data_2YVV # _entry.id 2YVV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YVV pdb_00002yvv 10.2210/pdb2yvv/pdb RCSB RCSB027199 ? ? WWPDB D_1000027199 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2DP5 _pdbx_database_related.details 'low resolution native structure' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YVV _pdbx_database_status.recvd_initial_deposition_date 2007-04-16 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mishra, P.' 1 'Prem Kumar, R.' 2 'Singh, N.' 3 'Sharma, S.' 4 'Kaur, P.' 5 'Perbandt, M.' 6 'Betzel, C.' 7 'Bhakuni, V.' 8 'Singh, T.P.' 9 # _citation.id primary _citation.title 'Crystal structure of hyluranidase complexed with lactose at 2.6 A resolution reveals three specific sugar recognition sites' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mishra, P.' 1 ? primary 'Prem Kumar, R.' 2 ? primary 'Singh, N.' 3 ? primary 'Sharma, S.' 4 ? primary 'Kaur, P.' 5 ? primary 'Perbandt, M.' 6 ? primary 'Betzel, C.' 7 ? primary 'Bhakuni, V.' 8 ? primary 'Singh, T.P.' 9 ? # _cell.entry_id 2YVV _cell.length_a 59.061 _cell.length_b 59.061 _cell.length_c 588.840 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YVV _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hyaluronidase, phage associated' 36468.934 1 4.2.2.1 ? ? ? 2 branched man 'beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose' 342.297 3 ? ? ? ? 3 water nat water 18.015 110 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name alpha-lactose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSENIPLRVQFKRMKAAEWARSDVILLESEIGFETDTGFARAGDGHNRFSDLGYISPLDYNLLTNKPNIDGLATKVETAQ KLQQKADKETVYTKAESKQELDKKLNLKGGVMTGQLKFKPAATVAYSSSTGGAVNIDLSSTRGAGVVVYSDNDTSDGPLM SLRTGKETFNQSALFVDYKGTTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQLRGSEKALGTLKITHENPSIGADYDK NAAALSIDIVKKTNGAGTAAQGIYINSTSGTTGKLLRIRNLSDDKFYVKSDGGFYAKETSQIDGNLKLKDPTANDHAATK AYVDKAISELKKLILKKH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSENIPLRVQFKRMKAAEWARSDVILLESEIGFETDTGFARAGDGHNRFSDLGYISPLDYNLLTNKPNIDGLATKVETAQ KLQQKADKETVYTKAESKQELDKKLNLKGGVMTGQLKFKPAATVAYSSSTGGAVNIDLSSTRGAGVVVYSDNDTSDGPLM SLRTGKETFNQSALFVDYKGTTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQLRGSEKALGTLKITHENPSIGADYDK NAAALSIDIVKKTNGAGTAAQGIYINSTSGTTGKLLRIRNLSDDKFYVKSDGGFYAKETSQIDGNLKLKDPTANDHAATK AYVDKAISELKKLILKKH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 GLU n 1 4 ASN n 1 5 ILE n 1 6 PRO n 1 7 LEU n 1 8 ARG n 1 9 VAL n 1 10 GLN n 1 11 PHE n 1 12 LYS n 1 13 ARG n 1 14 MET n 1 15 LYS n 1 16 ALA n 1 17 ALA n 1 18 GLU n 1 19 TRP n 1 20 ALA n 1 21 ARG n 1 22 SER n 1 23 ASP n 1 24 VAL n 1 25 ILE n 1 26 LEU n 1 27 LEU n 1 28 GLU n 1 29 SER n 1 30 GLU n 1 31 ILE n 1 32 GLY n 1 33 PHE n 1 34 GLU n 1 35 THR n 1 36 ASP n 1 37 THR n 1 38 GLY n 1 39 PHE n 1 40 ALA n 1 41 ARG n 1 42 ALA n 1 43 GLY n 1 44 ASP n 1 45 GLY n 1 46 HIS n 1 47 ASN n 1 48 ARG n 1 49 PHE n 1 50 SER n 1 51 ASP n 1 52 LEU n 1 53 GLY n 1 54 TYR n 1 55 ILE n 1 56 SER n 1 57 PRO n 1 58 LEU n 1 59 ASP n 1 60 TYR n 1 61 ASN n 1 62 LEU n 1 63 LEU n 1 64 THR n 1 65 ASN n 1 66 LYS n 1 67 PRO n 1 68 ASN n 1 69 ILE n 1 70 ASP n 1 71 GLY n 1 72 LEU n 1 73 ALA n 1 74 THR n 1 75 LYS n 1 76 VAL n 1 77 GLU n 1 78 THR n 1 79 ALA n 1 80 GLN n 1 81 LYS n 1 82 LEU n 1 83 GLN n 1 84 GLN n 1 85 LYS n 1 86 ALA n 1 87 ASP n 1 88 LYS n 1 89 GLU n 1 90 THR n 1 91 VAL n 1 92 TYR n 1 93 THR n 1 94 LYS n 1 95 ALA n 1 96 GLU n 1 97 SER n 1 98 LYS n 1 99 GLN n 1 100 GLU n 1 101 LEU n 1 102 ASP n 1 103 LYS n 1 104 LYS n 1 105 LEU n 1 106 ASN n 1 107 LEU n 1 108 LYS n 1 109 GLY n 1 110 GLY n 1 111 VAL n 1 112 MET n 1 113 THR n 1 114 GLY n 1 115 GLN n 1 116 LEU n 1 117 LYS n 1 118 PHE n 1 119 LYS n 1 120 PRO n 1 121 ALA n 1 122 ALA n 1 123 THR n 1 124 VAL n 1 125 ALA n 1 126 TYR n 1 127 SER n 1 128 SER n 1 129 SER n 1 130 THR n 1 131 GLY n 1 132 GLY n 1 133 ALA n 1 134 VAL n 1 135 ASN n 1 136 ILE n 1 137 ASP n 1 138 LEU n 1 139 SER n 1 140 SER n 1 141 THR n 1 142 ARG n 1 143 GLY n 1 144 ALA n 1 145 GLY n 1 146 VAL n 1 147 VAL n 1 148 VAL n 1 149 TYR n 1 150 SER n 1 151 ASP n 1 152 ASN n 1 153 ASP n 1 154 THR n 1 155 SER n 1 156 ASP n 1 157 GLY n 1 158 PRO n 1 159 LEU n 1 160 MET n 1 161 SER n 1 162 LEU n 1 163 ARG n 1 164 THR n 1 165 GLY n 1 166 LYS n 1 167 GLU n 1 168 THR n 1 169 PHE n 1 170 ASN n 1 171 GLN n 1 172 SER n 1 173 ALA n 1 174 LEU n 1 175 PHE n 1 176 VAL n 1 177 ASP n 1 178 TYR n 1 179 LYS n 1 180 GLY n 1 181 THR n 1 182 THR n 1 183 ASN n 1 184 ALA n 1 185 VAL n 1 186 ASN n 1 187 ILE n 1 188 ALA n 1 189 MET n 1 190 ARG n 1 191 GLN n 1 192 PRO n 1 193 THR n 1 194 THR n 1 195 PRO n 1 196 ASN n 1 197 PHE n 1 198 SER n 1 199 SER n 1 200 ALA n 1 201 LEU n 1 202 ASN n 1 203 ILE n 1 204 THR n 1 205 SER n 1 206 GLY n 1 207 ASN n 1 208 GLU n 1 209 ASN n 1 210 GLY n 1 211 SER n 1 212 ALA n 1 213 MET n 1 214 GLN n 1 215 LEU n 1 216 ARG n 1 217 GLY n 1 218 SER n 1 219 GLU n 1 220 LYS n 1 221 ALA n 1 222 LEU n 1 223 GLY n 1 224 THR n 1 225 LEU n 1 226 LYS n 1 227 ILE n 1 228 THR n 1 229 HIS n 1 230 GLU n 1 231 ASN n 1 232 PRO n 1 233 SER n 1 234 ILE n 1 235 GLY n 1 236 ALA n 1 237 ASP n 1 238 TYR n 1 239 ASP n 1 240 LYS