HEADER LIGASE 19-APR-07 2YW2 TITLE CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM AQUIFEX AEOLICUS IN COMPLEX TITLE 2 WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINE--GLYCINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GARS, GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE, COMPND 5 PHOSPHORIBOSYLGLYCINAMIDE SYNTHETASE; COMPND 6 EC: 6.3.4.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE, GAR SYNTHETASE, ATP BINDING, KEYWDS 2 PURINE NUCLEOTIDE BIOSYNTHETIC PATHWAY, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BABA,M.KANAGAWA,S.KURAMITSU,S.YOKOYAMA,G.KAWAI,G.SAMPEI,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2YW2 1 REMARK REVDAT 3 08-DEC-10 2YW2 1 JRNL REVDAT 2 24-FEB-09 2YW2 1 VERSN REVDAT 1 23-OCT-07 2YW2 0 JRNL AUTH G.SAMPEI,S.BABA,M.KANAGAWA,H.YANAI,T.ISHII,H.KAWAI,Y.FUKAI, JRNL AUTH 2 A.EBIHARA,N.NAKAGAWA,G.KAWAI JRNL TITL CRYSTAL STRUCTURES OF GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE, JRNL TITL 2 PURD, FROM THERMOPHILIC EUBACTERIA JRNL REF J.BIOCHEM. V. 148 429 2010 JRNL REFN ISSN 0021-924X JRNL PMID 20716513 JRNL DOI 10.1093/JB/MVQ088 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 143384.280 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 76900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 7732 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10307 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.20000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : -0.73000 REMARK 3 B13 (A**2) : -1.56000 REMARK 3 B23 (A**2) : -2.29000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.090 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.780 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.930 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 9.010 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 46.33 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ATP_XPLOR.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ATP_XPLOR.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI 111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79536 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GSO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE-CITRATE, 40% MPD, 10MM REMARK 280 ATP, PH 4.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 37.86317 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -40.49616 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -85.68070 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 424 REMARK 465 GLU B 424 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 31 O - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 GLU A 240 CA - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 