data_2YZI # _entry.id 2YZI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YZI RCSB RCSB027330 WWPDB D_1000027330 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id pho001000107.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YZI _pdbx_database_status.recvd_initial_deposition_date 2007-05-06 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kanagawa, M.' 1 'Kuramitsu, S.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kanagawa, M.' 1 primary 'Kuramitsu, S.' 2 primary 'Yokoyama, S.' 3 # _cell.entry_id 2YZI _cell.length_a 48.495 _cell.length_b 55.499 _cell.length_c 97.533 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YZI _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein PH0107' 15856.578 2 ? ? ? ? 2 water nat water 18.015 137 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;RV(MSE)D(MSE)KAPIKVY(MSE)TKKLLGVKPSTSVQEASRL(MSE)(MSE)EFDVGSLVVINDDGNVVGFFTKSDII RRVIVPGLPYDIPVERI(MSE)TRNLITANVNTPLGEVLRK(MSE)AEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLE TAISAE ; _entity_poly.pdbx_seq_one_letter_code_can ;RVMDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR NLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETAISAE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier pho001000107.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 VAL n 1 3 MSE n 1 4 ASP n 1 5 MSE n 1 6 LYS n 1 7 ALA n 1 8 PRO n 1 9 ILE n 1 10 LYS n 1 11 VAL n 1 12 TYR n 1 13 MSE n 1 14 THR n 1 15 LYS n 1 16 LYS n 1 17 LEU n 1 18 LEU n 1 19 GLY n 1 20 VAL n 1 21 LYS n 1 22 PRO n 1 23 SER n 1 24 THR n 1 25 SER n 1 26 VAL n 1 27 GLN n 1 28 GLU n 1 29 ALA n 1 30 SER n 1 31 ARG n 1 32 LEU n 1 33 MSE n 1 34 MSE n 1 35 GLU n 1 36 PHE n 1 37 ASP n 1 38 VAL n 1 39 GLY n 1 40 SER n 1 41 LEU n 1 42 VAL n 1 43 VAL n 1 44 ILE n 1 45 ASN n 1 46 ASP n 1 47 ASP n 1 48 GLY n 1 49 ASN n 1 50 VAL n 1 51 VAL n 1 52 GLY n 1 53 PHE n 1 54 PHE n 1 55 THR n 1 56 LYS n 1 57 SER n 1 58 ASP n 1 59 ILE n 1 60 ILE n 1 61 ARG n 1 62 ARG n 1 63 VAL n 1 64 ILE n 1 65 VAL n 1 66 PRO n 1 67 GLY n 1 68 LEU n 1 69 PRO n 1 70 TYR n 1 71 ASP n 1 72 ILE n 1 73 PRO n 1 74 VAL n 1 75 GLU n 1 76 ARG n 1 77 ILE n 1 78 MSE n 1 79 THR n 1 80 ARG n 1 81 ASN n 1 82 LEU n 1 83 ILE n 1 84 THR n 1 85 ALA n 1 86 ASN n 1 87 VAL n 1 88 ASN n 1 89 THR n 1 90 PRO n 1 91 LEU n 1 92 GLY n 1 93 GLU n 1 94 VAL n 1 95 LEU n 1 96 ARG n 1 97 LYS n 1 98 MSE n 1 99 ALA n 1 100 GLU n 1 101 HIS n 1 102 ARG n 1 103 ILE n 1 104 LYS n 1 105 HIS n 1 106 ILE n 1 107 LEU n 1 108 ILE n 1 109 GLU n 1 110 GLU n 1 111 GLU n 1 112 GLY n 1 113 LYS n 1 114 ILE n 1 115 VAL n 1 116 GLY n 1 117 ILE n 1 118 PHE n 1 119 THR n 1 120 LEU n 1 121 SER n 1 122 ASP n 1 123 LEU n 1 124 LEU n 1 125 GLU n 1 126 ALA n 1 127 SER n 1 128 ARG n 1 129 ARG n 1 130 ARG n 1 131 LEU n 1 132 GLU n 1 133 THR n 1 134 ALA n 1 135 ILE n 1 136 SER n 1 137 ALA n 1 138 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus horikoshii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 53953 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O57847_PYRHO _struct_ref.pdbx_db_accession O57847 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RVMDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR NLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETAISAE ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YZI A 1 ? 