HEADER PROTEIN TRANSPORT 27-APR-07 2YXQ TITLE THE PLUG DOMAIN OF THE SECY PROTEIN STABLIZES THE CLOSED STATE OF THE TITLE 2 TRANSLOCATION CHANNEL AND MAINTAINS A MEMBRANE SEAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECY; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT HOMOLOG; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PREPROTEIN TRANSLOCASE SECG SUBUNIT; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA HOMOLOG; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: SECY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 12 ORGANISM_TAXID: 2190; SOURCE 13 GENE: SECE; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 21 ORGANISM_TAXID: 2190; SOURCE 22 GENE: SECG; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS PROTEIN TRANSLOCATION, SIGNAL PEPTIDE, MEMBRANE PROTEIN, PROTEIN KEYWDS 2 SECRETION, PRL MUTATION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,S.SCHULMAN REVDAT 4 25-OCT-23 2YXQ 1 SEQADV REVDAT 3 13-JUL-11 2YXQ 1 VERSN REVDAT 2 24-FEB-09 2YXQ 1 VERSN REVDAT 1 14-AUG-07 2YXQ 0 JRNL AUTH W.LI,S.SCHULMAN,D.BOYD,K.ERLANDSON,J.BECKWITH,T.A.RAPOPORT JRNL TITL THE PLUG DOMAIN OF THE SECY PROTEIN STABILIZES THE CLOSED JRNL TITL 2 STATE OF THE TRANSLOCATION CHANNEL AND MAINTAINS A MEMBRANE JRNL TITL 3 SEAL JRNL REF MOL.CELL V. 26 511 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17531803 JRNL DOI 10.1016/J.MOLCEL.2007.05.002 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 70.6 REMARK 3 NUMBER OF REFLECTIONS : 10303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : FROM 1RHZ REMARK 3 R VALUE (WORKING SET) : 0.301 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 538 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4045 REMARK 3 BIN FREE R VALUE : 0.4219 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 26 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 118.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : -0.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.57200 REMARK 3 B22 (A**2) : 9.89500 REMARK 3 B33 (A**2) : -8.32300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14678 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : 0.78700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: 1RHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40-55% PEG400, 50MM GLYCINE-HCL , PH9, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.11750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.24450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.11750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.24450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 434 REMARK 465 ASN A 435 REMARK 465 LYS A 436 REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 PRO B 67 REMARK 465 PRO B 68 REMARK 465 THR B 69 REMARK 465 THR B 70 REMARK 465 PRO B 71 REMARK 465 ARG B 72 REMARK 465 VAL B 73 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 ARG C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 6 REMARK 465 THR C 7 REMARK 465 GLY C 8 REMARK 465 LEU C 9 REMARK 465 ALA C 10 REMARK 465 THR C 11 REMARK 465 SER C 12 REMARK 465 ALA C 13 REMARK 465 GLY C 14 REMARK 465 LEU C 15 REMARK 465 ILE C 16 REMARK 465 ARG C 17 REMARK 465 TYR C 18 