HEADER LYASE 16-APR-07 2YVV TITLE CRYSTAL STRUCTURE OF HYLURANIDASE COMPLEXED WITH LACTOSE AT 2.6 A TITLE 2 RESOLUTION REVEALS THREE SPECIFIC SUGAR RECOGNITION SITES CAVEAT 2YVV LYS A 337 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYALURONIDASE, PHAGE ASSOCIATED; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: HYL P2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21D KEYWDS HYALURONAN LYASE, LACTOSE, COMPLEX, HYALURONIDASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MISHRA,R.PREM KUMAR,N.SINGH,S.SHARMA,P.KAUR,M.PERBANDT,C.BETZEL, AUTHOR 2 V.BHAKUNI,T.P.SINGH REVDAT 6 25-OCT-23 2YVV 1 HETSYN REVDAT 5 29-JUL-20 2YVV 1 CAVEAT COMPND REMARK SEQADV REVDAT 5 2 1 HET HETNAM FORMUL LINK REVDAT 5 3 1 SITE ATOM REVDAT 4 13-JUL-11 2YVV 1 VERSN REVDAT 3 13-OCT-09 2YVV 1 HETNAM REVDAT 2 24-FEB-09 2YVV 1 VERSN REVDAT 1 01-MAY-07 2YVV 0 JRNL AUTH P.MISHRA,R.PREM KUMAR,N.SINGH,S.SHARMA,P.KAUR,M.PERBANDT, JRNL AUTH 2 C.BETZEL,V.BHAKUNI,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF HYLURANIDASE COMPLEXED WITH LACTOSE AT JRNL TITL 2 2.6 A RESOLUTION REVEALS THREE SPECIFIC SUGAR RECOGNITION JRNL TITL 3 SITES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 12203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2515 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.79000 REMARK 3 B22 (A**2) : 2.79000 REMARK 3 B33 (A**2) : -4.19000 REMARK 3 B12 (A**2) : 1.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.695 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.195 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2621 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3541 ; 1.626 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 6.539 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;38.202 ;25.472 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;18.242 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;24.998 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1883 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 806 ; 0.258 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1773 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 405 ; 0.241 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 73 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1688 ; 2.488 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2620 ; 3.716 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1038 ; 5.512 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 921 ; 8.092 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000027199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 203 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.803 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13012 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22400 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2DP5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL, SODIUM FORMATE, PH 7.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 29.53050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 17.04944 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 196.28000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 29.53050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 17.04944 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 196.28000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 29.53050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 17.04944 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 196.28000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 29.53050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 17.04944 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 196.28000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 29.53050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 17.04944 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 196.28000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 29.53050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 17.04944 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 196.28000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 34.09888 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 392.56000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 34.09888 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 392.56000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 34.09888 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 392.56000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 34.09888 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 392.56000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 34.09888 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 392.56000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 34.09888 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 392.