n 1 241 ASN n 1 242 ALA n 1 243 ALA n 1 244 ALA n 1 245 LEU n 1 246 SER n 1 247 ILE n 1 248 ASP n 1 249 ILE n 1 250 VAL n 1 251 LYS n 1 252 LYS n 1 253 THR n 1 254 ASN n 1 255 GLY n 1 256 ALA n 1 257 GLY n 1 258 THR n 1 259 ALA n 1 260 ALA n 1 261 GLN n 1 262 GLY n 1 263 ILE n 1 264 TYR n 1 265 ILE n 1 266 ASN n 1 267 SER n 1 268 THR n 1 269 SER n 1 270 GLY n 1 271 THR n 1 272 THR n 1 273 GLY n 1 274 LYS n 1 275 LEU n 1 276 LEU n 1 277 ARG n 1 278 ILE n 1 279 ARG n 1 280 ASN n 1 281 LEU n 1 282 SER n 1 283 ASP n 1 284 ASP n 1 285 LYS n 1 286 PHE n 1 287 TYR n 1 288 VAL n 1 289 LYS n 1 290 SER n 1 291 ASP n 1 292 GLY n 1 293 GLY n 1 294 PHE n 1 295 TYR n 1 296 ALA n 1 297 LYS n 1 298 GLU n 1 299 THR n 1 300 SER n 1 301 GLN n 1 302 ILE n 1 303 ASP n 1 304 GLY n 1 305 ASN n 1 306 LEU n 1 307 LYS n 1 308 LEU n 1 309 LYS n 1 310 ASP n 1 311 PRO n 1 312 THR n 1 313 ALA n 1 314 ASN n 1 315 ASP n 1 316 HIS n 1 317 ALA n 1 318 ALA n 1 319 THR n 1 320 LYS n 1 321 ALA n 1 322 TYR n 1 323 VAL n 1 324 ASP n 1 325 LYS n 1 326 ALA n 1 327 ILE n 1 328 SER n 1 329 GLU n 1 330 LEU n 1 331 LYS n 1 332 LYS n 1 333 LEU n 1 334 ILE n 1 335 LEU n 1 336 LYS n 1 337 LYS n 1 338 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptococcus _entity_src_gen.pdbx_gene_src_gene 'HYL P2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pyogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1314 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET 21D' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9A0M7_STRP1 _struct_ref.pdbx_db_accession Q9A0M7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSENIPLRVQFKRMKAAEWARSDVILLESEIGFETDTGFARAGDGHNRFSDLGYISPLDYNLLTNKPNIDGLATKVETAQ KLQQKADKETVYTKAESKQELDKKLNLKGGVMTGQLKFKPAATVAYSSSTGGAVNIDLSSTRGAGVVVYSDNDTSDGPLM SLRTGKETFNQSALFVDYKGTTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQLRGSEKALGTLKITHENPSIGADYDK NAAALSIDIVKKTNGAGTAAQGIYINSTSGTTGKLLRIRNLSDDKFYVKSDGGFYAKETSQIDGNLKLKDPTANDHAATK AYVDKAISELKKLILKK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YVV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 337 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9A0M7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 337 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 337 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2YVV _struct_ref_seq_dif.mon_id HIS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 338 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9A0M7 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 338 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YVV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_percent_sol 54.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.pdbx_details 'TRIS HCL, SODIUM FORMATE, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 203 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-12-02 _diffrn_detector.details Mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.803 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.803 # _reflns.entry_id 2YVV _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.6 _reflns.d_resolution_low 50.0 _reflns.number_all 13012 _reflns.number_obs 13012 _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_sigmaI 6.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.224 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2YVV _refine.ls_number_reflns_obs 12203 _refine.ls_number_reflns_all 13012 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 98.94 _refine.ls_R_factor_obs 0.19345 _refine.ls_R_factor_all 0.19442 _refine.ls_R_factor_R_work 0.19111 _refine.ls_R_factor_R_free 0.22601 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 624 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.B_iso_mean 47.134 _refine.aniso_B[1][1] 2.79 _refine.aniso_B[2][2] 2.79 _refine.aniso_B[3][3] -4.19 _refine.aniso_B[1][2] 1.40 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 2DP5 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.695 _refine.pdbx_overall_ESU_R_Free 0.295 _refine.overall_SU_ML 0.195 _refine.overall_SU_B 8.858 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2515 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 69 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 2694 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 2621 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.626 1.998 ? 3541 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.539 5.000 ? 331 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.202 25.472 ? 106 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.242 15.000 ? 465 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24.998 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.106 0.200 ? 424 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1883 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.258 0.200 ? 806 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.326 0.200 ? 1773 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.206 0.200 ? 107 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.241 0.200 ? 405 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.193 0.200 ? 