138 ? O57847 2 ? 139 ? 2 139 2 1 2YZI B 1 ? 138 ? O57847 2 ? 139 ? 2 139 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YZI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_percent_sol 40.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '0.2M Sodium Chloride, 0.1M Bis-Tris pH 5.5, 25% PEG 3350 , VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2006-10-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Fixed exit Si double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9792 1.0 2 0.9797 1.0 3 0.9000 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9792, 0.9797, 0.9000' # _reflns.entry_id 2YZI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.25 _reflns.number_obs 24075 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.018 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 18.9 _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 97.8 _reflns_shell.Rmerge_I_obs 0.321 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2366 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2YZI _refine.ls_number_reflns_obs 12464 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 74736.19 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.20 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 94.6 _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.228 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1282 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 28.7 _refine.aniso_B[1][1] -8.97 _refine.aniso_B[2][2] 7.02 _refine.aniso_B[3][3] 1.95 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.382861 _refine.solvent_model_param_bsol 45.6376 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2YZI _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.33 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free 0.36 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2104 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 137 _refine_hist.number_atoms_total 2241 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 34.20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.90 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.25 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.01 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.05 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.06 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.25 _refine_ls_shell.d_res_low 2.39 _refine_ls_shell.number_reflns_R_work 1663 _refine_ls_shell.R_factor_R_work 0.313 _refine_ls_shell.percent_reflns_obs 87.2 _refine_ls_shell.R_factor_R_free 0.335 _refine_ls_shell.R_factor_R_free_error 0.024 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 191 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2YZI _struct.title 'Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii' _struct.pdbx_descriptor 'Hypothetical protein PH0107' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YZI _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;sheet/helix/sheet/sheet/helix, Hypothetical protein, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 8 ? TYR A 12 ? PRO A 9 TYR A 13 5 ? 5 HELX_P HELX_P2 2 SER A 25 ? ASP A 37 ? SER A 26 ASP A 38 1 ? 13 HELX_P HELX_P3 3 LYS A 56 ? VAL A 63 ? LYS A 57 VAL A 64 1 ? 