HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 06-MAY-07 2YZJ TITLE CRYSTAL STRUCTURE OF DCTP DEAMINASE FROM SULFOLOBUS TOKODAII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 167AA LONG HYPOTHETICAL DUTPASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII; SOURCE 3 ORGANISM_TAXID: 111955; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-HISTEV KEYWDS ALL BETA PROTEINS, HYPOTHETICAL PROTEIN, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 4 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.KANAGAWA,S.BABA,S.KURAMITSU,S.YOKOYAMA,G.KAWAI,G.SAMPEI,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 30-OCT-24 2YZJ 1 REMARK SEQADV LINK REVDAT 3 11-OCT-17 2YZJ 1 REMARK REVDAT 2 24-FEB-09 2YZJ 1 VERSN REVDAT 1 06-NOV-07 2YZJ 0 JRNL AUTH M.KANAGAWA,S.BABA,S.KURAMITSU,S.YOKOYAMA,G.KAWAI,G.SAMPEI JRNL TITL CRYSTAL STRUCTURE OF DCTP DEAMINASE FROM SULFOLOBUS TOKODAII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 131238.650 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 77.6 REMARK 3 NUMBER OF REFLECTIONS : 40026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.900 REMARK 3 FREE R VALUE TEST SET COUNT : 8081 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 4.62000 REMARK 3 B13 (A**2) : 4.61000 REMARK 3 B23 (A**2) : 4.51000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.940 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.520 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.390 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.210 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 50.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : LIGAND.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789, 0.9794, 0.9000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90293 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.23600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17M MAGNESIUM ACETATE, 0.085M SODIUM REMARK 280 CAVPDYLATE PH 6.5, 17% PEG 8000, 0.01M DUTP, 0.01M MAGNESIUM REMARK 280 CHLORIDE, 0.02M TRIS-HCL PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12790 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 MSE A 9 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 3 REMARK 465 LEU B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 LYS B 7 REMARK 465 LEU B 8 REMARK 465 MSE B 9 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MSE C 1 REMARK 465 LYS C 2 REMARK 465 GLY C 3 REMARK 465 LEU C 4 REMARK 465 THR C 5 REMARK 465 GLU C 6 REMARK 465 LYS C 7 REMARK 465 LEU C 8 REMARK 465 MSE C 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 112 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 -62.03 -127.82 REMARK 500 ARG A 33 -155.74 -97.76 REMARK 500 ASN A 35 43.16 -150.13 REMARK 500 CYS A 42 -147.77 -143.64 REMARK 500 LYS A 68 -83.76 -81.13 REMARK 500 ASN A 158 24.44 -154.74 REMARK 500 LYS B 22 -61.31 -122.24 REMARK 500 ARG B 33 -153.91 -98.51 REMARK 500 ASN B 35 43.42 -153.17 REMARK 500 CYS B 42 -148.24 -150.00 REMARK 500 LYS B 68 -82.69 -78.74 REMARK 500 ASN B 158 28.17 -157.46 REMARK 500 LYS C 22 -62.98 -123.64 REMARK 500 ARG C 33 -156.50 -93.00 REMARK 500 ASN C 35 42.13 -150.58 REMARK 500 CYS C 42 -148.67 -150.16 REMARK 500 LYS C 68 -81.27 -85.98 REMARK 500 ASN C 158 23.33 -159.