73 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.488 1.500 ? 1688 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.716 2.000 ? 2620 'X-RAY DIFFRACTION' ? r_scbond_it 5.512 3.000 ? 1038 'X-RAY DIFFRACTION' ? r_scangle_it 8.092 4.500 ? 921 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.597 _refine_ls_shell.d_res_low 2.664 _refine_ls_shell.number_reflns_R_work 878 _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.percent_reflns_obs 98.37 _refine_ls_shell.R_factor_R_free 0.274 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2YVV _struct.title 'Crystal structure of hyluranidase complexed with lactose at 2.6 A resolution reveals three specific sugar recognition sites' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YVV _struct_keywords.pdbx_keywords LYASE _struct_keywords.text 'HYALURONAN LYASE, Lactose, complex, HYALURONIDASE, LYASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? ALA A 20 ? LYS A 15 ALA A 20 1 ? 6 HELX_P HELX_P2 2 ARG A 48 ? LEU A 52 ? ARG A 48 LEU A 52 5 ? 5 HELX_P HELX_P3 3 ASP A 59 ? LEU A 63 ? ASP A 59 LEU A 63 5 ? 5 HELX_P HELX_P4 4 ASN A 68 ? LEU A 72 ? ASN A 68 LEU A 72 5 ? 5 HELX_P HELX_P5 5 THR A 74 ? GLN A 84 ? THR A 74 GLN A 84 1 ? 11 HELX_P HELX_P6 6 ASP A 87 ? VAL A 91 ? ASP A 87 VAL A 91 5 ? 5 HELX_P HELX_P7 7 THR A 93 ? ASP A 102 ? THR A 93 ASP A 102 1 ? 10 HELX_P HELX_P8 8 THR A 319 ? LYS A 336 ? THR A 319 LYS A 336 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GLC . O4 ? ? ? 1_555 B GAL . C1 ? ? B GLC 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.504 sing ? covale2 covale both ? C GLC . O4 ? ? ? 1_555 C GAL . C1 ? ? C GLC 1 C GAL 2 1_555 ? ? ? ? ? ? ? 1.419 sing ? covale3 covale both ? D GLC . O4 ? ? ? 1_555 D GAL . C1 ? ? D GLC 1 D GAL 2 1_555 ? ? ? ? ? ? ? 1.406 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 12 ? MET A 14 ? LYS A 12 MET A 14 A 2 ILE A 31 ? GLU A 34 ? ILE A 31 GLU A 34 A 3 ALA A 40 ? ALA A 42 ? ALA A 40 ALA A 42 B 1 LEU A 276 ? ASN A 280 ? LEU A 276 ASN A 280 B 2 ASP A 283 ? VAL A 288 ? ASP A 283 VAL A 288 B 3 PHE A 294 ? ALA A 296 ? PHE A 294 ALA A 296 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 12 ? N LYS A 12 O PHE A 33 ? O PHE A 33 A 2 3 N GLY A 32 ? N GLY A 32 O ARG A 41 ? O ARG A 41 B 1 2 N ILE A 278 ? N ILE A 278 O PHE A 286 ? O PHE A 286 B 2 3 N TYR A 287 ? N TYR A 287 O TYR A 295 ? O TYR A 295 # _database_PDB_matrix.entry_id 2YVV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YVV _atom_sites.fract_transf_matrix[1][1] 0.016932 _atom_sites.fract_transf_matrix[1][2] 0.009775 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019551 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.001698 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'LYS A 337 HAS WRONG CHIRALITY AT ATOM CA' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 GLU 3 3 ? ? ? A . n A 1 4 ASN 4 4 ? ? ? A . n A 1 5 ILE 5 5 ? ? ? A . n A 1 6 PRO 6 6 ? ? ? A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 TRP 19 19 19 TRP TRP A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 ASN 135 135 135 ASN ASN A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 TYR 149 149 149 TYR TYR A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 ASN 152 152 152 ASN ASN A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 MET 160 160 160 MET MET A . n A 1 161 SER 161 161 161 SER SER A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 ARG 163 163 163 ARG ARG A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 THR 168 168 168 THR THR A . n A 1 169 PHE 169 169 169 PHE PHE A . n A 1 170 ASN 170 170 170 ASN ASN A . n A 1 171 GLN 171 171 171 GLN GLN A . n A 1 172 SER 172 172 172 SER SER A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 TYR 178 178 178 TYR TYR A . n A 1 179 LYS 179 179 179 LYS LYS A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 ASN 183 183 183 ASN ASN A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 MET 189 189 189 MET MET A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 GLN 191 191 191 GLN GLN A . n A 1 192 PRO 192 192 192 PRO PRO A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 PRO 195 195 195 PRO PRO A . n A 1 196 ASN 196 196 196 ASN ASN A . n A 1 197 PHE 197 197 197 PHE PHE A . n A 1 198 SER 198 198 198 SER SER A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 ILE 203 203 203 ILE ILE A . n A 1 204 THR 204 204 204 THR THR A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 GLY 206 206 206 GLY GLY A . n A 1 207 ASN 207 207 207 ASN ASN A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 ASN 209 209 209 ASN ASN A . n A 1 210 GLY 210 210 210 GLY GLY A . n A 1 211 SER 211 211 211 SER SER A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 MET 213 213 213 MET MET A . n A 1 214 GLN 214 214 214 GLN GLN A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 ARG 216 216 216 ARG ARG A . n A 1 217 GLY 217 217 217 GLY GLY A . n A 1 218 SER 218 218 218 SER SER A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 LYS 220 220 220 LYS LYS A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 THR 224 224 224 THR THR A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 ILE 227 227 