8 HELX_P HELX_P4 4 PRO A 73 ? ILE A 77 ? PRO A 74 ILE A 78 5 ? 5 HELX_P HELX_P5 5 PRO A 90 ? ARG A 102 ? PRO A 91 ARG A 103 1 ? 13 HELX_P HELX_P6 6 LEU A 120 ? ARG A 129 ? LEU A 121 ARG A 130 1 ? 10 HELX_P HELX_P7 7 PRO B 8 ? TYR B 12 ? PRO B 9 TYR B 13 5 ? 5 HELX_P HELX_P8 8 SER B 25 ? PHE B 36 ? SER B 26 PHE B 37 1 ? 12 HELX_P HELX_P9 9 LYS B 56 ? VAL B 63 ? LYS B 57 VAL B 64 1 ? 8 HELX_P HELX_P10 10 PRO B 73 ? ILE B 77 ? PRO B 74 ILE B 78 5 ? 5 HELX_P HELX_P11 11 PRO B 90 ? ARG B 102 ? PRO B 91 ARG B 103 1 ? 13 HELX_P HELX_P12 12 LEU B 120 ? ARG B 128 ? LEU B 121 ARG B 129 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 3 C ? ? ? 1_555 A ASP 4 N ? ? A MSE 4 A ASP 5 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A ASP 4 C ? ? ? 1_555 A MSE 5 N ? ? A ASP 5 A MSE 6 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A MSE 5 C ? ? ? 1_555 A LYS 6 N ? ? A MSE 6 A LYS 7 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A TYR 12 C ? ? ? 1_555 A MSE 13 N ? ? A TYR 13 A MSE 14 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A MSE 13 C ? ? ? 1_555 A THR 14 N ? ? A MSE 14 A THR 15 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A LEU 32 C ? ? ? 1_555 A MSE 33 N ? ? A LEU 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? A MSE 33 C ? ? ? 1_555 A MSE 34 N ? ? A MSE 34 A MSE 35 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? A MSE 34 C ? ? ? 1_555 A GLU 35 N ? ? A MSE 35 A GLU 36 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? A ILE 77 C ? ? ? 1_555 A MSE 78 N ? ? A ILE 78 A MSE 79 1_555 ? ? ? ? ? ? ? 1.324 ? covale10 covale ? ? A MSE 78 C ? ? ? 1_555 A THR 79 N ? ? A MSE 79 A THR 80 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale ? ? A LYS 97 C ? ? ? 1_555 A MSE 98 N ? ? A LYS 98 A MSE 99 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale ? ? A MSE 98 C ? ? ? 1_555 A ALA 99 N ? ? A MSE 99 A ALA 100 1_555 ? ? ? ? ? ? ? 1.328 ? covale13 covale ? ? B MSE 3 C ? ? ? 1_555 B ASP 4 N ? ? B MSE 4 B ASP 5 1_555 ? ? ? ? ? ? ? 1.328 ? covale14 covale ? ? B ASP 4 C ? ? ? 1_555 B MSE 5 N ? ? B ASP 5 B MSE 6 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? B MSE 5 C ? ? ? 1_555 B LYS 6 N ? ? B MSE 6 B LYS 7 1_555 ? ? ? ? ? ? ? 1.329 ? covale16 covale ? ? B TYR 12 C ? ? ? 1_555 B MSE 13 N ? ? B TYR 13 B MSE 14 1_555 ? ? ? ? ? ? ? 1.329 ? covale17 covale ? ? B MSE 13 C ? ? ? 1_555 B THR 14 N ? ? B MSE 14 B THR 15 1_555 ? ? ? ? ? ? ? 1.327 ? covale18 covale ? ? B LEU 32 C ? ? ? 1_555 B MSE 33 N ? ? B LEU 33 B MSE 34 1_555 ? ? ? ? ? ? ? 1.333 ? covale19 covale ? ? B MSE 33 C ? ? ? 1_555 B MSE 34 N ? ? B MSE 34 B MSE 35 1_555 ? ? ? ? ? ? ? 1.326 ? covale20 covale ? ? B MSE 34 C ? ? ? 1_555 B GLU 35 N ? ? B MSE 35 B GLU 36 1_555 ? ? ? ? ? ? ? 1.331 ? covale21 covale ? ? B ILE 77 C ? ? ? 1_555 B MSE 78 N ? ? B ILE 78 B MSE 79 1_555 ? ? ? ? ? ? ? 1.328 ? covale22 covale ? ? B MSE 78 C ? ? ? 1_555 B THR 79 N ? ? B MSE 79 B THR 80 1_555 ? ? ? ? ? ? ? 1.332 ? covale23 covale ? ? B LYS 97 C ? ? ? 1_555 B MSE 98 N ? ? B LYS 98 B MSE 99 1_555 ? ? ? ? ? ? ? 1.327 ? covale24 covale ? ? B MSE 98 C ? ? ? 