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 62850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -226.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 59.06100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 29.53050 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 51.14833 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 PRO A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 127 CB - CA - C ANGL. DEV. = 15.9 DEGREES REMARK 500 SER A 198 N - CA - C ANGL. DEV. = -22.4 DEGREES REMARK 500 SER A 199 C - N - CA ANGL. DEV. = 21.6 DEGREES REMARK 500 LYS A 336 CB - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 LYS A 336 N - CA - C ANGL. DEV. = 38.6 DEGREES REMARK 500 LYS A 337 N - CA - C ANGL. DEV. = 37.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 14 -175.66 -170.17 REMARK 500 SER A 29 -4.63 70.95 REMARK 500 HIS A 46 -46.52 -131.79 REMARK 500 ALA A 122 92.52 75.04 REMARK 500 VAL A 124 -17.95 -161.05 REMARK 500 ALA A 125 16.56 57.14 REMARK 500 TYR A 126 -154.53 53.96 REMARK 500 SER A 128 -140.82 59.95 REMARK 500 SER A 129 33.09 -80.49 REMARK 500 THR A 130 8.76 -150.40 REMARK 500 THR A 182 -163.74 -113.02 REMARK 500 GLN A 191 104.77 -46.19 REMARK 500 PHE A 197 47.84 -99.76 REMARK 500 ALA A 221 25.69 -145.60 REMARK 500 ALA A 236 -31.38 -38.66 REMARK 500 LYS A 336 1.99 85.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 198 SER A 199 -125.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DP5 RELATED DB: PDB REMARK 900 LOW RESOLUTION NATIVE STRUCTURE DBREF 2YVV A 1 337 UNP Q9A0M7 Q9A0M7_STRP1 1 337 SEQADV 2YVV HIS A 338 UNP Q9A0M7 EXPRESSION TAG SEQRES 1 A 338 MET SER GLU ASN ILE PRO LEU ARG VAL GLN PHE LYS ARG SEQRES 2 A 338 MET LYS ALA ALA GLU TRP ALA ARG SER ASP VAL ILE LEU SEQRES 3 A 338 LEU GLU SER GLU ILE GLY PHE GLU THR ASP THR GLY PHE SEQRES 4 A 338 ALA ARG ALA GLY ASP GLY HIS ASN ARG PHE SER ASP LEU SEQRES 5 A 338 GLY TYR ILE SER PRO LEU ASP TYR ASN LEU LEU THR ASN SEQRES 6 A 338 LYS PRO ASN ILE ASP GLY LEU ALA THR LYS VAL GLU THR SEQRES 7 A 338 ALA GLN LYS LEU GLN GLN LYS ALA ASP LYS GLU THR VAL SEQRES 8 A 338 TYR THR LYS ALA GLU SER LYS GLN GLU LEU ASP LYS LYS SEQRES 9 A 338 LEU ASN LEU LYS GLY GLY VAL MET THR GLY GLN LEU LYS SEQRES 10 A 338 PHE LYS PRO ALA ALA THR VAL ALA TYR SER SER SER THR SEQRES 11 A 338 GLY GLY ALA VAL ASN ILE ASP LEU SER SER THR ARG GLY SEQRES 12 A 338 ALA GLY VAL VAL VAL TYR SER ASP ASN ASP THR SER ASP SEQRES 13 A 338 GLY PRO LEU MET SER LEU ARG THR GLY LYS GLU THR PHE SEQRES 14 A 338 ASN GLN SER ALA LEU PHE VAL ASP TYR LYS GLY THR THR SEQRES 15 A 338 ASN ALA VAL ASN ILE ALA MET ARG GLN PRO THR THR PRO SEQRES 16 A 338 ASN PHE SER SER ALA LEU ASN ILE THR SER GLY ASN GLU SEQRES 17 A 338 ASN GLY SER ALA MET GLN LEU ARG GLY SER GLU LYS ALA SEQRES 18 A 338 LEU GLY THR LEU LYS ILE THR HIS GLU ASN PRO SER ILE SEQRES 19 A 338 GLY ALA ASP TYR ASP LYS ASN ALA ALA ALA LEU SER ILE SEQRES 20 A 338 ASP ILE VAL LYS LYS THR ASN GLY ALA GLY THR ALA ALA SEQRES 21 A 338 GLN GLY ILE TYR ILE ASN SER THR SER GLY THR THR GLY SEQRES 22 A 338 LYS LEU LEU ARG ILE ARG ASN LEU SER ASP ASP LYS PHE SEQRES 23 A 338 TYR VAL LYS SER ASP GLY GLY PHE TYR ALA LYS GLU THR SEQRES 24 A 338 SER GLN ILE ASP GLY ASN LEU LYS LEU LYS ASP PRO THR SEQRES 25 A 338 ALA ASN ASP HIS ALA ALA THR LYS ALA TYR VAL ASP LYS SEQRES 26 A 338 ALA ILE SER GLU LEU LYS LYS LEU ILE LEU LYS LYS HIS HET GLC B 1 12 HET GAL B 2 11 HET GLC C 1 12 HET GAL C 2 11 HET GLC D 1 12 HET GAL D 2 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 GLC 3(C6 H12 O6) FORMUL 2 GAL 3(C6 H12 O6) FORMUL 5 HOH *110(H2 O) HELIX 1 1 LYS A 15 ALA A 20 1 6 HELIX 2 2 ARG A 48 LEU A 52 5 5 HELIX 3 3 ASP A 59 LEU A 63 5 5 HELIX 4 4 ASN A 68 LEU A 72 5 5 HELIX 5 5 THR A 74 GLN A 84 1 11 HELIX 6 6 ASP A 87 VAL A 91 5 5 HELIX 7 7 THR A 93 ASP A 102 1 10 HELIX 8 8 THR A 319 LYS A 336 1 18 SHEET 1 A 3 LYS A 12 MET A 14 0 SHEET 2 A 3 ILE A 31 GLU A 34 1 O PHE A 33 N LYS A 12 SHEET 3 A 3 ALA A 40 ALA A 42 -1 O ARG A 41 N GLY A 32 SHEET 1 B 3 LEU A 276 ASN A 280 0 SHEET 2 B 3 ASP A 283 VAL A 288 -1 O PHE A 286 N ILE A 278 SHEET 3 B 3 PHE A 294 ALA A 296 -1 O TYR A 295 N TYR A 287 LINK O4 GLC B 1 C1 GAL B 2 1555 1555 1.50 LINK O4 GLC C 1 C1 GAL C 2 1555 1555 1.42 LINK O4 GLC D 1 C1 GAL D 2 1555 1555 1.41 CRYST1 59.061 59.061 588.840 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016932 0.009775 0.000000 0.00000 SCALE2 0.000000 0.019551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001698 0.00000