227 ILE ILE A . n A 1 228 THR 228 228 228 THR THR A . n A 1 229 HIS 229 229 229 HIS HIS A . n A 1 230 GLU 230 230 230 GLU GLU A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 PRO 232 232 232 PRO PRO A . n A 1 233 SER 233 233 233 SER SER A . n A 1 234 ILE 234 234 234 ILE ILE A . n A 1 235 GLY 235 235 235 GLY GLY A . n A 1 236 ALA 236 236 236 ALA ALA A . n A 1 237 ASP 237 237 237 ASP ASP A . n A 1 238 TYR 238 238 238 TYR TYR A . n A 1 239 ASP 239 239 239 ASP ASP A . n A 1 240 LYS 240 240 240 LYS LYS A . n A 1 241 ASN 241 241 241 ASN ASN A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 ALA 243 243 243 ALA ALA A . n A 1 244 ALA 244 244 244 ALA ALA A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 SER 246 246 246 SER SER A . n A 1 247 ILE 247 247 247 ILE ILE A . n A 1 248 ASP 248 248 248 ASP ASP A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 VAL 250 250 250 VAL VAL A . n A 1 251 LYS 251 251 251 LYS LYS A . n A 1 252 LYS 252 252 252 LYS LYS A . n A 1 253 THR 253 253 253 THR THR A . n A 1 254 ASN 254 254 254 ASN ASN A . n A 1 255 GLY 255 255 255 GLY GLY A . n A 1 256 ALA 256 256 256 ALA ALA A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 THR 258 258 258 THR THR A . n A 1 259 ALA 259 259 259 ALA ALA A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 GLN 261 261 261 GLN GLN A . n A 1 262 GLY 262 262 262 GLY GLY A . n A 1 263 ILE 263 263 263 ILE ILE A . n A 1 264 TYR 264 264 264 TYR TYR A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 ASN 266 266 266 ASN ASN A . n A 1 267 SER 267 267 267 SER SER A . n A 1 268 THR 268 268 268 THR THR A . n A 1 269 SER 269 269 269 SER SER A . n A 1 270 GLY 270 270 270 GLY GLY A . n A 1 271 THR 271 271 271 THR THR A . n A 1 272 THR 272 272 272 THR THR A . n A 1 273 GLY 273 273 273 GLY GLY A . n A 1 274 LYS 274 274 274 LYS LYS A . n A 1 275 LEU 275 275 275 LEU LEU A . n A 1 276 LEU 276 276 276 LEU LEU A . n A 1 277 ARG 277 277 277 ARG ARG A . n A 1 278 ILE 278 278 278 ILE ILE A . n A 1 279 ARG 279 279 279 ARG ARG A . n A 1 280 ASN 280 280 280 ASN ASN A . n A 1 281 LEU 281 281 281 LEU LEU A . n A 1 282 SER 282 282 282 SER SER A . n A 1 283 ASP 283 283 283 ASP ASP A . n A 1 284 ASP 284 284 284 ASP ASP A . n A 1 285 LYS 285 285 285 LYS LYS A . n A 1 286 PHE 286 286 286 PHE PHE A . n A 1 287 TYR 287 287 287 TYR TYR A . n A 1 288 VAL 288 288 288 VAL VAL A . n A 1 289 LYS 289 289 289 LYS LYS A . n A 1 290 SER 290 290 290 SER SER A . n A 1 291 ASP 291 291 291 ASP ASP A . n A 1 292 GLY 292 292 292 GLY GLY A . n A 1 293 GLY 293 293 293 GLY GLY A . n A 1 294 PHE 294 294 294 PHE PHE A . n A 1 295 TYR 295 295 295 TYR TYR A . n A 1 296 ALA 296 296 296 ALA ALA A . n A 1 297 LYS 297 297 297 LYS LYS A . n A 1 298 GLU 298 298 298 GLU GLU A . n A 1 299 THR 299 299 299 THR THR A . n A 1 300 SER 300 300 300 SER SER A . n A 1 301 GLN 301 301 301 GLN GLN A . n A 1 302 ILE 302 302 302 ILE ILE A . n A 1 303 ASP 303 303 303 ASP ASP A . n A 1 304 GLY 304 304 304 GLY GLY A . n A 1 305 ASN 305 305 305 ASN ASN A . n A 1 306 LEU 306 306 306 LEU LEU A . n A 1 307 LYS 307 307 307 LYS LYS A . n A 1 308 LEU 308 308 308 LEU LEU A . n A 1 309 LYS 309 309 309 LYS LYS A . n A 1 310 ASP 310 310 310 ASP ASP A . n A 1 311 PRO 311 311 311 PRO PRO A . n A 1 312 THR 312 312 312 THR THR A . n A 1 313 ALA 313 313 313 ALA ALA A . n A 1 314 ASN 314 314 314 ASN ASN A . n A 1 315 ASP 315 315 315 ASP ASP A . n A 1 316 HIS 316 316 316 HIS HIS A . n A 1 317 ALA 317 317 317 ALA ALA A . n A 1 318 ALA 318 318 318 ALA ALA A . n A 1 319 THR 319 319 319 THR THR A . n A 1 320 LYS 320 320 320 LYS LYS A . n A 1 321 ALA 321 321 321 ALA ALA A . n A 1 322 TYR 322 322 322 TYR TYR A . n A 1 323 VAL 323 323 323 VAL VAL A . n A 1 324 ASP 324 324 324 ASP ASP A . n A 1 325 LYS 325 325 325 LYS LYS A . n A 1 326 ALA 326 326 326 ALA ALA A . n A 1 327 ILE 327 327 327 ILE ILE A . n A 1 328 SER 328 328 328 SER SER A . n A 1 329 GLU 329 329 329 GLU GLU A . n A 1 330 LEU 330 330 330 LEU LEU A . n A 1 331 LYS 331 331 331 LYS LYS A . n A 1 332 LYS 332 332 332 LYS LYS A . n A 1 333 LEU 333 333 333 LEU LEU A . n A 1 334 ILE 334 334 334 ILE ILE A . n A 1 335 LEU 335 335 335 LEU LEU A . n A 1 336 LYS 336 336 336 LYS LYS A . n A 1 337 LYS 337 337 337 LYS LYS A . n A 1 338 HIS 338 338 338 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 3002 1 HOH HOH A . E 3 HOH 2 3003 2 HOH HOH A . E 3 HOH 3 3004 3 HOH HOH A . E 3 HOH 4 3005 4 HOH HOH A . E 3 HOH 5 3006 5 HOH HOH A . E 3 HOH 6 3007 6 HOH HOH A . E 3 HOH 7 3008 7 HOH HOH A . E 3 HOH 8 3009 8 HOH HOH A . E 3 HOH 9 3010 9 HOH HOH A . E 3 HOH 10 3011 10 HOH HOH A . E 3 HOH 11 3012 11 HOH HOH A . E 3 HOH 12 3013 12 HOH HOH A . E 3 HOH 13 3014 13 HOH HOH A . E 3 HOH 14 3015 14 HOH HOH A . E 3 HOH 15 3016 15 HOH HOH A . E 3 HOH 16 3017 16 HOH HOH A . E 3 HOH 17 3018 17 HOH HOH A . E 3 HOH 18 3019 18 HOH HOH A . E 3 HOH 19 3020 19 HOH HOH A . E 3 HOH 20 3021 20 HOH HOH A . E 3 HOH 21 3022 21 HOH HOH A . E 3 HOH 22 3023 22 HOH HOH A . E 3 HOH 23 3024 23 HOH HOH A . E 3 HOH 24 3025 24 HOH HOH A . E 3 HOH 25 3026 25 HOH HOH A . E 3 HOH 26 3027 26 HOH HOH A . E 3 HOH 27 3028 27 HOH HOH A . E 3 