1_555 B ALA 99 N ? ? B MSE 99 B ALA 100 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 3 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 19 ? VAL A 20 ? GLY A 20 VAL A 21 A 2 SER A 40 ? ILE A 44 ? SER A 41 ILE A 45 A 3 VAL A 50 ? THR A 55 ? VAL A 51 THR A 56 B 1 THR A 84 ? ASN A 86 ? THR A 85 ASN A 87 B 2 HIS A 105 ? GLU A 110 ? HIS A 106 GLU A 111 B 3 LYS A 113 ? THR A 119 ? LYS A 114 THR A 120 C 1 GLY B 19 ? VAL B 20 ? GLY B 20 VAL B 21 C 2 SER B 40 ? ILE B 44 ? SER B 41 ILE B 45 C 3 VAL B 50 ? THR B 55 ? VAL B 51 THR B 56 D 1 THR B 84 ? ASN B 86 ? THR B 85 ASN B 87 D 2 HIS B 105 ? GLU B 110 ? HIS B 106 GLU B 111 D 3 LYS B 113 ? THR B 119 ? LYS B 114 THR B 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 20 ? N VAL A 21 O ILE A 44 ? O ILE A 45 A 2 3 N VAL A 43 ? N VAL A 44 O VAL A 51 ? O VAL A 52 B 1 2 N ALA A 85 ? N ALA A 86 O GLU A 109 ? O GLU A 110 B 2 3 N ILE A 108 ? N ILE A 109 O GLY A 116 ? O GLY A 117 C 1 2 N VAL B 20 ? N VAL B 21 O ILE B 44 ? O ILE B 45 C 2 3 N VAL B 43 ? N VAL B 44 O VAL B 51 ? O VAL B 52 D 1 2 N ALA B 85 ? N ALA B 86 O GLU B 109 ? O GLU B 110 D 2 3 N ILE B 108 ? N ILE B 109 O GLY B 116 ? O GLY B 117 # _database_PDB_matrix.entry_id 2YZI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YZI _atom_sites.fract_transf_matrix[1][1] 0.020621 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018018 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010253 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 2 ? ? ? A . n A 1 2 VAL 2 3 ? ? ? A . n A 1 3 MSE 3 4 4 MSE MSE A . n A 1 4 ASP 4 5 5 ASP ASP A . n A 1 5 MSE 5 6 6 MSE MSE A . n A 1 6 LYS 6 7 7 LYS LYS A . n A 1 7 ALA 7 8 8 ALA ALA A . n A 1 8 PRO 8 9 9 PRO PRO A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 LYS 10 11 11 LYS LYS A . n A 1 11 VAL 11 12 12 VAL VAL A . n A 1 12 TYR 12 13 13 TYR TYR A . n A 1 13 MSE 13 14 14 MSE MSE A . n A 1 14 THR 14 15 15 THR THR A . n A 1 15 LYS 15 16 16 LYS LYS A . n A 1 16 LYS 16 17 17 LYS LYS A . n A 1 17 LEU 17 18 18 LEU LEU A . n A 1 18 LEU 18 19 19 LEU LEU A . n A 1 19 GLY 19 20 20 GLY GLY A . n A 1 20 VAL 20 21 21 VAL VAL A . n A 1 21 LYS 21 22 22 LYS LYS A . n A 1 22 PRO 22 23 23 PRO PRO A . n A 1 23 SER 23 24 24 SER SER A . n A 1 24 THR 24 25 25 THR THR A . n A 1 25 SER 25 26 26 SER SER A . n A 1 26 VAL 26 27 27 VAL VAL A . n A 1 27 GLN 27 28 28 GLN GLN A . n A 1 28 GLU 28 29 29 GLU GLU A . n A 1 29 ALA 29 30 30 ALA ALA A . n A 1 30 SER 30 31 31 SER SER A . n A 1 31 ARG 31 32 32 ARG ARG A . n A 1 32 LEU 32 33 33 LEU LEU A . n A 1 33 MSE 33 34 34 MSE MSE A . n A 1 34 MSE 34 35 35 MSE MSE A . n A 1 35 GLU 35 36 36 GLU GLU A . n A 1 36 PHE 36 37 37 PHE PHE A . n A 1 37 ASP 37 38 38 ASP ASP A . n A 1 38 VAL 38 39 39 VAL VAL A . n A 1 39 GLY 39 40 40 GLY GLY A . n A 1 40 SER 40 41 41 SER SER A . n A 1 41 LEU 41 42 42 LEU LEU A . n A 1 42 VAL 42 43 43 VAL VAL A . n A 1 43 VAL 43 44 44 VAL VAL A . n A 1 44 ILE 44 45 45 ILE ILE A . n A 1 45 ASN 45 46 46 ASN ASN A . n A 1 46 ASP 46 47 47 ASP ASP A . n A 1 47 ASP 47 48 48 ASP ASP A . n A 1 48 GLY 48 49 49 GLY GLY A . n A 1 49 ASN 49 50 50 ASN ASN A . n A 1 50 VAL 50 51 51 VAL VAL A . n A 1 51 VAL 51 52 52 VAL VAL A . n A 1 52 GLY 52 53 53 GLY GLY A . n A 1 53 PHE 53 54 54 PHE PHE A . n A 1 54 PHE 54 55 55 PHE PHE A . n A 1 55 THR 55 56 56 THR THR A . n A 1 56 LYS 56 57 57 LYS LYS A . n A 1 57 SER 57 58 58 SER SER A . n A 1 58 ASP 58 59 59 ASP ASP A . n A 1 59 ILE 59 60 60 ILE