REMARK 465 MET C 19 REMARK 465 ASP C 20 REMARK 465 LEU C 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 342 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 4 34.24 -66.68 REMARK 500 PRO A 6 -71.75 -57.94 REMARK 500 PRO A 12 160.72 -48.88 REMARK 500 TYR A 37 -71.60 -66.31 REMARK 500 THR A 47 114.33 -165.35 REMARK 500 ALA A 50 42.90 -70.69 REMARK 500 PRO A 53 134.55 -12.24 REMARK 500 ARG A 66 -151.59 48.06 REMARK 500 ILE A 67 95.91 73.81 REMARK 500 LEU A 88 -71.72 -69.00 REMARK 500 VAL A 89 0.25 -55.81 REMARK 500 ILE A 93 -35.02 -32.54 REMARK 500 ILE A 94 57.42 -140.89 REMARK 500 GLN A 95 129.87 -36.45 REMARK 500 SER A 99 -65.59 -2.12 REMARK 500 PRO A 101 -17.66 -49.50 REMARK 500 GLU A 102 -78.75 -65.30 REMARK 500 GLN A 108 -82.87 -69.87 REMARK 500 LEU A 135 45.18 -86.31 REMARK 500 THR A 136 101.44 -58.93 REMARK 500 PRO A 137 -35.91 -31.61 REMARK 500 VAL A 143 -72.49 -51.51 REMARK 500 ILE A 144 -49.64 -28.50 REMARK 500 ILE A 145 -82.60 -47.95 REMARK 500 ILE A 147 -73.12 -43.34 REMARK 500 LYS A 163 13.32 -142.17 REMARK 500 TYR A 164 -4.43 -147.62 REMARK 500 ILE A 170 -76.30 -33.08 REMARK 500 LEU A 172 -74.26 -58.67 REMARK 500 THR A 181 -36.14 -39.62 REMARK 500 PRO A 189 -87.67 -55.52 REMARK 500 GLU A 190 30.77 -67.59 REMARK 500 PRO A 205 103.17 -23.26 REMARK 500 ALA A 211 -72.34 -47.03 REMARK 500 ARG A 239 -29.81 84.41 REMARK 500 ILE A 240 -149.01 -61.00 REMARK 500 VAL A 244 -115.95 -134.02 REMARK 500 LYS A 246 16.57 -167.05 REMARK 500 TYR A 247 120.06 -13.49 REMARK 500 SER A 255 38.66 -92.52 REMARK 500 ASN A 256 -85.15 -71.64 REMARK 500 ILE A 257 -35.72 -37.30 REMARK 500 LEU A 276 45.22 -80.35 REMARK 500 TYR A 277 -63.85 -133.73 REMARK 500 ARG A 278 31.19 -84.01 REMARK 500 MET A 279 33.82 -160.68 REMARK 500 PRO A 282 61.53 -67.32 REMARK 500 TYR A 287 -90.94 -79.77 REMARK 500 GLU A 288 111.85 68.66 REMARK 500 TYR A 304 -170.19 -62.24 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 66 12.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RHZ RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 900 RELATED ID: 1RH5 RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 999 REMARK 999 SEQUENCE REMARK 999 DELETION OF 60-65 AND SUBSTITUTION WITH ONE GLY DBREF 2YXQ A 1 436 UNP Q60175 SECY_METJA 1 436 DBREF 2YXQ B 0 73 UNP Q57817 SECE_METJA 1 74 DBREF 2YXQ C 1 53 UNP P60460 SECG_METJA 1 53 SEQADV 2YXQ A UNP Q60175 GLN 60 DELETION SEQADV 2YXQ A UNP Q60175 THR 61 DELETION SEQADV 2YXQ A UNP Q60175 ILE 62 DELETION SEQADV 2YXQ A UNP Q60175 THR 63 DELETION SEQADV 2YXQ A UNP Q60175 ALA 64 DELETION SEQADV 2YXQ GLY A 65 UNP Q60175 SER 65 SEE REMARK 999 SEQRES 1 A 431 MET LYS LYS LEU ILE PRO ILE LEU GLU LYS ILE PRO GLU SEQRES 2 A 431 VAL GLU LEU PRO VAL LYS GLU ILE THR PHE LYS GLU LYS SEQRES 3 A 431 LEU LYS TRP THR GLY ILE VAL LEU VAL LEU TYR PHE ILE SEQRES 4 A 431 MET GLY CYS ILE ASP VAL TYR THR ALA GLY ALA GLN ILE SEQRES 5 A 431 PRO ALA ILE PHE GLU PHE TRP GLY ARG ILE GLY THR LEU SEQRES 6 A 431 ILE THR LEU GLY ILE GLY PRO ILE VAL THR ALA GLY ILE SEQRES 7 A 431 ILE MET GLN LEU LEU VAL GLY SER GLY ILE ILE GLN MET SEQRES 8 A 431 ASP LEU SER ILE PRO GLU ASN ARG ALA LEU PHE GLN GLY SEQRES 9 A 431 CYS GLN LYS LEU LEU SER ILE ILE MET