HOH 28 3029 28 HOH HOH A . E 3 HOH 29 3030 29 HOH HOH A . E 3 HOH 30 3031 30 HOH HOH A . E 3 HOH 31 3032 31 HOH HOH A . E 3 HOH 32 3033 32 HOH HOH A . E 3 HOH 33 3034 33 HOH HOH A . E 3 HOH 34 3035 34 HOH HOH A . E 3 HOH 35 3036 35 HOH HOH A . E 3 HOH 36 3037 36 HOH HOH A . E 3 HOH 37 3038 37 HOH HOH A . E 3 HOH 38 3039 38 HOH HOH A . E 3 HOH 39 3040 39 HOH HOH A . E 3 HOH 40 3041 40 HOH HOH A . E 3 HOH 41 3042 41 HOH HOH A . E 3 HOH 42 3043 42 HOH HOH A . E 3 HOH 43 3044 43 HOH HOH A . E 3 HOH 44 3045 44 HOH HOH A . E 3 HOH 45 3046 45 HOH HOH A . E 3 HOH 46 3047 46 HOH HOH A . E 3 HOH 47 3048 47 HOH HOH A . E 3 HOH 48 3049 48 HOH HOH A . E 3 HOH 49 3050 49 HOH HOH A . E 3 HOH 50 3051 50 HOH HOH A . E 3 HOH 51 3052 51 HOH HOH A . E 3 HOH 52 3053 52 HOH HOH A . E 3 HOH 53 3054 53 HOH HOH A . E 3 HOH 54 3055 54 HOH HOH A . E 3 HOH 55 3056 55 HOH HOH A . E 3 HOH 56 3057 56 HOH HOH A . E 3 HOH 57 3058 57 HOH HOH A . E 3 HOH 58 3059 58 HOH HOH A . E 3 HOH 59 3060 59 HOH HOH A . E 3 HOH 60 3061 60 HOH HOH A . E 3 HOH 61 3062 61 HOH HOH A . E 3 HOH 62 3063 62 HOH HOH A . E 3 HOH 63 3064 63 HOH HOH A . E 3 HOH 64 3065 64 HOH HOH A . E 3 HOH 65 3066 65 HOH HOH A . E 3 HOH 66 3067 66 HOH HOH A . E 3 HOH 67 3068 67 HOH HOH A . E 3 HOH 68 3069 68 HOH HOH A . E 3 HOH 69 3070 69 HOH HOH A . E 3 HOH 70 3071 70 HOH HOH A . E 3 HOH 71 3072 71 HOH HOH A . E 3 HOH 72 3073 72 HOH HOH A . E 3 HOH 73 3074 73 HOH HOH A . E 3 HOH 74 3075 74 HOH HOH A . E 3 HOH 75 3076 75 HOH HOH A . E 3 HOH 76 3077 76 HOH HOH A . E 3 HOH 77 3078 77 HOH HOH A . E 3 HOH 78 3079 78 HOH HOH A . E 3 HOH 79 3080 79 HOH HOH A . E 3 HOH 80 3081 80 HOH HOH A . E 3 HOH 81 3082 81 HOH HOH A . E 3 HOH 82 3083 82 HOH HOH A . E 3 HOH 83 3084 83 HOH HOH A . E 3 HOH 84 3085 84 HOH HOH A . E 3 HOH 85 3086 85 HOH HOH A . E 3 HOH 86 3087 86 HOH HOH A . E 3 HOH 87 3088 87 HOH HOH A . E 3 HOH 88 3089 88 HOH HOH A . E 3 HOH 89 3090 89 HOH HOH A . E 3 HOH 90 3091 90 HOH HOH A . E 3 HOH 91 3092 91 HOH HOH A . E 3 HOH 92 3093 92 HOH HOH A . E 3 HOH 93 3094 93 HOH HOH A . E 3 HOH 94 3095 94 HOH HOH A . E 3 HOH 95 3096 95 HOH HOH A . E 3 HOH 96 3097 96 HOH HOH A . E 3 HOH 97 3098 97 HOH HOH A . E 3 HOH 98 3099 98 HOH HOH A . E 3 HOH 99 3100 99 HOH HOH A . E 3 HOH 100 3101 100 HOH HOH A . E 3 HOH 101 3102 101 HOH HOH A . E 3 HOH 102 3103 102 HOH HOH A . E 3 HOH 103 3104 103 HOH HOH A . E 3 HOH 104 3105 104 HOH HOH A . E 3 HOH 105 3106 105 HOH HOH A . E 3 HOH 106 3107 106 HOH HOH A . E 3 HOH 107 3108 107 HOH HOH A . E 3 HOH 108 3109 108 HOH HOH A . E 3 HOH 109 3110 109 HOH HOH A . E 3 HOH 110 3111 110 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900008 _pdbx_molecule_features.name alpha-lactose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details oligosaccharide # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900008 B 2 PRD_900008 C 3 PRD_900008 D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 62850 ? 1 MORE -226 ? 1 'SSA (A^2)' 39890 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 59.0610000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 29.5305000000 -0.8660254038 -0.5000000000 0.0000000000 51.1483263729 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-10-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Non-polymer description' 10 4 'Structure model' 'Structure summary' 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Database references' 13 5 'Structure model' 'Refinement description' 14 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' diffrn_source 5 4 'Structure model' entity 6 4 'Structure model' entity_name_com 7 4 'Structure model' pdbx_branch_scheme 8 4 'Structure model' pdbx_chem_comp_identifier 9 4 'Structure model' pdbx_entity_branch 10 4 'Structure model' pdbx_entity_branch_descriptor 11 4 'Structure model' pdbx_entity_branch_link 12 4 'Structure model' pdbx_entity_branch_list 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' pdbx_molecule_features 15 4 'Structure model' pdbx_nonpoly_scheme 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_ref_seq_dif 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen 20 5 'Structure model' chem_comp 21 5 'Structure model' chem_comp_atom 22 5 'Structure model' chem_comp_bond 23 5 'Structure model' database_2 24 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_atom_id' 10 4 'Structure model' '_atom_site.label_comp_id' 11 4 'Structure model' '_chem_comp.formula' 12 4 'Structure model' '_chem_comp.formula_weight' 13 4 'Structure model' '_chem_comp.id' 14 4 'Structure model' '_chem_comp.mon_nstd_flag' 15 4 'Structure model' '_chem_comp.name' 16 4 'Structure model' '_chem_comp.type' 17 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 18 4 'Structure model' '_entity.formula_weight' 19 4 'Structure model' '_entity.pdbx_description' 20 4 'Structure model' '_entity.type' 21 4 'Structure model' '_struct_ref_seq_dif.details' 22 5 'Structure model' '_chem_comp.pdbx_synonyms' 23 5 'Structure model' '_database_2.pdbx_DOI' 24 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 AMoRE phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A SER 127 ? ? CA A SER 127 ? ? C A SER 127 ? ? 