GLU A 240 O - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 GLY A 364 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 ALA B 31 O - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 GLY B 364 C - N - CA ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 237 77.84 -106.98 REMARK 500 VAL A 286 40.23 -85.89 REMARK 500 ALA A 363 -65.54 -124.40 REMARK 500 ALA B 148 38.44 -146.85 REMARK 500 VAL B 286 39.98 -85.94 REMARK 500 GLU B 338 -168.21 -75.27 REMARK 500 ALA B 363 -66.21 -121.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 43 0.27 SIDE CHAIN REMARK 500 ARG B 265 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 32 19.93 REMARK 500 GLU A 338 10.01 REMARK 500 ALA A 363 -17.22 REMARK 500 ALA B 363 -12.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 645 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 646 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 646 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 647 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GSO RELATED DB: PDB REMARK 900 GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE (GAR-SYN) FROM E. COLI REMARK 900 RELATED ID: AAE001000742.1 RELATED DB: TARGETDB DBREF 2YW2 A 1 424 UNP O66949 PUR2_AQUAE 1 424 DBREF 2YW2 B 1 424 UNP O66949 PUR2_AQUAE 1 424 SEQRES 1 A 424 MET LYS VAL LEU VAL VAL GLY ASN GLY GLY ARG GLU HIS SEQRES 2 A 424 ALA ILE ALA TRP LYS VAL ALA GLN SER PRO LEU VAL LYS SEQRES 3 A 424 GLU LEU TYR VAL ALA LYS GLY ASN ALA GLY ILE TRP GLU SEQRES 4 A 424 ILE ALA LYS ARG VAL ASP ILE SER PRO THR ASP VAL GLU SEQRES 5 A 424 LYS LEU ALA GLU PHE ALA LYS ASN GLU GLY VAL ASP PHE SEQRES 6 A 424 THR ILE VAL GLY PRO GLU ALA PRO LEU VAL GLU GLY ILE SEQRES 7 A 424 VAL ASP GLU PHE GLU LYS ARG GLY LEU LYS ILE PHE GLY SEQRES 8 A 424 PRO ASN LYS GLU ALA ALA LYS LEU GLU GLY SER LYS ALA SEQRES 9 A 424 PHE ALA LYS THR PHE MET LYS LYS TYR GLY ILE PRO THR SEQRES 10 A 424 ALA ARG TYR GLU VAL PHE THR ASP PHE GLU LYS ALA LYS SEQRES 11 A 424 GLU TYR VAL GLU LYS VAL GLY ALA PRO ILE VAL VAL LYS SEQRES 12 A 424 ALA ASP GLY LEU ALA ALA GLY LYS GLY ALA VAL VAL CYS SEQRES 13 A 424 GLU THR VAL GLU LYS ALA ILE GLU THR LEU ASP ARG PHE SEQRES 14 A 424 LEU ASN LYS LYS ILE PHE GLY LYS SER SER GLU ARG VAL SEQRES 15 A 424 VAL ILE GLU GLU PHE LEU GLU GLY GLU GLU ALA SER TYR SEQRES 16 A 424 ILE VAL MET ILE ASN GLY ASP ARG TYR VAL PRO LEU PRO SEQRES 17 A 424 THR SER GLN ASP HIS LYS ARG LEU LEU ASP GLU ASP LYS SEQRES 18 A 424 GLY PRO ASN THR GLY GLY MET GLY ALA TYR SER PRO THR SEQRES 19 A 424 PRO VAL ILE ASN GLU GLU VAL GLU LYS ARG ILE ARG GLU SEQRES 20 A 424 GLU ILE VAL GLU ARG VAL ILE LYS GLY LEU LYS GLU GLU SEQRES 21 A 424 GLY ILE TYR TYR ARG GLY PHE LEU TYR ALA