HEADER LIGASE 05-MAY-07 2YZG TITLE CRYSTAL STRUCTURE OF D-ALA:D-ALA LIGASE FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANINE LIGASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: D-ALA:D-ALA LIGASE; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS D-ALANINE:D-ALANINE LIGASE, CELL SHAPE, PEPTIDOGLYCAN SYNTHESIS, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KITAMURA,S.YOKOYAMA,S.KURAMITSU,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2YZG 1 VERSN REVDAT 2 24-FEB-09 2YZG 1 VERSN REVDAT 1 06-NOV-07 2YZG 0 JRNL AUTH Y.KITAMURA,S.YOKOYAMA,S.KURAMITSU JRNL TITL CRYSTAL STRUCTURE OF D-ALA:D-ALA LIGASE FROM THERMUS JRNL TITL 2 THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 99904.350 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 53311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5414 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7232 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 759 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7189 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.38000 REMARK 3 B22 (A**2) : 2.98000 REMARK 3 B33 (A**2) : -4.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.03 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 33.48 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB027328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979029, 0.900000, 0.97924 REMARK 200 MONOCHROMATOR : A FIXED EXIT SI DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR FOLLOWED BY A TWO REMARK 200 DIMENSIONAL FOCUSING MIRROR WHICH REMARK 200 IS COATED IN RHODIUM. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54945 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG4000, 0.1M NA CHLORIDE, 0.1M REMARK 280 MES, PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.61200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.20600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.61200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.20600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2745 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2742 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR B 223 REMARK 465 ASP B 224 REMARK 465 TYR B 225 REMARK 465 GLU B 226 REMARK 465 THR B 227 REMARK 465 LYS B 228 REMARK 465 TYR B 229 REMARK 465 THR B 230 REMARK 465 PHE C 222 REMARK 465 TYR C 223 REMARK 465 ASP C 224 REMARK 465 TYR C 225 REMARK 465 GLU C 226 REMARK 465 THR C 227 REMARK 465 LYS C 228 REMARK 465 TYR C 229 REMARK 465 THR C 230 REMARK 465 PRO C 