126.02 110.10 15.92 1.90 N 2 1 N A SER 198 ? ? CA A SER 198 ? ? C A SER 198 ? ? 88.60 111.00 -22.40 2.70 N 3 1 C A SER 198 ? ? N A SER 199 ? ? CA A SER 199 ? ? 143.26 121.70 21.56 2.50 Y 4 1 CB A LYS 336 ? ? CA A LYS 336 ? ? C A LYS 336 ? ? 95.14 110.40 -15.26 2.00 N 5 1 N A LYS 336 ? ? CA A LYS 336 ? ? C A LYS 336 ? ? 149.60 111.00 38.60 2.70 N 6 1 N A LYS 337 ? ? CA A LYS 337 ? ? C A LYS 337 ? ? 148.70 111.00 37.70 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 14 ? ? -170.17 -175.66 2 1 SER A 29 ? ? 70.95 -4.63 3 1 HIS A 46 ? ? -131.79 -46.52 4 1 ALA A 122 ? ? 75.04 92.52 5 1 VAL A 124 ? ? -161.05 -17.95 6 1 ALA A 125 ? ? 57.14 16.56 7 1 TYR A 126 ? ? 53.96 -154.53 8 1 SER A 128 ? ? 59.95 -140.82 9 1 SER A 129 ? ? -80.49 33.09 10 1 THR A 130 ? ? -150.40 8.76 11 1 THR A 182 ? ? -113.02 -163.74 12 1 GLN A 191 ? ? -46.19 104.77 13 1 PHE A 197 ? ? -99.76 47.84 14 1 ALA A 221 ? ? -145.60 25.69 15 1 ALA A 236 ? ? -38.66 -31.38 16 1 LYS A 336 ? ? 85.82 1.99 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 198 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 199 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -125.15 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id LYS _pdbx_validate_chiral.auth_seq_id 337 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A GLU 3 ? A GLU 3 4 1 Y 1 A ASN 4 ? A ASN 4 5 1 Y 1 A ILE 5 ? A ILE 5 6 1 Y 1 A PRO 6 ? A PRO 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GAL C1 C N R 74 GAL C2 C N R 75 GAL C3 C N S 76 GAL C4 C N R 77 GAL C5 C N R 78 GAL C6 C N N 79 GAL O1 O N N 80 GAL O2 O N N 81 GAL O3 O N N 82 GAL O4 O N N 83 GAL O5 O N N 84 GAL O6 O N N 85 GAL H1 H N N 86 GAL H2 H N N 87 GAL H3 H N N 88 GAL H4 H N N 89 GAL H5 H N N 90 GAL H61 H N N 91 GAL H62 H N N 92 GAL HO1 H N N 93 GAL HO2 H N N 94 GAL HO3 H N N 95 GAL HO4 H N N 96 GAL HO6 H N N 97 GLC C1 C N S 98 GLC C2 C N R 99 GLC C3 C N S 100 GLC C4 C N S 101 GLC C5 C N R 102 GLC C6 C N N 103 GLC O1 O N N 104 GLC O2 O N N 105 GLC O3 O N N 106 GLC O4 O N N 107 GLC O5 O N N 108 GLC O6 O N N 109 GLC H1 H N N 110 GLC H2 H N N 111 GLC H3 H N N 112 GLC H4 H N N 113 GLC H5 H N N 114 GLC H61 H N N 115 GLC H62 H N N 116 GLC HO1 H N N 117 GLC HO2 H N N 118 GLC HO3 H N N 119 GLC HO4 H N N 120 GLC HO6 H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 HIS N N N N 171 HIS CA C N S 172 HIS C C N N 173 HIS O O N N 174 HIS CB C N N 175 HIS CG C Y N 176 HIS ND1 N Y N 177 HIS CD2 C Y N 178 HIS CE1 C Y N 179 HIS NE2 N Y N 180 HIS OXT O N N 181 HIS H H N N 182 HIS H2 H N N 183 HIS HA H N N 184 HIS HB2 H N N 185 HIS HB3 H N N 186 HIS HD1 H N N 187 HIS HD2 H N N 188 HIS HE1 H N N 189 HIS HE2 H N N 190 HIS HXT H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 ILE N N N N 195 ILE CA C N S 196 ILE C C N N 197 ILE O O N N 198 ILE CB C N S 199 ILE CG1 C N N 200 ILE CG2 C N N 201 ILE CD1 C N N 202 ILE OXT O N N 203 ILE H H N N 204 ILE H2 H N N 205 ILE HA H N N 206 ILE HB H N N 207 ILE HG12 H N N 208 ILE HG13 H N N 209 ILE HG21 H N N 210 ILE HG22 H N N 211 ILE HG23 H N N 212 ILE HD11 H N N 213 ILE HD12 H N N 214 ILE HD13 H N N 215 ILE HXT H N N 216 LEU N N N N 217 LEU CA C N S 218 LEU C C N N 219 LEU O O N N 220 LEU CB C N N 221 LEU CG C N N 222 LEU CD1 C N N 223 LEU CD2 C N N 224 LEU OXT O N N 225 LEU H H N N 226 LEU H2 H N N 227 LEU HA H N N 228 LEU HB2 H N N 229 LEU HB3 H N N 230 LEU HG H N N 231 LEU HD11 H N N 232 LEU HD12 H N N 233 LEU HD13 H N N 234 LEU HD21 H N N 235 LEU HD22 H N N 236 LEU HD23 H N N 237 LEU HXT H N N 238 LYS N N N N 239 LYS CA C N S 240 LYS C C N N 241 LYS O O N N 242 LYS CB C N N 243 LYS CG C N N 244 LYS CD C N N 245 LYS CE C N N 246 LYS NZ N N N 247 LYS OXT O N N 248 LYS H H N N 249 LYS H2 H N N 250 LYS HA H N N 251 LYS HB2 H N N 252 LYS HB3 H N N 253 LYS HG2 H N N 254 LYS HG3 H N N 255 LYS HD2 H N N 256 LYS HD3 H N N 257 LYS HE2 H N N 258 LYS HE3 H N N 259 LYS HZ1 H N N 260 LYS HZ2 H N N 261 LYS HZ3 H N N 262 LYS HXT H N N 263 MET N N N N 264 MET CA C N S 265 MET C C N N 266 MET O O N N 267 MET CB C N N 268 MET CG C N N 269 MET SD S N N 270 MET CE C N N 271 MET OXT O N N 272 MET H H N N 273 MET H2 H N N 274 MET HA H N N 275 MET HB2 H N N 276 MET HB3 H N N 277 MET HG2 H N N 278 MET HG3 H N N 279 MET HE1 H N N 280 MET HE2 H N N 281 MET HE3 H N N 282 MET HXT H N N 283 PHE N N N N 284 PHE CA C N S 285 PHE C C N N 286 PHE O O N N 287 PHE CB C N N 288 PHE CG C Y N 289 PHE CD1 C Y N 290 PHE CD2 C Y N 291 PHE CE1 C Y N 292 PHE CE2 C Y N 293 PHE CZ C Y N 294 PHE OXT O N N 295 PHE H H N N 296 PHE H2 H N N 297 PHE HA H N N 298 PHE HB2 H N N 299 PHE HB3 H N N 300 PHE HD1 H N N 301 PHE HD2 H N N 302 PHE HE1 H N N 303 PHE HE2 H N N 304 PHE HZ H N N 305 PHE HXT H N N 306 PRO N N N N 307 PRO CA C N S 308 PRO C C N N 309 PRO O O N N 310 PRO CB C N N 311 PRO CG C N N 312 PRO CD C N N 313 PRO OXT O N N 314 PRO H H N N 315 PRO HA H N N 316 PRO HB2 H N N 317 PRO HB3 H N N 318 PRO HG2 H N N 319 PRO HG3 H N N 320 PRO HD2 H N N 321 PRO HD3 H N N 322 PRO HXT H N N 323 SER N N N N 324 SER CA C N S 325 SER C C N N 326 SER O O N N 327 SER CB C N N 328 SER OG O N N 329 SER OXT O N N 330 SER H H N N 331 SER