GLY LEU MET SEQRES 22 A 424 ILE THR LYS GLU GLY PRO LYS VAL LEU GLU PHE ASN VAL SEQRES 23 A 424 ARG LEU GLY ASP PRO GLU ALA GLN PRO ILE LEU MET ARG SEQRES 24 A 424 VAL LYS ASN ASP PHE LEU GLU THR LEU LEU ASN PHE TYR SEQRES 25 A 424 GLU GLY LYS ASP VAL HIS ILE LYS GLU ASP GLU ARG TYR SEQRES 26 A 424 ALA LEU ASP VAL VAL LEU ALA SER ARG GLY TYR PRO GLU SEQRES 27 A 424 LYS PRO GLU THR GLY LYS ILE ILE HIS GLY LEU ASP TYR SEQRES 28 A 424 LEU LYS SER MET GLU ASP VAL VAL VAL PHE HIS ALA GLY SEQRES 29 A 424 THR LYS LYS GLU GLY ASN PHE THR VAL THR SER GLY GLY SEQRES 30 A 424 ARG VAL LEU ASN VAL CYS ALA TYR GLY LYS THR LEU LYS SEQRES 31 A 424 GLU ALA LYS GLU ARG ALA TYR GLU ALA ILE ARG TYR VAL SEQRES 32 A 424 CYS PHE GLU GLY MET HIS TYR ARG LYS ASP ILE GLY ASP SEQRES 33 A 424 LYS ALA PHE LYS TYR LEU SER GLU SEQRES 1 B 424 MET LYS VAL LEU VAL VAL GLY ASN GLY GLY ARG GLU HIS SEQRES 2 B 424 ALA ILE ALA TRP LYS VAL ALA GLN SER PRO LEU VAL LYS SEQRES 3 B 424 GLU LEU TYR VAL ALA LYS GLY ASN ALA GLY ILE TRP GLU SEQRES 4 B 424 ILE ALA LYS ARG VAL ASP ILE SER PRO THR ASP VAL GLU SEQRES 5 B 424 LYS LEU ALA GLU PHE ALA LYS ASN GLU GLY VAL ASP PHE SEQRES 6 B 424 THR ILE VAL GLY PRO GLU ALA PRO LEU VAL GLU GLY ILE SEQRES 7 B 424 VAL ASP GLU PHE GLU LYS ARG GLY LEU LYS ILE PHE GLY SEQRES 8 B 424 PRO ASN LYS GLU ALA ALA LYS LEU GLU GLY SER LYS ALA SEQRES 9 B 424 PHE ALA LYS THR PHE MET LYS LYS TYR GLY ILE PRO THR SEQRES 10 B 424 ALA ARG TYR GLU VAL PHE THR ASP PHE GLU LYS ALA LYS SEQRES 11 B 424 GLU TYR VAL GLU LYS VAL GLY ALA PRO ILE VAL VAL LYS SEQRES 12 B 424 ALA ASP GLY LEU ALA ALA GLY LYS GLY ALA VAL VAL CYS SEQRES 13 B 424 GLU THR VAL GLU LYS ALA ILE GLU THR LEU ASP ARG PHE SEQRES 14 B 424 LEU ASN LYS LYS ILE PHE GLY LYS SER SER GLU ARG VAL SEQRES 15 B 424 VAL ILE GLU GLU PHE LEU GLU GLY GLU GLU ALA SER TYR SEQRES 16 B 424 ILE VAL MET ILE ASN GLY ASP ARG TYR VAL PRO LEU PRO SEQRES 17 B 424 THR SER GLN ASP HIS LYS ARG LEU LEU ASP GLU ASP LYS SEQRES 18 B 424 GLY PRO ASN THR GLY GLY MET GLY ALA TYR SER PRO THR SEQRES 19 B 424 PRO VAL ILE ASN GLU GLU VAL GLU LYS ARG ILE ARG GLU SEQRES 20 B 424 GLU ILE VAL GLU ARG VAL ILE LYS GLY LEU LYS GLU GLU SEQRES 21 B 424 GLY ILE TYR TYR ARG GLY PHE LEU TYR ALA GLY LEU MET SEQRES 22 B 424 ILE THR LYS GLU GLY PRO LYS VAL LEU GLU PHE ASN VAL SEQRES 23 B 424 ARG LEU GLY ASP PRO GLU ALA GLN PRO ILE LEU MET ARG SEQRES 24 B 424 VAL LYS ASN ASP PHE LEU GLU THR LEU LEU ASN PHE TYR SEQRES 25 B 424 GLU GLY LYS ASP VAL HIS ILE LYS GLU ASP GLU ARG TYR SEQRES 26 B 424 ALA LEU ASP VAL VAL LEU ALA SER ARG GLY TYR PRO GLU SEQRES 27 B 424 LYS PRO GLU THR GLY LYS ILE ILE HIS GLY LEU ASP TYR SEQRES 28 B 424 LEU LYS SER MET GLU ASP VAL VAL VAL PHE