ILE A . n A 1 60 ILE 60 61 61 ILE ILE A . n A 1 61 ARG 61 62 62 ARG ARG A . n A 1 62 ARG 62 63 63 ARG ARG A . n A 1 63 VAL 63 64 64 VAL VAL A . n A 1 64 ILE 64 65 65 ILE ILE A . n A 1 65 VAL 65 66 66 VAL VAL A . n A 1 66 PRO 66 67 67 PRO PRO A . n A 1 67 GLY 67 68 68 GLY GLY A . n A 1 68 LEU 68 69 69 LEU LEU A . n A 1 69 PRO 69 70 70 PRO PRO A . n A 1 70 TYR 70 71 71 TYR TYR A . n A 1 71 ASP 71 72 72 ASP ASP A . n A 1 72 ILE 72 73 73 ILE ILE A . n A 1 73 PRO 73 74 74 PRO PRO A . n A 1 74 VAL 74 75 75 VAL VAL A . n A 1 75 GLU 75 76 76 GLU GLU A . n A 1 76 ARG 76 77 77 ARG ARG A . n A 1 77 ILE 77 78 78 ILE ILE A . n A 1 78 MSE 78 79 79 MSE MSE A . n A 1 79 THR 79 80 80 THR THR A . n A 1 80 ARG 80 81 81 ARG ARG A . n A 1 81 ASN 81 82 82 ASN ASN A . n A 1 82 LEU 82 83 83 LEU LEU A . n A 1 83 ILE 83 84 84 ILE ILE A . n A 1 84 THR 84 85 85 THR THR A . n A 1 85 ALA 85 86 86 ALA ALA A . n A 1 86 ASN 86 87 87 ASN ASN A . n A 1 87 VAL 87 88 88 VAL VAL A . n A 1 88 ASN 88 89 89 ASN ASN A . n A 1 89 THR 89 90 90 THR THR A . n A 1 90 PRO 90 91 91 PRO PRO A . n A 1 91 LEU 91 92 92 LEU LEU A . n A 1 92 GLY 92 93 93 GLY GLY A . n A 1 93 GLU 93 94 94 GLU GLU A . n A 1 94 VAL 94 95 95 VAL VAL A . n A 1 95 LEU 95 96 96 LEU LEU A . n A 1 96 ARG 96 97 97 ARG ARG A . n A 1 97 LYS 97 98 98 LYS LYS A . n A 1 98 MSE 98 99 99 MSE MSE A . n A 1 99 ALA 99 100 100 ALA ALA A . n A 1 100 GLU 100 101 101 GLU GLU A . n A 1 101 HIS 101 102 102 HIS HIS A . n A 1 102 ARG 102 103 103 ARG ARG A . n A 1 103 ILE 103 104 104 ILE ILE A . n A 1 104 LYS 104 105 105 LYS LYS A . n A 1 105 HIS 105 106 106 HIS HIS A . n A 1 106 ILE 106 107 107 ILE ILE A . n A 1 107 LEU 107 108 108 LEU LEU A . n A 1 108 ILE 108 109 109 ILE ILE A . n A 1 109 GLU 109 110 110 GLU GLU A . n A 1 110 GLU 110 111 111 GLU GLU A . n A 1 111 GLU 111 112 112 GLU GLU A . n A 1 112 GLY 112 113 113 GLY GLY A . n A 1 113 LYS 113 114 114 LYS LYS A . n A 1 114 ILE 114 115 115 ILE ILE A . n A 1 115 VAL 115 116 116 VAL VAL A . n A 1 116 GLY 116 117 117 GLY GLY A . n A 1 117 ILE 117 118 118 ILE ILE A . n A 1 118 PHE 118 119 119 PHE PHE A . n A 1 119 THR 119 120 120 THR THR A . n A 1 120 LEU 120 121 121 LEU LEU A . n A 1 121 SER 121 122 122 SER SER A . n A 1 122 ASP 122 123 123 ASP ASP A . n A 1 123 LEU 123 124 124 LEU LEU A . n A 1 124 LEU 124 125 125 LEU LEU A . n A 1 125 GLU 125 126 126 GLU GLU A . n A 1 126 ALA 126 127 127 ALA ALA A . n A 1 127 SER 127 128 128 SER SER A . n A 1 128 ARG 128 129 129 ARG ARG A . n A 1 129 ARG 129 130 130 ARG ARG A . n A 1 130 ARG 130 131 131 ARG ARG A . n A 1 131 LEU 131 132 132 LEU LEU A . n A 1 132 GLU 132 133 133 GLU GLU A . n A 1 133 THR 133 134 134 THR THR A . n A 1 134 ALA 134 135 135 ALA ALA A . n A 1 135 ILE 135 136 ? ? ? A . n A 1 136 SER 136 137 ? ? ? A . n A 1 137 ALA 137 138 ? ? ? A . n A 1 138 GLU 138 139 ? ? ? A . n B 1 1 ARG 1 2 ? ? ? B . n B 1 2 VAL 2 3 ? ? ? B . n B 1 3 MSE 3 4 4 MSE MSE B . n B 1 4 ASP 4 5 5 ASP ASP B . n B 1 5 MSE 5 6 6 MSE MSE B . n B 1 6 LYS 6 7 7 LYS LYS B . n B 1 7 ALA 7 8 8 ALA ALA B . n B 1 8 PRO 8 9 9 PRO PRO B . n B 1 9 ILE 9 10 10 ILE ILE B . n B 1 10 LYS 10 11 11 LYS LYS B . n B 1 11 VAL 11 12 12 VAL VAL B . n B 1 12 TYR 12 13 13 TYR TYR B . n B 1 13 MSE 13 14 14 MSE MSE B . n B 1 14 THR 14 15 15 THR