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 29 44.36 -87.62 REMARK 500 LYS A 56 -5.03 59.06 REMARK 500 THR A 157 172.07 -51.88 REMARK 500 SER A 159 127.34 -18.63 REMARK 500 VAL A 206 -54.52 65.84 REMARK 500 LYS A 228 -144.06 47.34 REMARK 500 PRO A 244 -27.87 -39.74 REMARK 500 ALA A 267 147.11 176.43 REMARK 500 TYR A 295 -72.13 -40.67 REMARK 500 HIS B 27 -15.89 -161.34 REMARK 500 PRO B 29 32.46 -78.03 REMARK 500 ALA B 57 139.98 179.95 REMARK 500 ASP B 117 -62.30 -91.29 REMARK 500 THR B 157 65.65 -107.00 REMARK 500 SER B 159 -148.05 -148.60 REMARK 500 PHE B 180 -6.61 -59.52 REMARK 500 SER B 193 131.72 -179.78 REMARK 500 VAL B 206 -59.24 66.67 REMARK 500 PRO B 244 1.50 -60.52 REMARK 500 ALA B 267 143.75 -174.97 REMARK 500 GLU B 275 57.61 36.86 REMARK 500 PRO B 291 -8.82 -54.47 REMARK 500 ALA C 7 -169.17 -129.21 REMARK 500 HIS C 27 -28.05 -160.13 REMARK 500 GLN C 39 -16.21 -48.89 REMARK 500 LYS C 56 13.47 83.33 REMARK 500 ALA C 57 151.56 172.73 REMARK 500 GLU C 62 31.98 -153.64 REMARK 500 SER C 159 -168.23 -173.34 REMARK 500 VAL C 206 -53.43 67.16 REMARK 500 PRO C 287 -178.61 -69.61 REMARK 500 TYR C 295 -71.31 -50.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 295 0.08 SIDE CHAIN REMARK 500 TYR B 295 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG B 264 25.0 L L OUTSIDE RANGE REMARK 500 ARG C 264 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003001114.1 RELATED DB: TARGETDB DBREF 2YZG A 1 319 UNP Q5SHZ3 Q5SHZ3_THET8 1 319 DBREF 2YZG B 1 319 UNP Q5SHZ3 Q5SHZ3_THET8 1 319 DBREF 2YZG C 1 319 UNP Q5SHZ3 Q5SHZ3_THET8 1 319 SEQRES 1 A 319 MSE ARG VAL LEU LEU ILE ALA GLY GLY VAL SER PRO GLU SEQRES 2 A 319 HIS GLU VAL SER LEU LEU SER ALA GLU GLY VAL LEU ARG SEQRES 3 A 319 HIS ILE PRO PHE PRO THR ASP LEU ALA VAL ILE ALA GLN SEQRES 4 A 319 ASP GLY ARG TRP LEU LEU GLY GLU LYS ALA LEU THR ALA SEQRES 5 A 319 LEU GLU ALA LYS ALA ALA PRO GLU GLY GLU HIS PRO PHE SEQRES 6 A 319 PRO PRO PRO LEU SER TRP GLU ARG TYR ASP VAL VAL PHE SEQRES 7 A 319 PRO LEU LEU HIS GLY ARG PHE GLY GLU ASP GLY THR VAL SEQRES 8 A 319 GLN GLY PHE LEU GLU LEU LEU GLY LYS PRO TYR VAL GLY SEQRES 9 A 319 ALA GLY VAL ALA ALA SER ALA LEU CYS MSE ASP LYS ASP SEQRES 10 A 319 LEU SER LYS ARG VAL LEU ALA GLN ALA GLY VAL PRO VAL SEQRES 11 A 319 VAL PRO TRP VAL ALA VAL ARG LYS GLY GLU PRO PRO VAL SEQRES 12 A 319 VAL PRO PHE ASP PRO PRO PHE PHE VAL LYS PRO ALA ASN SEQRES 13 A 319 THR GLY SER SER VAL GLY ILE SER ARG VAL GLU ARG PHE SEQRES 14 A 319 GLN ASP LEU GLU ALA ALA LEU ALA LEU ALA PHE ARG TYR SEQRES 15 A 319 