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD A 6194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD B 6294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD C 6394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 6646 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STO001001632.1 RELATED DB: TARGETDB DBREF 2YZJ A 1 167 UNP Q970G0 Q970G0_SULTO 1 167 DBREF 2YZJ B 1 167 UNP Q970G0 Q970G0_SULTO 1 167 DBREF 2YZJ C 1 167 UNP Q970G0 Q970G0_SULTO 1 167 SEQADV 2YZJ GLY A -1 UNP Q970G0 EXPRESSION TAG SEQADV 2YZJ HIS A 0 UNP Q970G0 EXPRESSION TAG SEQADV 2YZJ GLY B -1 UNP Q970G0 EXPRESSION TAG SEQADV 2YZJ HIS B 0 UNP Q970G0 EXPRESSION TAG SEQADV 2YZJ GLY C -1 UNP Q970G0 EXPRESSION TAG SEQADV 2YZJ HIS C 0 UNP Q970G0 EXPRESSION TAG SEQRES 1 A 169 GLY HIS MSE LYS GLY LEU THR GLU LYS LEU MSE ILE LEU SEQRES 2 A 169 SER HIS GLN SER ILE LYS ASN LEU LEU GLY LYS VAL ILE SEQRES 3 A 169 LEU ASN TYR SER GLU GLU ASN VAL ARG GLU ASN GLY TYR SEQRES 4 A 169 ASP LEU ARG ILE CYS GLY ASP LYS TYR TYR GLU LEU VAL SEQRES 5 A 169 GLN GLY ALA GLU LEU PRO GLU LYS LYS ALA THR LEU ARG SEQRES 6 A 169 GLU ILE GLU PHE LYS GLU ARG ALA ILE LEU SER ALA ASN SEQRES 7 A 169 HIS THR TYR LEU PHE GLU SER CYS GLU GLU PHE ASN MSE SEQRES 8 A 169 PRO ALA ASP LEU ALA VAL LEU ILE THR LEU LYS SER THR SEQRES 9 A 169 LEU ALA ARG ASN GLY PHE LEU ALA PRO PRO THR VAL ILE SEQRES 10 A 169 ASP ALA GLY TYR LYS GLY LYS VAL ASN VAL ALA ILE THR SEQRES 11 A 169 ALA VAL TYR ASN SER SER LEU LYS LYS GLY MSE ALA THR SEQRES 12 A 169 HIS HIS LEU ILE PHE LEU LYS LEU ASP LYS PRO THR GLU SEQRES 13 A 169 ARG LEU TYR ASN GLY LYS TYR GLN GLY GLY ILE LEU ILE SEQRES 1 B 169 GLY HIS MSE LYS GLY LEU THR GLU LYS LEU MSE ILE LEU SEQRES 2 B 169 SER HIS GLN SER ILE LYS ASN LEU LEU GLY LYS VAL ILE SEQRES 3 B 169 LEU ASN TYR SER GLU GLU ASN VAL ARG GLU ASN GLY TYR SEQRES 4 B 169 ASP LEU ARG ILE CYS GLY ASP LYS TYR TYR GLU LEU VAL SEQRES 5 B 169 GLN GLY ALA GLU LEU PRO GLU LYS LYS ALA THR LEU ARG SEQRES 6 B 169 GLU ILE GLU PHE LYS GLU ARG ALA ILE LEU SER ALA ASN SEQRES 7 B 169 HIS THR TYR LEU PHE GLU SER CYS GLU GLU PHE ASN MSE SEQRES 8 B 169 PRO ALA ASP LEU ALA VAL LEU ILE THR LEU LYS SER THR SEQRES 9 B 169 LEU ALA ARG ASN GLY PHE LEU ALA PRO PRO THR VAL ILE SEQRES 10 B 169 ASP ALA GLY TYR LYS GLY LYS VAL ASN VAL ALA ILE THR SEQRES 11 B 169 ALA VAL TYR ASN SER SER LEU LYS LYS GLY MSE ALA THR SEQRES 12 B 169 HIS HIS LEU ILE PHE LEU LYS LEU ASP LYS PRO THR GLU SEQRES 13 B 169 ARG LEU TYR ASN GLY LYS TYR GLN GLY GLY ILE LEU ILE SEQRES 1 C 169 GLY HIS MSE LYS GLY LEU THR GLU LYS LEU MSE ILE LEU SEQRES 2 C 169 SER HIS GLN SER ILE LYS ASN LEU LEU GLY LYS VAL ILE SEQRES 3 C 169 LEU ASN TYR