HIS ALA GLY SEQRES 29 B 424 THR LYS LYS GLU GLY ASN PHE THR VAL THR SER GLY GLY SEQRES 30 B 424 ARG VAL LEU ASN VAL CYS ALA TYR GLY LYS THR LEU LYS SEQRES 31 B 424 GLU ALA LYS GLU ARG ALA TYR GLU ALA ILE ARG TYR VAL SEQRES 32 B 424 CYS PHE GLU GLY MET HIS TYR ARG LYS ASP ILE GLY ASP SEQRES 33 B 424 LYS ALA PHE LYS TYR LEU SER GLU HET PO4 A 645 5 HET ATP A 646 31 HET PO4 B 646 5 HET ATP B 647 31 HETNAM PO4 PHOSPHATE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 ATP 2(C10 H16 N5 O13 P3) FORMUL 7 HOH *311(H2 O) HELIX 1 1 GLY A 9 ALA A 20 1 12 HELIX 2 2 GLY A 36 ILE A 40 5 5 HELIX 3 3 ASP A 50 GLY A 62 1 13 HELIX 4 4 PRO A 70 GLU A 76 1 7 HELIX 5 5 GLY A 77 ARG A 85 1 9 HELIX 6 6 ALA A 97 SER A 102 1 6 HELIX 7 7 SER A 102 TYR A 113 1 12 HELIX 8 8 ASP A 125 GLY A 137 1 13 HELIX 9 9 THR A 158 ASN A 171 1 14 HELIX 10 10 PHE A 175 GLU A 180 5 6 HELIX 11 11 ASN A 238 ILE A 249 1 12 HELIX 12 12 ILE A 249 GLY A 261 1 13 HELIX 13 13 GLU A 292 ARG A 299 1 8 HELIX 14 14 ASP A 303 GLU A 313 1 11 HELIX 15 15 GLY A 348 SER A 354 1 7 HELIX 16 16 THR A 388 ARG A 401 1 14 HELIX 17 17 ALA A 418 LEU A 422 5 5 HELIX 18 18 GLY B 9 ALA B 20 1 12 HELIX 19 19 GLY B 36 ILE B 40 5 5 HELIX 20 20 ASP B 50 GLY B 62 1 13 HELIX 21 21 PRO B 70 GLU B 76 1 7 HELIX 22 22 GLY B 77 ARG B 85 1 9 HELIX 23 23 ALA B 97 SER B 102 1 6 HELIX 24 24 SER B 102 TYR B 113 1 12 HELIX 25 25 ASP B 125 GLY B 137 1 13 HELIX 26 26 THR B 158 ASN B 171 1 14 HELIX 27 27 PHE B 175 GLU B 180 5 6 HELIX 28 28 ASP B 218 ASP B 220 5 3 HELIX 29 29 ASN B 238 ILE B 249 1 12 HELIX 30 30 ILE B 249 GLY B 261 1 13 HELIX 31 31 GLU B 292 ARG B 299 1 8 HELIX 32 32 ASP B 303 GLU B 313 1 11 HELIX 33 33 GLY B 348 MET B 355 1 8 HELIX 34 34 THR B 388 ARG B 401 1 14 HELIX 35 35 ALA B 418 LEU B 422 5 5 SHEET 1 A 5 LYS A 42 VAL A 44 0 SHEET 2 A 5 GLU A 27 LYS A 32 1 N LEU A 28 O LYS A 42 SHEET 3 A 5 LYS A 2 GLY A 7 1 N VAL A 3 O TYR A 29 SHEET 4 A 5 PHE A 65 VAL A 68 1 O ILE A 67 N LEU A 4 SHEET 5 A 5 ILE A 89 PHE A 90 1 O PHE A 90 N THR A 66 SHEET 1 B 4 TYR A 120 PHE A 123 0 SHEET 2 B 4 VAL A 182 GLU A 186 -1 O VAL A 182 N PHE A 123 SHEET 3 B 4 ILE A 140 ALA A 144 -1 N LYS A 143 O VAL A 183 SHEET 4 B 4 ALA A 153 CYS A 156 -1 O VAL A 154 N VAL A 142 SHEET 1 C 4 ARG A 203 PRO A 206 0 SHEET 2 C 4 GLU A 191 ASN A 200 -1 N ASN A 200 O ARG A 203 SHEET 3 C 4 ARG A 265 THR A 275 -1 O ILE A 274 N GLU A 191 SHEET 4 C 4 GLY A 278 ASN A 285 -1 O LEU A 282 N GLY A 271 SHEET 1 D 5 GLN A 211 ASP A 212 0 SHEET 2 D 5 GLY A 229 SER A 232 -1 O TYR A 231 N GLN A 211 SHEET 3 D 5 TYR A 325 ALA A 332 -1 O ASP A 328 N ALA A 230 SHEET 4 D 5 ARG A 378 GLY A 386 -1 O GLY A 386 N TYR A 325 SHEET 5 D 5 VAL A 358 HIS A 362 -1 N VAL A 359 O CYS A 383 