ASP GLU LYS ALA VAL VAL GLU LYS ALA LEU SER PRO VAL SEQRES 16 A 319 ARG GLU LEU GLU VAL GLY VAL LEU GLY ASN VAL PHE GLY SEQRES 17 A 319 GLU ALA SER PRO VAL GLY GLU VAL ARG TYR GLU ALA PRO SEQRES 18 A 319 PHE TYR ASP TYR GLU THR LYS TYR THR PRO GLY ARG ALA SEQRES 19 A 319 GLU LEU LEU ILE PRO ALA PRO LEU ASP PRO GLY THR GLN SEQRES 20 A 319 GLU THR VAL GLN GLU LEU ALA LEU LYS ALA TYR LYS VAL SEQRES 21 A 319 LEU GLY VAL ARG GLY MSE ALA ARG VAL ASP PHE PHE LEU SEQRES 22 A 319 ALA GLU GLY GLU LEU TYR LEU ASN GLU LEU ASN THR ILE SEQRES 23 A 319 PRO GLY PHE THR PRO THR SER MSE TYR PRO ARG LEU PHE SEQRES 24 A 319 GLU ALA GLY GLY VAL ALA TYR PRO GLU LEU LEU ARG ARG SEQRES 25 A 319 LEU VAL GLU LEU ALA LEU THR SEQRES 1 B 319 MSE ARG VAL LEU LEU ILE ALA GLY GLY VAL SER PRO GLU SEQRES 2 B 319 HIS GLU VAL SER LEU LEU SER ALA GLU GLY VAL LEU ARG SEQRES 3 B 319 HIS ILE PRO PHE PRO THR ASP LEU ALA VAL ILE ALA GLN SEQRES 4 B 319 ASP GLY ARG TRP LEU LEU GLY GLU LYS ALA LEU THR ALA SEQRES 5 B 319 LEU GLU ALA LYS ALA ALA PRO GLU GLY GLU HIS PRO PHE SEQRES 6 B 319 PRO PRO PRO LEU SER TRP GLU ARG TYR ASP VAL VAL PHE SEQRES 7 B 319 PRO LEU LEU HIS GLY ARG PHE GLY GLU ASP GLY THR VAL SEQRES 8 B 319 GLN GLY PHE LEU GLU LEU LEU GLY LYS PRO TYR VAL GLY SEQRES 9 B 319 ALA GLY VAL ALA ALA SER ALA LEU CYS MSE ASP LYS ASP SEQRES 10 B 319 LEU SER LYS ARG VAL LEU ALA GLN ALA GLY VAL PRO VAL SEQRES 11 B 319 VAL PRO TRP VAL ALA VAL ARG LYS GLY GLU PRO PRO VAL SEQRES 12 B 319 VAL PRO PHE ASP PRO PRO PHE PHE VAL LYS PRO ALA ASN SEQRES 13 B 319 THR GLY SER SER VAL GLY ILE SER ARG VAL GLU ARG PHE SEQRES 14 B 319 GLN ASP LEU GLU ALA ALA LEU ALA LEU ALA PHE ARG TYR SEQRES 15 B 319 ASP GLU LYS ALA VAL VAL GLU LYS ALA LEU SER PRO VAL SEQRES 16 B 319 ARG GLU LEU GLU VAL GLY VAL LEU GLY ASN VAL PHE GLY SEQRES 17 B 319 GLU ALA SER PRO VAL GLY GLU VAL ARG TYR GLU ALA PRO SEQRES 18 B 319 PHE TYR ASP TYR GLU THR LYS TYR THR PRO GLY ARG ALA SEQRES 19 B 319 GLU LEU LEU ILE PRO ALA PRO LEU ASP PRO GLY THR GLN SEQRES 20 B 319 GLU THR VAL GLN GLU LEU ALA LEU LYS ALA TYR LYS VAL SEQRES 21 B 319 LEU GLY VAL ARG GLY MSE ALA ARG VAL ASP PHE PHE LEU SEQRES 22 B 319 ALA GLU GLY GLU LEU TYR LEU ASN GLU LEU ASN THR ILE SEQRES 23 B 319 PRO GLY PHE THR PRO THR SER MSE TYR PRO ARG LEU PHE SEQRES 24 B 319 GLU ALA GLY GLY VAL ALA TYR PRO GLU LEU LEU ARG ARG SEQRES 25 B 319 LEU VAL GLU LEU ALA LEU THR SEQRES 1 C 319 MSE ARG VAL LEU LEU ILE ALA GLY GLY VAL SER PRO GLU SEQRES 2 C 319 HIS GLU VAL SER LEU LEU SER ALA GLU GLY VAL LEU ARG SEQRES 3 C 