THR B . n B 1 15 LYS 15 16 16 LYS LYS B . n B 1 16 LYS 16 17 17 LYS LYS B . n B 1 17 LEU 17 18 18 LEU LEU B . n B 1 18 LEU 18 19 19 LEU LEU B . n B 1 19 GLY 19 20 20 GLY GLY B . n B 1 20 VAL 20 21 21 VAL VAL B . n B 1 21 LYS 21 22 22 LYS LYS B . n B 1 22 PRO 22 23 23 PRO PRO B . n B 1 23 SER 23 24 24 SER SER B . n B 1 24 THR 24 25 25 THR THR B . n B 1 25 SER 25 26 26 SER SER B . n B 1 26 VAL 26 27 27 VAL VAL B . n B 1 27 GLN 27 28 28 GLN GLN B . n B 1 28 GLU 28 29 29 GLU GLU B . n B 1 29 ALA 29 30 30 ALA ALA B . n B 1 30 SER 30 31 31 SER SER B . n B 1 31 ARG 31 32 32 ARG ARG B . n B 1 32 LEU 32 33 33 LEU LEU B . n B 1 33 MSE 33 34 34 MSE MSE B . n B 1 34 MSE 34 35 35 MSE MSE B . n B 1 35 GLU 35 36 36 GLU GLU B . n B 1 36 PHE 36 37 37 PHE PHE B . n B 1 37 ASP 37 38 38 ASP ASP B . n B 1 38 VAL 38 39 39 VAL VAL B . n B 1 39 GLY 39 40 40 GLY GLY B . n B 1 40 SER 40 41 41 SER SER B . n B 1 41 LEU 41 42 42 LEU LEU B . n B 1 42 VAL 42 43 43 VAL VAL B . n B 1 43 VAL 43 44 44 VAL VAL B . n B 1 44 ILE 44 45 45 ILE ILE B . n B 1 45 ASN 45 46 46 ASN ASN B . n B 1 46 ASP 46 47 47 ASP ASP B . n B 1 47 ASP 47 48 48 ASP ASP B . n B 1 48 GLY 48 49 49 GLY GLY B . n B 1 49 ASN 49 50 50 ASN ASN B . n B 1 50 VAL 50 51 51 VAL VAL B . n B 1 51 VAL 51 52 52 VAL VAL B . n B 1 52 GLY 52 53 53 GLY GLY B . n B 1 53 PHE 53 54 54 PHE PHE B . n B 1 54 PHE 54 55 55 PHE PHE B . n B 1 55 THR 55 56 56 THR THR B . n B 1 56 LYS 56 57 57 LYS LYS B . n B 1 57 SER 57 58 58 SER SER B . n B 1 58 ASP 58 59 59 ASP ASP B . n B 1 59 ILE 59 60 60 ILE ILE B . n B 1 60 ILE 60 61 61 ILE ILE B . n B 1 61 ARG 61 62 62 ARG ARG B . n B 1 62 ARG 62 63 63 ARG ARG B . n B 1 63 VAL 63 64 64 VAL VAL B . n B 1 64 ILE 64 65 65 ILE ILE B . n B 1 65 VAL 65 66 66 VAL VAL B . n B 1 66 PRO 66 67 67 PRO PRO B . n B 1 67 GLY 67 68 68 GLY GLY B . n B 1 68 LEU 68 69 69 LEU LEU B . n B 1 69 PRO 69 70 70 PRO PRO B . n B 1 70 TYR 70 71 71 TYR TYR B . n B 1 71 ASP 71 72 72 ASP ASP B . n B 1 72 ILE 72 73 73 ILE ILE B . n B 1 73 PRO 73 74 74 PRO PRO B . n B 1 74 VAL 74 75 75 VAL VAL B . n B 1 75 GLU 75 76 76 GLU GLU B . n B 1 76 ARG 76 77 77 ARG ARG B . n B 1 77 ILE 77 78 78 ILE ILE B . n B 1 78 MSE 78 79 79 MSE MSE B . n B 1 79 THR 79 80 80 THR THR B . n B 1 80 ARG 80 81 81 ARG ARG B . n B 1 81 ASN 81 82 82 ASN ASN B . n B 1 82 LEU 82 83 83 LEU LEU B . n B 1 83 ILE 83 84 84 ILE ILE B . n B 1 84 THR 84 85 85 THR THR B . n B 1 85 ALA 85 86 86 ALA ALA B . n B 1 86 ASN 86 87 87 ASN ASN B . n B 1 87 VAL 87 88 88 VAL VAL B . n B 1 88 ASN 88 89 89 ASN ASN B . n B 1 89 THR 89 90 90 THR THR B . n B 1 90 PRO 90 91 91 PRO PRO B . n B 1 91 LEU 91 92 92 LEU LEU B . n B 1 92 GLY 92 93 93 GLY GLY B . n B 1 93 GLU 93 94 94 GLU GLU B . n B 1 94 VAL 94 95 95 VAL VAL B . n B 1 95 LEU 95 96 96 LEU LEU B . n B 1 96 ARG 96 97 97 ARG ARG B . n B 1 97 LYS 97 98 98 LYS LYS B . n B 1 98 MSE 98 99 99 MSE MSE B . n B 1 99 ALA 99 100 100 ALA ALA B . n B 1 100 GLU 100 101 101 GLU GLU B . n B 1 101 HIS 101 102 102 HIS HIS B . n B 1 102 ARG 102 103 103 ARG ARG B . n B 1 103 ILE 103 104 104 ILE ILE B . n B 1 104 LYS 104 105 105 LYS LYS B . n B 1 105 HIS 105 106 106 HIS HIS B . n B 1 106 ILE 106 107 107 ILE ILE B . n B 1 107 LEU 107 108 108 LEU LEU B . n B 1 108 ILE 108 109 109 ILE ILE B . n B 1 109 GLU 