CYS PHE VAL GLU SEQRES 10 A 431 ALA VAL LEU PHE VAL GLY ALA GLY ALA PHE GLY ILE LEU SEQRES 11 A 431 THR PRO LEU LEU ALA PHE LEU VAL ILE ILE GLN ILE ALA SEQRES 12 A 431 PHE GLY SER ILE ILE LEU ILE TYR LEU ASP GLU ILE VAL SEQRES 13 A 431 SER LYS TYR GLY ILE GLY SER GLY ILE GLY LEU PHE ILE SEQRES 14 A 431 ALA ALA GLY VAL SER GLN THR ILE PHE VAL GLY ALA LEU SEQRES 15 A 431 GLY PRO GLU GLY TYR LEU TRP LYS PHE LEU ASN SER LEU SEQRES 16 A 431 ILE GLN GLY VAL PRO ASN ILE GLU TYR ILE ALA PRO ILE SEQRES 17 A 431 ILE GLY THR ILE ILE VAL PHE LEU MET VAL VAL TYR ALA SEQRES 18 A 431 GLU CYS MET ARG VAL GLU ILE PRO LEU ALA HIS GLY ARG SEQRES 19 A 431 ILE LYS GLY ALA VAL GLY LYS TYR PRO ILE LYS PHE VAL SEQRES 20 A 431 TYR VAL SER ASN ILE PRO VAL ILE LEU ALA ALA ALA LEU SEQRES 21 A 431 PHE ALA ASN ILE GLN LEU TRP GLY LEU ALA LEU TYR ARG SEQRES 22 A 431 MET GLY ILE PRO ILE LEU GLY HIS TYR GLU GLY GLY ARG SEQRES 23 A 431 ALA VAL ASP GLY ILE ALA TYR TYR LEU SER THR PRO TYR SEQRES 24 A 431 GLY LEU SER SER VAL ILE SER ASP PRO ILE HIS ALA ILE SEQRES 25 A 431 VAL TYR MET ILE ALA MET ILE ILE THR CYS VAL MET PHE SEQRES 26 A 431 GLY ILE PHE TRP VAL GLU THR THR GLY LEU ASP PRO LYS SEQRES 27 A 431 SER MET ALA LYS ARG ILE GLY SER LEU GLY MET ALA ILE SEQRES 28 A 431 LYS GLY PHE ARG LYS SER GLU LYS ALA ILE GLU HIS ARG SEQRES 29 A 431 LEU LYS ARG TYR ILE PRO PRO LEU THR VAL MET SER SER SEQRES 30 A 431 ALA PHE VAL GLY PHE LEU ALA THR ILE ALA ASN PHE ILE SEQRES 31 A 431 GLY ALA LEU GLY GLY GLY THR GLY VAL LEU LEU THR VAL SEQRES 32 A 431 SER ILE VAL TYR ARG MET TYR GLU GLN LEU LEU ARG GLU SEQRES 33 A 431 LYS VAL SER GLU LEU HIS PRO ALA ILE ALA LYS LEU LEU SEQRES 34 A 431 ASN LYS SEQRES 1 B 74 MET LYS THR ASP PHE ASN GLN LYS ILE GLU GLN LEU LYS SEQRES 2 B 74 GLU PHE ILE GLU GLU CYS ARG ARG VAL TRP LEU VAL LEU SEQRES 3 B 74 LYS LYS PRO THR LYS ASP GLU TYR LEU ALA VAL ALA LYS SEQRES 4 B 74 VAL THR ALA LEU GLY ILE SER LEU LEU GLY ILE ILE GLY SEQRES 5 B 74 TYR ILE ILE HIS VAL PRO ALA THR TYR ILE LYS GLY ILE SEQRES 6 B 74 LEU LYS PRO PRO THR THR PRO ARG VAL SEQRES 1 C 53 MET SER LYS ARG GLU GLU THR GLY LEU ALA THR SER ALA SEQRES 2 C 53 GLY LEU ILE ARG TYR MET ASP GLU THR PHE SER LYS ILE SEQRES 3 C 53 ARG VAL LYS PRO GLU HIS VAL ILE GLY VAL THR VAL ALA SEQRES 4 C 53 PHE VAL ILE ILE GLU ALA ILE LEU THR TYR GLY ARG PHE SEQRES 5 C 53 LEU HELIX 1 1 LEU A 4 ILE A 11 1 8 HELIX 2 2 THR A 22 ILE A 43 1 22 HELIX 3 3 PRO A 53 PHE A 58 1 6 HELIX 4 4 ILE A 75 VAL A 89 1 15 HELIX 5 5 ILE A 100 ALA A 129 1 30 HELIX 6 6 THR A 136 GLY A 165 1 30 HELIX 7 7 SER A 168 GLY A 188 1 21 HELIX 8 8 GLY A 191 GLY A 203 1 13 HELIX 9 9 ASN A 206 MET A 229 1 24 HELIX 10 10 VAL A 252 VAL A 254 5 3 HELIX 11 11 SER A 255 LEU A 276 1 22 HELIX 12 12 ASP A 294 LEU A 300 1 7 HELIX 13 13 ASP A 312 GLU A 336 1 25 HELIX 14 14 ASP A 341 LEU A 352 1 12 HELIX 15 15 SER A 362 GLY A 396 1 35 HELIX 16 16 GLY A 400 GLU A 425 1 26 HELIX 17 17 THR B 2 TRP B 22 1 21 HELIX 18 18 THR B 29 LEU B 65 1 37 HELIX 19 19 PRO C 30 THR C 48 1 19 SHEET 1 A 2 VAL A 231 GLU A 232 0 SHEET 2 A 2 PRO A 248 ILE A 249 -1 O ILE A 249 N VAL A 231 CRYST1 92.235 148.489 81.072 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012335 0.00000