319 HIS ILE PRO PHE PRO THR ASP LEU ALA VAL ILE ALA GLN SEQRES 4 C 319 ASP GLY ARG TRP LEU LEU GLY GLU LYS ALA LEU THR ALA SEQRES 5 C 319 LEU GLU ALA LYS ALA ALA PRO GLU GLY GLU HIS PRO PHE SEQRES 6 C 319 PRO PRO PRO LEU SER TRP GLU ARG TYR ASP VAL VAL PHE SEQRES 7 C 319 PRO LEU LEU HIS GLY ARG PHE GLY GLU ASP GLY THR VAL SEQRES 8 C 319 GLN GLY PHE LEU GLU LEU LEU GLY LYS PRO TYR VAL GLY SEQRES 9 C 319 ALA GLY VAL ALA ALA SER ALA LEU CYS MSE ASP LYS ASP SEQRES 10 C 319 LEU SER LYS ARG VAL LEU ALA GLN ALA GLY VAL PRO VAL SEQRES 11 C 319 VAL PRO TRP VAL ALA VAL ARG LYS GLY GLU PRO PRO VAL SEQRES 12 C 319 VAL PRO PHE ASP PRO PRO PHE PHE VAL LYS PRO ALA ASN SEQRES 13 C 319 THR GLY SER SER VAL GLY ILE SER ARG VAL GLU ARG PHE SEQRES 14 C 319 GLN ASP LEU GLU ALA ALA LEU ALA LEU ALA PHE ARG TYR SEQRES 15 C 319 ASP GLU LYS ALA VAL VAL GLU LYS ALA LEU SER PRO VAL SEQRES 16 C 319 ARG GLU LEU GLU VAL GLY VAL LEU GLY ASN VAL PHE GLY SEQRES 17 C 319 GLU ALA SER PRO VAL GLY GLU VAL ARG TYR GLU ALA PRO SEQRES 18 C 319 PHE TYR ASP TYR GLU THR LYS TYR THR PRO GLY ARG ALA SEQRES 19 C 319 GLU LEU LEU ILE PRO ALA PRO LEU ASP PRO GLY THR GLN SEQRES 20 C 319 GLU THR VAL GLN GLU LEU ALA LEU LYS ALA TYR LYS VAL SEQRES 21 C 319 LEU GLY VAL ARG GLY MSE ALA ARG VAL ASP PHE PHE LEU SEQRES 22 C 319 ALA GLU GLY GLU LEU TYR LEU ASN GLU LEU ASN THR ILE SEQRES 23 C 319 PRO GLY PHE THR PRO THR SER MSE TYR PRO ARG LEU PHE SEQRES 24 C 319 GLU ALA GLY GLY VAL ALA TYR PRO GLU LEU LEU ARG ARG SEQRES 25 C 319 LEU VAL GLU LEU ALA LEU THR MODRES 2YZG MSE A 1 MET SELENOMETHIONINE MODRES 2YZG MSE A 114 MET SELENOMETHIONINE MODRES 2YZG MSE A 266 MET SELENOMETHIONINE MODRES 2YZG MSE A 294 MET SELENOMETHIONINE MODRES 2YZG MSE B 1 MET SELENOMETHIONINE MODRES 2YZG MSE B 114 MET SELENOMETHIONINE MODRES 2YZG MSE B 266 MET SELENOMETHIONINE MODRES 2YZG MSE B 294 MET SELENOMETHIONINE MODRES 2YZG MSE C 1 MET SELENOMETHIONINE MODRES 2YZG MSE C 114 MET SELENOMETHIONINE MODRES 2YZG MSE C 266 MET SELENOMETHIONINE MODRES 2YZG MSE C 294 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 114 8 HET MSE A 266 8 HET MSE A 294 8 HET MSE B 1 8 HET MSE B 114 8 HET MSE B 266 8 HET MSE B 294 8 HET MSE C 1 8 HET MSE C 114 8 HET MSE C 266 8 HET MSE C 294 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 4 HOH *204(H2 O) HELIX 1 1 GLU A 13 ILE A 28 1 16 HELIX 2 2 LEU A 45 ALA A 55 1 11 HELIX 3 3 SER A 70 TYR A 74 5 5 HELIX 4 4 GLY A 89 LEU A 98 1 10 HELIX 5 5 GLY A 106 MSE A 114 1 9 HELIX 6 6 ASP A 115 ALA A 126 1 12 HELIX 7 7 ARG A 168 PHE A 180 1 13 HELIX 8 8 ASP A 243 LEU A 261 1 19 HELIX 9 9 SER A 293 GLY A 302 1 10 HELIX 10 10 ALA A 305 LEU A 318 1 14 HELIX 11 11 GLU B 13 ARG B 26 1 14 HELIX 12 12 LEU B 45 LYS B 56 1 12 HELIX 13 13 SER B 70 TYR B 74 5 5 HELIX 14 14 GLY B 89 GLY B 99 1 11 HELIX 15 15 GLY B 106 MSE B 114 1 9 HELIX 16 16 ASP B 117 ALA B 126 1 10 HELIX 17 17 ARG B 168 GLN B 170 5 3 HELIX 18 18 ASP B 171 PHE B 180 1 10 HELIX 19 19 GLY B 245 GLY B 262 1 18 HELIX 20 20 SER B 293 GLY B 302 1 10 HELIX 21 21 ALA B 305 ALA B 317 1 13 HELIX 22 22 GLU C 13 ARG C 26 1 14 HELIX 23 23 LEU C 45 ALA C 55 1 11 HELIX 24 24 SER C 70 TYR C 74 5 5 HELIX 25 25 GLY C 89 GLY C 99 1 11 HELIX 26 26 GLY C 106 ASP C 115 1 10 HELIX 27 27 ASP C 117 GLY C 127 1 11 HELIX 28 28 ARG C 168 GLN C 170 5 3 HELIX 29 29 ASP C 171 PHE C 180 1 10 HELIX 30 30 ASP C 243 GLY C 262 1 20 HELIX 31 31 SER C 293 GLY C 302 1 10 HELIX 32 32 ALA C 305 THR C 319 1 15 SHEET 1 A 4 TRP A 43 LEU A 44 0 SHEET 2 A 4 THR A 32 ILE A 37 -1 N VAL A 36 O LEU A 44 SHEET 3 A 4 VAL A 3 GLY A 8 1 N LEU A 5 O ASP A 33 SHEET 4 A 4 VAL A 76 PRO A 79 1 O PHE A 78 N LEU A 4 SHEET 1 B 4 TRP A 133 ARG A 137 0 SHEET 2 B 4 LYS A 185 LYS A 190 -1 O ALA A 186 N VAL A 136 SHEET 3 B 4 PHE A 150 PRO A 154 -1 N PHE A 151 O GLU A 189 SHEET 4 B 4 SER A 164 VAL A 166 -1 O SER A 164 N VAL A 152 SHEET 1 C 5 ARG A 233 LEU A 237 0 SHEET 2 C 5 GLU A 209 GLU A 219 -1 N GLU A 215 O LEU A 237 SHEET 3 C 5 ARG A 196 LEU A 203 -1 N GLU A 199 O GLY A 214 SHEET 4 C 5 MSE A 266 ALA A 274 -1 O PHE A 271 N LEU A 198 SHEET 5 C 5 GLU A 277 ASN A 284 -1 O ASN A 284 N ARG A 268 SHEET 1 D 2 PHE A 222 ASP A 224 0 SHEET 2 D 2 LYS A 228 THR A 230 -1 O THR A 230 N PHE A 222 SHEET 1 E 4 TRP B 43 LEU B 44 0 SHEET 2 E 4 THR B 32 ILE B 37 -1 N VAL B 36 O LEU B 44 SHEET 3 E 4 VAL B 3 GLY B 8 1 N ALA B 7 O ILE B 37 SHEET 4 E 4 VAL B 76 PRO B 79 1 O PHE B 78 N LEU B 4 SHEET 1 F 4 TRP B 133 ARG B 137 0 SHEET 2 F 4 LYS B 185 LYS B 190 -1 O ALA B 186 N VAL B 136 SHEET 3 F 4 PHE B 150 PRO B 154 -1 N PHE B 151 O GLU B 189 SHEET 4 F 4 SER B 164 VAL B 166 -1 O SER B 164 N VAL B 152 SHEET 1 G 5 ALA B 234 LEU B 237 0 SHEET 2 G 5 GLU B 209 TYR B 218 -1 N ARG B 217 O GLU B 235 SHEET 3 G 5 ARG B 196 LEU B 203 -1 N GLU B 199 O GLY B 214 SHEET 4 G 5 MSE B 266 ALA B 274 -1 O PHE B 271 N LEU B 198 SHEET 5 G 5 GLU B 277 ASN B 284 -1 O GLU B 282 N ASP B 270 SHEET 1 H 4 TRP C 43 LEU C 44 0 SHEET 2 H 4 THR C 32 ILE C 37 -1 N VAL C 36 O LEU C 44 SHEET 3 H 4 VAL C 3 GLY C 8 1 N LEU C 5 O ASP C 33 SHEET 4 H 4 VAL C 76 PRO C 79 1 O