109 110 110 GLU GLU B . n B 1 110 GLU 110 111 111 GLU GLU B . n B 1 111 GLU 111 112 112 GLU GLU B . n B 1 112 GLY 112 113 113 GLY GLY B . n B 1 113 LYS 113 114 114 LYS LYS B . n B 1 114 ILE 114 115 115 ILE ILE B . n B 1 115 VAL 115 116 116 VAL VAL B . n B 1 116 GLY 116 117 117 GLY GLY B . n B 1 117 ILE 117 118 118 ILE ILE B . n B 1 118 PHE 118 119 119 PHE PHE B . n B 1 119 THR 119 120 120 THR THR B . n B 1 120 LEU 120 121 121 LEU LEU B . n B 1 121 SER 121 122 122 SER SER B . n B 1 122 ASP 122 123 123 ASP ASP B . n B 1 123 LEU 123 124 124 LEU LEU B . n B 1 124 LEU 124 125 125 LEU LEU B . n B 1 125 GLU 125 126 126 GLU GLU B . n B 1 126 ALA 126 127 127 ALA ALA B . n B 1 127 SER 127 128 128 SER SER B . n B 1 128 ARG 128 129 129 ARG ARG B . n B 1 129 ARG 129 130 130 ARG ARG B . n B 1 130 ARG 130 131 131 ARG ARG B . n B 1 131 LEU 131 132 132 LEU LEU B . n B 1 132 GLU 132 133 133 GLU GLU B . n B 1 133 THR 133 134 134 THR THR B . n B 1 134 ALA 134 135 135 ALA ALA B . n B 1 135 ILE 135 136 136 ILE ILE B . n B 1 136 SER 136 137 137 SER SER B . n B 1 137 ALA 137 138 138 ALA ALA B . n B 1 138 GLU 138 139 139 GLU GLU B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 140 1 HOH TIP A . C 2 HOH 2 141 7 HOH TIP A . C 2 HOH 3 142 8 HOH TIP A . C 2 HOH 4 143 9 HOH TIP A . C 2 HOH 5 144 10 HOH TIP A . C 2 HOH 6 145 14 HOH TIP A . C 2 HOH 7 146 18 HOH TIP A . C 2 HOH 8 147 19 HOH TIP A . C 2 HOH 9 148 27 HOH TIP A . C 2 HOH 10 149 33 HOH TIP A . C 2 HOH 11 150 36 HOH TIP A . C 2 HOH 12 151 38 HOH TIP A . C 2 HOH 13 152 43 HOH TIP A . C 2 HOH 14 153 45 HOH TIP A . C 2 HOH 15 154 49 HOH TIP A . C 2 HOH 16 155 51 HOH TIP A . C 2 HOH 17 156 53 HOH TIP A . C 2 HOH 18 157 56 HOH TIP A . C 2 HOH 19 158 57 HOH TIP A . C 2 HOH 20 159 58 HOH TIP A . C 2 HOH 21 160 67 HOH TIP A . C 2 HOH 22 161 68 HOH TIP A . C 2 HOH 23 162 75 HOH TIP A . C 2 HOH 24 163 79 HOH TIP A . C 2 HOH 25 164 89 HOH TIP A . C 2 HOH 26 165 90 HOH TIP A . C 2 HOH 27 166 93 HOH TIP A . C 2 HOH 28 167 94 HOH TIP A . C 2 HOH 29 168 96 HOH TIP A . C 2 HOH 30 169 98 HOH TIP A . C 2 HOH 31 170 112 HOH TIP A . C 2 HOH 32 171 117 HOH TIP A . C 2 HOH 33 172 121 HOH TIP A . C 2 HOH 34 173 122 HOH TIP A . C 2 HOH 35 174 124 HOH TIP A . C 2 HOH 36 175 128 HOH TIP A . C 2 HOH 37 176 130 HOH TIP A . C 2 HOH 38 177 131 HOH TIP A . C 2 HOH 39 178 132 HOH TIP A . C 2 HOH 40 179 138 HOH TIP A . C 2 HOH 41 180 139 HOH TIP A . C 2 HOH 42 181 140 HOH TIP A . C 2 HOH 43 182 141 HOH TIP A . C 2 HOH 44 183 144 HOH TIP A . C 2 HOH 45 184 145 HOH TIP A . C 2 HOH 46 185 146 HOH TIP A . C 2 HOH 47 186 149 HOH TIP A . C 2 HOH 48 187 150 HOH TIP A . C 2 HOH 49 188 152 HOH TIP A . C 2 HOH 50 189 160 HOH TIP A . C 2 HOH 51 190 174 HOH TIP A . C 2 HOH 52 191 177 HOH HOH A . D 2 HOH 1 141 13 HOH TIP B . D 2 HOH 2 142 65 HOH TIP B . D 2 HOH 3 143 148 HOH TIP B . D 2 HOH 4 144 2 HOH TIP B . D 2 HOH 5 145 3 HOH TIP B . D 2 HOH 6 146 4 HOH TIP B . D 2 HOH 7 147 5 HOH TIP B . D 2 HOH 8 148 11 HOH TIP B . D 2 HOH 9 149 12 HOH TIP B . D 2 HOH 10 150 15 HOH TIP B . D 2 HOH 11 151 16 HOH TIP B . D 2 HOH 12 152 17 HOH TIP B . D 2 HOH 13 153 20 HOH TIP B . D 2 HOH 14 154 21 HOH TIP B . D 2 HOH 15 155 22 HOH TIP B . D 2 HOH 16 156 23 HOH TIP B . D 2 HOH 17 157 24 HOH TIP B . D 2 HOH 18 158 26 HOH