SHEET 1 E 2 ARG A 215 LEU A 217 0 SHEET 2 E 2 LYS A 221 ASN A 224 -1 O LYS A 221 N LEU A 217 SHEET 1 F 2 THR A 365 GLU A 368 0 SHEET 2 F 2 PHE A 371 THR A 374 -1 O VAL A 373 N LYS A 366 SHEET 1 G 5 LYS B 42 VAL B 44 0 SHEET 2 G 5 GLU B 27 LYS B 32 1 N LEU B 28 O LYS B 42 SHEET 3 G 5 LYS B 2 GLY B 7 1 N VAL B 3 O TYR B 29 SHEET 4 G 5 PHE B 65 VAL B 68 1 O ILE B 67 N LEU B 4 SHEET 5 G 5 ILE B 89 PHE B 90 1 O PHE B 90 N THR B 66 SHEET 1 H 4 TYR B 120 PHE B 123 0 SHEET 2 H 4 VAL B 182 GLU B 186 -1 O VAL B 182 N PHE B 123 SHEET 3 H 4 ILE B 140 ALA B 144 -1 N LYS B 143 O VAL B 183 SHEET 4 H 4 ALA B 153 CYS B 156 -1 O VAL B 154 N VAL B 142 SHEET 1 I 4 ARG B 203 PRO B 206 0 SHEET 2 I 4 GLU B 191 ASN B 200 -1 N MET B 198 O VAL B 205 SHEET 3 I 4 ARG B 265 THR B 275 -1 O ILE B 274 N GLU B 191 SHEET 4 I 4 GLY B 278 ASN B 285 -1 O ASN B 285 N TYR B 269 SHEET 1 J 5 GLN B 211 ASP B 212 0 SHEET 2 J 5 GLY B 229 SER B 232 -1 O TYR B 231 N GLN B 211 SHEET 3 J 5 TYR B 325 ALA B 332 -1 O ASP B 328 N ALA B 230 SHEET 4 J 5 ARG B 378 GLY B 386 -1 O LEU B 380 N LEU B 331 SHEET 5 J 5 VAL B 358 HIS B 362 -1 N VAL B 359 O CYS B 383 SHEET 1 K 2 ARG B 215 LEU B 217 0 SHEET 2 K 2 LYS B 221 ASN B 224 -1 O LYS B 221 N LEU B 217 SHEET 1 L 2 THR B 365 GLU B 368 0 SHEET 2 L 2 PHE B 371 THR B 374 -1 O VAL B 373 N LYS B 366 SSBOND 1 CYS A 404 CYS B 404 1555 1544 2.78 CISPEP 1 ALA A 31 LYS A 32 0 6.89 CISPEP 2 ALA A 138 PRO A 139 0 0.18 CISPEP 3 SER A 232 PRO A 233 0 -0.41 CISPEP 4 ASP A 290 PRO A 291 0 0.59 CISPEP 5 TYR A 336 PRO A 337 0 0.52 CISPEP 6 ALA B 31 LYS B 32 0 -1.47 CISPEP 7 ALA B 138 PRO B 139 0 0.11 CISPEP 8 SER B 232 PRO B 233 0 -0.24 CISPEP 9 ASP B 290 PRO B 291 0 0.87 CISPEP 10 TYR B 336 PRO B 337 0 0.40 SITE 1 AC1 7 ARG A 11 GLU A 71 ARG A 287 ASP A 290 SITE 2 AC1 7 ARG A 378 HOH A 666 HOH A 754 SITE 1 AC2 10 ARG B 11 GLU B 71 ARG B 287 ASP B 290 SITE 2 AC2 10 ARG B 378 HOH B 670 HOH B 746 HOH B 760 SITE 3 AC2 10 HOH B 809 HOH B 811 SITE 1 AC3 19 LYS A 103 VAL A 141 LYS A 143 ALA A 148 SITE 2 AC3 19 GLY A 150 LYS A 151 GLY A 152 ALA A 153 SITE 3 AC3 19 GLU A 185 GLU A 186 PHE A 187 LEU A 188 SITE 4 AC3 19 GLU A 192 LYS A 214 ASN A 224 GLU A 283 SITE 5 AC3 19 HOH A 676 HOH A 702 HOH A 720 SITE 1 AC4 20 LYS B 103 LYS B 143 GLY B 150 LYS B 151 SITE 2 AC4 20 GLY B 152 ALA B 153 GLU B 185 GLU B 186 SITE 3 AC4 20 PHE B 187 LEU B 188 GLU B 192 LYS B 214 SITE 4 AC4 20 ASN B 224 HOH B 679 HOH B 699 HOH B 700 SITE 5 AC4 20 HOH B 743 HOH B 773 HOH B 777 HOH B 792 CRYST1 45.797 61.623 89.963 97.65 102.98 106.65 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021835 0.006530 0.006563 0.00000 SCALE2 0.000000 0.016938 0.003666 0.00000 SCALE3 0.000000 0.000000 0.011671 0.00000