PHE C 78 N LEU C 4 SHEET 1 I 4 TRP C 133 ARG C 137 0 SHEET 2 I 4 LYS C 185 LYS C 190 -1 O ALA C 186 N VAL C 136 SHEET 3 I 4 PHE C 150 PRO C 154 -1 N LYS C 153 O VAL C 187 SHEET 4 I 4 SER C 164 VAL C 166 -1 O VAL C 166 N PHE C 150 SHEET 1 J 5 ALA C 234 LEU C 237 0 SHEET 2 J 5 GLU C 209 TYR C 218 -1 N ARG C 217 O GLU C 235 SHEET 3 J 5 ARG C 196 LEU C 203 -1 N GLU C 199 O GLY C 214 SHEET 4 J 5 MSE C 266 ALA C 274 -1 O PHE C 271 N LEU C 198 SHEET 5 J 5 GLU C 277 ASN C 284 -1 O GLU C 282 N ASP C 270 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C CYS A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N ASP A 115 1555 1555 1.33 LINK C GLY A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N ALA A 267 1555 1555 1.34 LINK C SER A 293 N MSE A 294 1555 1555 1.33 LINK C MSE A 294 N TYR A 295 1555 1555 1.31 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C CYS B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N ASP B 115 1555 1555 1.34 LINK C GLY B 265 N MSE B 266 1555 1555 1.33 LINK C MSE B 266 N ALA B 267 1555 1555 1.33 LINK C SER B 293 N MSE B 294 1555 1555 1.33 LINK C MSE B 294 N TYR B 295 1555 1555 1.32 LINK C MSE C 1 N ARG C 2 1555 1555 1.33 LINK C CYS C 113 N MSE C 114 1555 1555 1.33 LINK C MSE C 114 N ASP C 115 1555 1555 1.33 LINK C GLY C 265 N MSE C 266 1555 1555 1.33 LINK C MSE C 266 N ALA C 267 1555 1555 1.32 LINK C SER C 293 N MSE C 294 1555 1555 1.33 LINK C MSE C 294 N TYR C 295 1555 1555 1.31 CISPEP 1 PHE A 65 PRO A 66 0 0.04 CISPEP 2 PRO A 148 PRO A 149 0 -0.17 CISPEP 3 SER A 193 PRO A 194 0 -0.03 CISPEP 4 ILE A 238 PRO A 239 0 -0.52 CISPEP 5 PHE B 65 PRO B 66 0 -0.12 CISPEP 6 PRO B 148 PRO B 149 0 0.01 CISPEP 7 SER B 193 PRO B 194 0 -0.12 CISPEP 8 ILE B 238 PRO B 239 0 -0.07 CISPEP 9 PHE C 65 PRO C 66 0 0.01 CISPEP 10 PRO C 148 PRO C 149 0 0.03 CISPEP 11 SER C 193 PRO C 194 0 0.02 CISPEP 12 ILE C 238 PRO C 239 0 -0.05 CRYST1 165.224 56.412 142.213 90.00 109.08 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006052 0.000000 0.002093 0.00000 SCALE2 0.000000 0.017727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007440 0.00000 HETATM 1 N MSE A 1 8.544 38.116 35.034 1.00 48.69 N HETATM 2 CA MSE A 1 9.023 37.064 35.979 1.00 47.21 C HETATM 3 C MSE A 1 8.024 35.939 36.215 1.00 45.07 C HETATM 4 O MSE A 1 6.882 36.176 36.610 1.00 44.43 O HETATM 5 CB MSE A 1 9.366 37.679 37.337 1.00 50.01 C HETATM 6 CG MSE A 1 10.843 37.911 37.591 1.00 52.89 C HETATM 7 SE MSE A 1 11.873 36.269 37.727 1.00 53.11 SE HETATM 8 CE MSE A 1 13.179 36.720 36.414 1.00 51.88 C