TIP B . D 2 HOH 19 159 28 HOH TIP B . D 2 HOH 20 160 29 HOH TIP B . D 2 HOH 21 161 30 HOH TIP B . D 2 HOH 22 162 31 HOH TIP B . D 2 HOH 23 163 32 HOH TIP B . D 2 HOH 24 164 34 HOH TIP B . D 2 HOH 25 165 35 HOH TIP B . D 2 HOH 26 166 37 HOH TIP B . D 2 HOH 27 167 39 HOH TIP B . D 2 HOH 28 168 41 HOH TIP B . D 2 HOH 29 169 42 HOH TIP B . D 2 HOH 30 170 47 HOH TIP B . D 2 HOH 31 171 50 HOH TIP B . D 2 HOH 32 172 52 HOH TIP B . D 2 HOH 33 173 54 HOH TIP B . D 2 HOH 34 174 55 HOH TIP B . D 2 HOH 35 175 59 HOH TIP B . D 2 HOH 36 176 61 HOH TIP B . D 2 HOH 37 177 62 HOH TIP B . D 2 HOH 38 178 63 HOH TIP B . D 2 HOH 39 179 69 HOH TIP B . D 2 HOH 40 180 70 HOH TIP B . D 2 HOH 41 181 74 HOH TIP B . D 2 HOH 42 182 76 HOH TIP B . D 2 HOH 43 183 77 HOH TIP B . D 2 HOH 44 184 78 HOH TIP B . D 2 HOH 45 185 80 HOH TIP B . D 2 HOH 46 186 82 HOH TIP B . D 2 HOH 47 187 83 HOH TIP B . D 2 HOH 48 188 84 HOH TIP B . D 2 HOH 49 189 92 HOH TIP B . D 2 HOH 50 190 97 HOH TIP B . D 2 HOH 51 191 100 HOH TIP B . D 2 HOH 52 192 103 HOH TIP B . D 2 HOH 53 193 105 HOH TIP B . D 2 HOH 54 194 109 HOH TIP B . D 2 HOH 55 195 111 HOH TIP B . D 2 HOH 56 196 113 HOH TIP B . D 2 HOH 57 197 114 HOH TIP B . D 2 HOH 58 198 115 HOH TIP B . D 2 HOH 59 199 119 HOH TIP B . D 2 HOH 60 200 120 HOH TIP B . D 2 HOH 61 201 123 HOH TIP B . D 2 HOH 62 202 125 HOH TIP B . D 2 HOH 63 203 133 HOH TIP B . D 2 HOH 64 204 135 HOH TIP B . D 2 HOH 65 205 136 HOH TIP B . D 2 HOH 66 206 137 HOH TIP B . D 2 HOH 67 207 151 HOH TIP B . D 2 HOH 68 208 155 HOH TIP B . D 2 HOH 69 209 156 HOH TIP B . D 2 HOH 70 210 157 HOH TIP B . D 2 HOH 71 211 158 HOH TIP B . D 2 HOH 72 212 159 HOH TIP B . D 2 HOH 73 213 161 HOH TIP B . D 2 HOH 74 214 162 HOH TIP B . D 2 HOH 75 215 163 HOH TIP B . D 2 HOH 76 216 164 HOH TIP B . D 2 HOH 77 217 165 HOH TIP B . D 2 HOH 78 218 166 HOH TIP B . D 2 HOH 79 219 167 HOH TIP B . D 2 HOH 80 220 168 HOH TIP B . D 2 HOH 81 221 169 HOH TIP B . D 2 HOH 82 222 170 HOH TIP B . D 2 HOH 83 223 171 HOH TIP B . D 2 HOH 84 224 175 HOH TIP B . D 2 HOH 85 225 176 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE 4 ? MET SELENOMETHIONINE 2 A MSE 5 A MSE 6 ? MET SELENOMETHIONINE 3 A MSE 13 A MSE 14 ? MET SELENOMETHIONINE 4 A MSE 33 A MSE 34 ? MET SELENOMETHIONINE 5 A MSE 34 A MSE 35 ? MET SELENOMETHIONINE 6 A MSE 78 A MSE 79 ? MET SELENOMETHIONINE 7 A MSE 98 A MSE 99 ? MET SELENOMETHIONINE 8 B MSE 3 B MSE 4 ? MET SELENOMETHIONINE 9 B MSE 5 B MSE 6 ? MET SELENOMETHIONINE 10 B MSE 13 B MSE 14 ? MET SELENOMETHIONINE 11 B MSE 33 B MSE 34 ? MET SELENOMETHIONINE 12 B MSE 34 B MSE 35 ? MET SELENOMETHIONINE 13 B MSE 78 B MSE 79 ? MET SELENOMETHIONINE 14 B MSE 98 B MSE 99 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 2750 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-06 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 64 ? ? -126.45 -55.74 2 1 TYR A 71 ? ? -66.02 3.20 3 1 LYS B 17 ? ? -61.53 73.80 4 1 VAL B 64 ? ? -126.84 -66.96 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 2 ? A ARG 1 2 1 Y 1 A VAL 3 ? A VAL 2 3 1 Y 1 A ILE 136 ? A ILE 135 4 1 Y 1 A SER 137 ? A SER 136 5 1 Y 1 A ALA 138 ? A ALA 137 6 1 Y 1 A GLU 139 ? A GLU 138 7 1 Y 1 B ARG 2 ? B ARG 1 8 1 Y 1 B VAL 3 ? B VAL 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #