL A 171 SHEET 1 E 3 VAL A 210 VAL A 214 0 SHEET 2 E 3 VAL A 217 LEU A 220 -1 O VAL A 217 N VAL A 214 SHEET 3 E 3 ARG A 225 ALA A 227 -1 O ILE A 226 N VAL A 218 SHEET 1 F 3 ILE A 255 PHE A 256 0 SHEET 2 F 3 THR A 275 ARG A 278 1 O ARG A 276 N ILE A 255 SHEET 3 F 3 PHE A 285 ARG A 287 -1 O GLU A 286 N GLN A 277 SHEET 1 G 5 TRP A 318 ASP A 322 0 SHEET 2 G 5 ARG A 327 GLY A 332 -1 O VAL A 330 N TYR A 319 SHEET 3 G 5 ARG A 361 VAL A 368 -1 O ALA A 365 N ALA A 331 SHEET 4 G 5 LYS A 351 GLN A 358 -1 N PHE A 352 O VAL A 368 SHEET 5 G 5 GLU A 338 GLU A 344 -1 N GLU A 338 O LEU A 357 SHEET 1 H 3 THR B 4 SER B 8 0 SHEET 2 H 3 ASP B 97 VAL B 100 -1 O VAL B 98 N CYS B 7 SHEET 3 H 3 ILE B 91 ILE B 93 -1 N ARG B 92 O LEU B 99 SHEET 1 I 4 ALA B 17 HIS B 22 0 SHEET 2 I 4 GLN B 25 VAL B 32 -1 O GLN B 25 N HIS B 22 SHEET 3 I 4 GLU B 35 GLN B 40 -1 O GLU B 35 N VAL B 32 SHEET 4 I 4 VAL B 88 TYR B 89 -1 O TYR B 89 N ALA B 38 SHEET 1 J 4 TYR B 55 ASP B 57 0 SHEET 2 J 4 VAL B 60 GLU B 62 -1 O VAL B 60 N ASP B 57 SHEET 3 J 4 LYS B 69 CYS B 71 -1 O PHE B 70 N VAL B 61 SHEET 4 J 4 VAL B 77 SER B 79 -1 O LYS B 78 N LYS B 69 SHEET 1 K 5 GLU P 75 LEU P 78 0 SHEET 2 K 5 ILE P 35 GLY P 39 1 N VAL P 37 O LEU P 77 SHEET 3 K 5 VAL P 10 LEU P 13 1 N VAL P 12 O THR P 36 SHEET 4 K 5 THR P 104 LEU P 107 1 O VAL P 106 N LEU P 13 SHEET 5 K 5 VAL P 268 ALA P 270 1 O TYR P 269 N LEU P 105 SHEET 1 L 3 ALA P 82 ASP P 86 0 SHEET 2 L 3 THR P 91 LEU P 94 -1 O ALA P 93 N GLN P 83 SHEET 3 L 3 THR P 99 PRO P 101 -1 O LEU P 100 N VAL P 92 SHEET 1 M 2 ALA P 111 PRO P 113 0 SHEET 2 M 2 VAL P 237 ALA P 239 -1 O LEU P 238 N ALA P 112 SHEET 1 N 4 ARG P 205 PHE P 206 0 SHEET 2 N 4 LEU P 173 GLU P 175 1 N LEU P 173 O ARG P 205 SHEET 3 N 4 LEU P 149 VAL P 151 1 N ILE P 150 O VAL P 174 SHEET 4 N 4 VAL P 231 VAL P 232 1 O VAL P 232 N LEU P 149 SHEET 1 O 3 ILE P 255 PHE P 256 0 SHEET 2 O 3 THR P 275 ASN P 279 1 O ARG P 276 N ILE P 255 SHEET 3 O 3 ARG P 284 GLU P 286 -1 O ARG P 284 N ASN P 279 SHEET 1 P 5 TRP P 318 GLN P 323 0 SHEET 2 P 5 LEU P 326 GLY P 332 -1 O VAL P 330 N TYR P 319 SHEET 3 P 5 ARG P 361 VAL P 368 -1 O CYS P 367 N GLN P 329 SHEET 4 P 5 LYS P 351 GLN P 358 -1 N GLU P 356 O VAL P 363 SHEET 5 P 5 GLU P 338 GLU P 344 -1 N GLU P 344 O LYS P 351 LINK SG CYS B 43 FE1 FES B 500 1555 1555 2.46 LINK ND1 HIS B 45 FE2 FES B 500 1555 1555 2.68 LINK SG CYS B 63 FE1 FES B 500 1555 1555 1.82 LINK ND1 HIS B 66 FE2 FES B 500 1555 1555 1.66 CISPEP 1 ALA A 8 PRO A 9 0 -1.16 CISPEP 2 PRO B 80 PRO B 81 0 4.44 CISPEP 3 ALA P 8 PRO P 9 0 -1.64 CISPEP 4 SER P 209 VAL P 210 0 -2.38 SITE 1 AC1 7 CYS B 43 HIS B 45 GLY B 46 CYS B 63 SITE 2 AC1 7 LEU B 65 HIS B 66 PRO B 82 SITE 1 AC2 22 GLY A 14 GLY A 16 LEU A 17 ALA A 18 SITE 2 AC2 22 GLY A 39 ASP A 40 GLU A 41 ARG A 48 SITE 3 AC2 22 PRO A 49 ALA A 82 ALA A 108 THR A 109 SITE 4 AC2 22 GLY A 110 ARG A 130 GLY A 272 ASP A 273 SITE 5 AC2 22 THR A 290 TRP A 291 SER A 292 ALA A 294 SITE 6 AC2 22 TYR A 319 TRP A 320 SITE 1 AC3 31 GLY P 14 GLY P 16 LEU P 17 ALA P 18 SITE 2 AC3 31 VAL P 38 ASP P 40 GLU P 41 ARG P 48 SITE 3 AC3 31 PRO P 49 LYS P 53 THR P 81 ALA P 82 SITE 4 AC3 31 ALA P 108 THR P 109 GLY P 110 ARG P 130 SITE 5 AC3 31 GLU P 159 GLY P 272 ASP P 273 GLU P 289 SITE 6 AC3 31 THR P 290 TRP P 291 ALA P 294 TYR P 319 SITE 7 AC3 31 TRP P 320 NAI P 504 HOH P 508 HOH P 522 SITE 8 AC3 31 HOH P 526 HOH P 527 HOH P 535 SITE 1 AC4 16 VAL A 151 GLY A 152 GLY A 153 GLY A 154 SITE 2 AC4 16 VAL A 155 ILE A 156 VAL A 174 GLU A 175 SITE 3 AC4 16 THR A 176 SER A 182 ARG A 183 GLY A 234 SITE 4 AC4 16 ILE A 235 GLY A 236 VAL A 237 GLU A 289 SITE 1 AC5 15 ARG P 114 GLY P 154 VAL P 155 ILE P 156 SITE 2 AC5 15 GLU P 175 THR P 176 GLN P 177 ARG P 183 SITE 3 AC5 15 GLY P 234 ILE P 235 GLY P 236 GLU P 289 SITE 4 AC5 15 FAD P 502 HOH P 519 HOH P 531 CRYST1 60.596 173.715 60.976 90.00 115.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016503 0.000000 0.007981 0.00000 SCALE2 0.000000 0.005757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018217 0.00000