H2 H N N 332 SER HA H N N 333 SER HB2 H N N 334 SER HB3 H N N 335 SER HG H N N 336 SER HXT H N N 337 THR N N N N 338 THR CA C N S 339 THR C C N N 340 THR O O N N 341 THR CB C N R 342 THR OG1 O N N 343 THR CG2 C N N 344 THR OXT O N N 345 THR H H N N 346 THR H2 H N N 347 THR HA H N N 348 THR HB H N N 349 THR HG1 H N N 350 THR HG21 H N N 351 THR HG22 H N N 352 THR HG23 H N N 353 THR HXT H N N 354 TRP N N N N 355 TRP CA C N S 356 TRP C C N N 357 TRP O O N N 358 TRP CB C N N 359 TRP CG C Y N 360 TRP CD1 C Y N 361 TRP CD2 C Y N 362 TRP NE1 N Y N 363 TRP CE2 C Y N 364 TRP CE3 C Y N 365 TRP CZ2 C Y N 366 TRP CZ3 C Y N 367 TRP CH2 C Y N 368 TRP OXT O N N 369 TRP H H N N 370 TRP H2 H N N 371 TRP HA H N N 372 TRP HB2 H N N 373 TRP HB3 H N N 374 TRP HD1 H N N 375 TRP HE1 H N N 376 TRP HE3 H N N 377 TRP HZ2 H N N 378 TRP HZ3 H N N 379 TRP HH2 H N N 380 TRP HXT H N N 381 TYR N N N N 382 TYR CA C N S 383 TYR C C N N 384 TYR O O N N 385 TYR CB C N N 386 TYR CG C Y N 387 TYR CD1 C Y N 388 TYR CD2 C Y N 389 TYR CE1 C Y N 390 TYR CE2 C Y N 391 TYR CZ C Y N 392 TYR OH O N N 393 TYR OXT O N N 394 TYR H H N N 395 TYR H2 H N N 396 TYR HA H N N 397 TYR HB2 H N N 398 TYR HB3 H N N 399 TYR HD1 H N N 400 TYR HD2 H N N 401 TYR HE1 H N N 402 TYR HE2 H N N 403 TYR HH H N N 404 TYR HXT H N N 405 VAL N N N N 406 VAL CA C N S 407 VAL C C N N 408 VAL O O N N 409 VAL CB C N N 410 VAL CG1 C N N 411 VAL CG2 C N N 412 VAL OXT O N N 413 VAL H H N N 414 VAL H2 H N N 415 VAL HA H N N 416 VAL HB H N N 417 VAL HG11 H N N 418 VAL HG12 H N N 419 VAL HG13 H N N 420 VAL HG21 H N N 421 VAL HG22 H N N 422 VAL HG23 H N N 423 VAL HXT H N N 424 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GAL C1 C2 sing N N 70 GAL C1 O1 sing N N 71 GAL C1 O5 sing N N 72 GAL C1 H1 sing N N 73 GAL C2 C3 sing N N 74 GAL C2 O2 sing N N 75 GAL C2 H2 sing N N 76 GAL C3 C4 sing N N 77 GAL C3 O3 sing N N 78 GAL C3 H3 sing N N 79 GAL C4 C5 sing N N 80 GAL C4 O4 sing N N 81 GAL C4 H4 sing N N 82 GAL C5 C6 sing N N 83 GAL C5 O5 sing N N 84 GAL C5 H5 sing N N 85 GAL C6 O6 sing N N 86 GAL C6 H61 sing N N 87 GAL C6 H62 sing N N 88 GAL O1 HO1 sing N N 89 GAL O2 HO2 sing N N 90 GAL O3 HO3 sing N N 91 GAL O4 HO4 sing N N 92 GAL O6 HO6 sing N N 93 GLC C1 C2 sing N N 94 GLC C1 O1 sing N N 95 GLC C1 O5 sing N N 96 GLC C1 H1 sing N N 97 GLC C2 C3 sing N N 98 GLC C2 O2 sing N N 99 GLC C2 H2 sing N N 100 GLC C3 C4 sing N N 101 GLC C3 O3 sing N N 102 GLC C3 H3 sing N N 103 GLC C4 C5 sing N N 104 GLC C4 O4 sing N N 105 GLC C4 H4 sing N N 106 GLC C5 C6 sing N N 107 GLC C5 O5 sing N N 108 GLC C5 H5 sing N N 109 GLC C6 O6 sing N N 110 GLC C6 H61 sing N N 111 GLC C6 H62 sing N N 112 GLC O1 HO1 sing N N 113 GLC O2 HO2 sing N N 114 GLC O3 HO3 sing N N 115 GLC O4 HO4 sing N N 116 GLC O6 HO6 sing N N 117 GLN N CA sing N N 118 GLN N H sing N N 119 GLN N H2 sing N N 120 GLN CA C sing N N 121 GLN CA CB sing N N 122 GLN CA HA sing N N 123 GLN C O doub N N 124 GLN C OXT sing N N 125 GLN CB CG sing N N 126 GLN CB HB2 sing N N 127 GLN CB HB3 sing N N 128 GLN CG CD sing N N 129 GLN CG HG2 sing N N 130 GLN CG HG3 sing N N 131 GLN CD OE1 doub N N 132 GLN CD NE2 sing N N 133 GLN NE2 HE21 sing N N 134 GLN NE2 HE22 sing N N 135 GLN OXT HXT sing N N 136 GLU N CA sing N N 137 GLU N H sing N N 138 GLU N H2 sing N N 139 GLU CA C sing N N 140 GLU CA CB sing N N 141 GLU CA HA sing N N 142 GLU C O doub N N 143 GLU C OXT sing N N 144 GLU CB CG sing N N 145 GLU CB HB2 sing N N 146 GLU CB HB3 sing N N 147 GLU CG CD sing N N 148 GLU CG HG2 sing N N 149 GLU CG HG3 sing N N 150 GLU CD OE1 doub N N 151 GLU CD OE2 sing N N 152 GLU OE2 HE2 sing N N 153 GLU OXT HXT sing N N 154 GLY N CA sing N N 155 GLY N H sing N N 156 GLY N H2 sing N N 157 GLY CA C sing N N 158 GLY CA HA2 sing N N 159 GLY CA HA3 sing N N 160 GLY C O doub N N 161 GLY C OXT sing N N 162 GLY OXT HXT sing N N 163 HIS N CA sing N N 164 HIS N H sing N N 165 HIS N H2 sing N N 166 HIS CA C sing N N 167 HIS CA CB sing N N 168 HIS CA HA sing N N 169 HIS C O doub N N 170 HIS C OXT sing N N 171 HIS CB CG sing N N 172 HIS CB HB2 sing N N 173 HIS CB HB3 sing N N 174 HIS CG ND1 sing Y N 175 HIS CG CD2 doub Y N 176 HIS ND1 CE1 doub Y N 177 HIS ND1 HD1 sing N N 178 HIS CD2 NE2 sing Y N 179 HIS CD2 HD2 sing N N 180 HIS CE1 NE2 sing Y N 181 HIS CE1 HE1 sing N N 182 HIS NE2 HE2 sing N N 183 HIS OXT HXT sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 ILE N CA sing N N 187 ILE N H sing N N 188 ILE N H2 sing N N 189 ILE CA C sing N N 190 ILE CA CB sing N N 191 ILE CA HA sing N N 192 ILE C O doub N N 193 ILE C OXT sing N N 194 ILE CB CG1 sing N N 195 ILE CB CG2 sing N N 196 ILE CB HB sing N N 197 ILE CG1 CD1 sing N N 198 ILE CG1 HG12 sing N N 199 ILE CG1 HG13 sing N N 200 ILE CG2 HG21 sing N N 201 ILE CG2 HG22 sing N N 202 ILE CG2 HG23 sing N N 203 ILE CD1 HD11 sing N N 204 ILE CD1 HD12 sing N N 205 ILE CD1 HD13 sing N N 206 ILE OXT HXT sing N N 207 LEU N CA sing N N 208 LEU N H sing N N 209 LEU N H2 sing N N 210 LEU CA C sing N N 211 LEU CA CB sing N N 212 LEU CA HA sing N N 213 LEU C O doub N N 214 LEU C OXT sing N N 215 LEU CB CG sing N N 216 LEU CB HB2 sing N N 217 LEU CB HB3 sing N N 218 LEU CG CD1 sing N N 219 LEU CG CD2 sing N N 220 LEU CG HG sing N N 221 LEU CD1 HD11 sing N N 222 LEU CD1 HD12 sing N N 223 LEU CD1 HD13 sing N N 224 LEU CD2 HD21 sing N N 225 LEU CD2 HD22 sing N N 226 LEU CD2 HD23 sing N N 227 LEU OXT HXT sing N N 228 LYS N CA sing N N 229 LYS N H sing N N 230 LYS N H2 sing N N 231 LYS CA C sing N N 232 LYS CA CB sing N N 233 LYS CA HA sing N N 234 LYS C O doub N N 235 LYS C OXT sing N N 236 LYS CB CG sing N N 237 LYS CB HB2 sing N N 238 LYS CB HB3 sing N N 239 LYS CG CD sing N N 240 LYS CG HG2 sing N N 241 LYS CG HG3 sing N N 242 LYS CD CE sing N N 243 LYS CD HD2 sing N N 244 LYS CD HD3 sing N N 245 LYS CE NZ sing N N 246 LYS CE HE2 sing N N 247 LYS CE HE3 sing N N 248 LYS NZ HZ1 sing N N 249 LYS NZ HZ2 sing N N 250 LYS NZ HZ3 sing N N 251 LYS OXT HXT sing N N 252 MET N CA sing N N 253 MET N H sing N N 254 MET N H2 sing N N 255 MET CA C sing N N 256 MET CA CB sing N N 257 MET CA HA sing N N 258 MET C O doub N N 259 MET C OXT sing N N 260 MET CB CG sing N N 261 MET CB HB2 sing N N 262 MET CB HB3 sing N N 263 MET CG SD sing N N 264 MET CG HG2 sing N N 265 MET CG HG3 sing N N 266 MET SD CE sing N N 267 MET CE HE1 sing N N 268 MET CE HE2 sing N N 269 MET CE HE3 sing N N 270 MET OXT HXT sing N N 271 PHE N CA sing N N 272 PHE N H sing N N 273 PHE N H2 sing N N 274 PHE CA C sing N N 275 PHE CA CB sing N N 276 PHE CA HA sing N N 277 PHE C O doub N N 278 PHE C OXT sing N N 279 PHE CB CG sing N N 280 PHE CB HB2 sing N N 281 PHE CB HB3 sing N N 282 PHE CG CD1 doub Y N 283 PHE CG CD2 sing Y N 284 PHE CD1 CE1 sing Y N 285 PHE CD1 HD1 sing N N 286 PHE CD2 CE2 doub Y N 287 PHE CD2 HD2 sing N N 288 PHE CE1 CZ doub Y N 289 PHE CE1 HE1 sing N N 290 PHE CE2 CZ sing Y N 291 PHE CE2 HE2 sing N N 292 PHE CZ HZ sing N N 293 PHE OXT HXT sing N N 294 PRO N CA sing N N 295 PRO N CD sing N N 296 PRO N H sing N N 297 PRO CA C sing N N 298 PRO CA CB sing N N 299 PRO CA HA sing N N 300 PRO C O doub N N 301 PRO C OXT sing N N 302 PRO CB CG sing N N 303 PRO CB HB2 sing N N 304 PRO CB HB3 sing N N 305 PRO CG CD sing N N 306 PRO CG HG2 sing N N 307 PRO CG HG3 sing N N 308 PRO CD HD2 sing N N 309 PRO CD HD3 sing N N 310 PRO OXT HXT sing N N 311 SER N CA sing N N 312 SER N H sing N N 313 SER N H2 sing N N 314 SER CA C sing N N 315 SER CA CB sing N N 316 SER CA HA sing N N 317 SER C O doub N N 318 SER C OXT sing N N 319 SER CB OG sing N N 320 SER CB HB2 sing N N 321 SER CB HB3 sing N N 322 SER OG HG sing N N 323 SER OXT HXT sing N N 324 THR N CA sing N N 325 THR N H sing N N 326 THR N H2 sing N N 327 THR CA C sing N N 328 THR CA CB sing N N 329 THR CA HA sing N N 330 THR C O doub N N 331 THR C OXT sing N N 332 THR CB OG1 sing N N 333 THR CB CG2 sing N N 334 THR CB HB sing N N 335 THR OG1 HG1 sing N N 336 THR CG2 HG21 sing N N 337 THR CG2 HG22 sing N N 338 THR CG2 HG23 sing N N 339 THR OXT HXT sing N N 340 TRP N CA sing N N 341 TRP N H sing N N 342 TRP N H2 sing N N 343 TRP CA C sing N N 344 TRP CA CB sing N N 345 TRP CA HA sing N N 346 TRP C O doub N N 347 TRP C OXT sing N N 348 TRP CB CG sing N N 349 TRP CB HB2 sing N N 350 TRP CB HB3 sing N N 351 TRP CG CD1 doub Y N 352 TRP CG CD2 sing Y N 353 TRP CD1 NE1 sing Y N 354 TRP CD1 HD1 sing N N 355 TRP CD2 CE2 doub Y N 356 TRP CD2 CE3 sing Y N 357 TRP NE1 CE2 sing Y N 358 TRP NE1 HE1 sing N N 359 TRP CE2 CZ2 sing Y N 360 TRP CE3 CZ3 doub Y N 361 TRP CE3 HE3 sing N N 362 TRP CZ2 CH2 doub Y N 363 TRP CZ2 HZ2 sing N N 364 TRP CZ3 CH2 sing Y N 365 TRP CZ3 HZ3 sing N N 366 TRP CH2 HH2 sing N N 367 TRP OXT HXT sing N N 368 TYR N CA sing N N 369 TYR N H sing N N 370 TYR N H2 sing N N 371 TYR CA C sing N N 372 TYR CA CB sing N N 373 TYR CA HA sing N N 374 TYR C O doub N N 375 TYR C OXT sing N N 376 TYR CB CG sing N N 377 TYR CB HB2 sing N N 378 TYR CB HB3 sing N N 379 TYR CG CD1 doub Y N 380 TYR CG CD2 sing Y N 381 TYR CD1 CE1 sing Y N 382 TYR CD1 HD1 sing N N 383 TYR CD2 CE2 doub Y N 384 TYR CD2 HD2 sing N N 385 TYR CE1 CZ doub Y N 386 TYR CE1 HE1 sing N N 387 TYR CE2 CZ sing Y N 388 TYR CE2 HE2 sing N N 389 TYR CZ OH sing N N 390 TYR OH HH sing N N 391 TYR OXT HXT sing N N 392 VAL N CA sing N N 393 VAL N H sing N N 394 VAL N H2 sing N N 395 VAL CA C sing N N 396 VAL CA CB sing N N 397 VAL CA HA sing N N 398 VAL C O doub N N 399 VAL C OXT sing N N 400 VAL CB CG1 sing N N 401 VAL CB CG2 sing N N 402 VAL CB HB sing N N 403 VAL CG1 HG11 sing N N 404 VAL CG1 HG12 sing N N 405 VAL CG1 HG13 sing N N 406 VAL CG2 HG21 sing N N 407 VAL CG2 HG22 sing N N 408 VAL CG2 HG23 sing N N 409 VAL OXT HXT sing N N 410 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 D LAT 1 n B 2 GAL 2 B GAL 2 D LAT 1 n C 2 GLC 1 C GLC 1 E LAT 1 n C 2 GAL 2 C GAL 2 E LAT 1 n D 2 GLC 1 D GLC 1 F LAT 1 n D 2 GAL 2 D GAL 2 F LAT 1 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGalpb1-4DGlcpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2122h-1a_1-5][a2112h-1b_1-5]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Glcp]{[(4+1)][b-D-Galp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 GAL 2 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2DP5 _pdbx_initial_refinement_model.details ? #