SER GLU GLU ASN VAL ARG GLU ASN GLY TYR SEQRES 4 C 169 ASP LEU ARG ILE CYS GLY ASP LYS TYR TYR GLU LEU VAL SEQRES 5 C 169 GLN GLY ALA GLU LEU PRO GLU LYS LYS ALA THR LEU ARG SEQRES 6 C 169 GLU ILE GLU PHE LYS GLU ARG ALA ILE LEU SER ALA ASN SEQRES 7 C 169 HIS THR TYR LEU PHE GLU SER CYS GLU GLU PHE ASN MSE SEQRES 8 C 169 PRO ALA ASP LEU ALA VAL LEU ILE THR LEU LYS SER THR SEQRES 9 C 169 LEU ALA ARG ASN GLY PHE LEU ALA PRO PRO THR VAL ILE SEQRES 10 C 169 ASP ALA GLY TYR LYS GLY LYS VAL ASN VAL ALA ILE THR SEQRES 11 C 169 ALA VAL TYR ASN SER SER LEU LYS LYS GLY MSE ALA THR SEQRES 12 C 169 HIS HIS LEU ILE PHE LEU LYS LEU ASP LYS PRO THR GLU SEQRES 13 C 169 ARG LEU TYR ASN GLY LYS TYR GLN GLY GLY ILE LEU ILE MODRES 2YZJ MSE A 89 MET SELENOMETHIONINE MODRES 2YZJ MSE A 139 MET SELENOMETHIONINE MODRES 2YZJ MSE B 89 MET SELENOMETHIONINE MODRES 2YZJ MSE B 139 MET SELENOMETHIONINE MODRES 2YZJ MSE C 89 MET SELENOMETHIONINE MODRES 2YZJ MSE C 139 MET SELENOMETHIONINE HET MSE A 89 8 HET MSE A 139 8 HET MSE B 89 8 HET MSE B 139 8 HET MSE C 89 8 HET MSE C 139 8 HET DUD A6194 24 HET TRS A6646 8 HET MG B 310 1 HET MG B 290 1 HET MG B 240 1 HET DUD B6294 24 HET DUD C6394 24 HETNAM MSE SELENOMETHIONINE HETNAM DUD DEOXYURIDINE-5'-DIPHOSPHATE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MG MAGNESIUM ION HETSYN TRS TRIS BUFFER FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 DUD 3(C9 H14 N2 O11 P2) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 MG 3(MG 2+) FORMUL 11 HOH *299(H2 O) HELIX 1 1 SER A 12 ASN A 18 1 7 HELIX 2 2 SER A 28 VAL A 32 5 5 HELIX 3 3 LYS A 100 ARG A 105 1 6 HELIX 4 4 SER B 12 ASN B 18 1 7 HELIX 5 5 SER B 28 VAL B 32 5 5 HELIX 6 6 LYS B 100 ARG B 105 1 6 HELIX 7 7 SER C 12 ASN C 18 1 7 HELIX 8 8 SER C 28 VAL C 32 5 5 HELIX 9 9 LYS C 100 ARG C 105 1 6 SHEET 1 A 5 ILE A 24 LEU A 25 0 SHEET 2 A 5 HIS A 77 ASN A 88 -1 O GLU A 86 N LEU A 25 SHEET 3 A 5 TYR A 37 GLN A 51 -1 N CYS A 42 O GLU A 82 SHEET 4 A 5 LYS A 120 ALA A 129 0 SHEET 5 A 5 PHE A 108 LEU A 109 -1 N LEU A 109 O THR A 128 SHEET 1 B 6 THR A 61 GLU A 66 0 SHEET 2 B 6 TYR A 37 GLN A 51 -1 N VAL A 50 O THR A 61 SHEET 3 B 6 HIS A 77 ASN A 88 -1 O GLU A 82 N CYS A 42 SHEET 4 B 6 ALA A 140 LYS A 148 0 SHEET 5 B 6 LEU A 93 LEU A 99 -1 N ALA A 94 O LEU A 147 SHEET 6 B 6 THR A 113 ILE A 115 -1 O THR A 113 N ILE A 97 SHEET 1 C 3 GLU A 54 LEU A 55 0 SHEET 2 C 3 SER B 133 LYS B 136 1 O SER B 134 N LEU A 55 SHEET 3 C 3 ARG B 70 LEU B 73 -1 N LEU B 73 O SER B 133 SHEET 1 D 3 ARG A 70 LEU A 73 0 SHEET 2 D 3 SER A 133 LYS A 136 -1 O SER A 133 N LEU A 73 SHEET 3 D 3 GLU C 54 LEU C 55 1 O LEU C 55 N SER A 134 SHEET 1 E 5 ILE B 24 LEU B 25 0 SHEET 2 E 5 HIS B 77 ASN B 88 -1 O GLU B 86 N LEU B 25 SHEET 3 E 5 TYR B 37 GLN B 51 -1 N CYS B 42 O GLU B 82 SHEET 4 E 5 LYS B 120 ALA B 129 0 SHEET 5 E 5 PHE B 108 LEU B 109 -1 N LEU B 109 O THR B 128 SHEET 1 F 6 THR B 61 GLU B 66 0 SHEET 2 F 6 TYR B 37 GLN B 51 -1 N VAL B 50 O THR B 61 SHEET 3 F 6 HIS B 77 ASN B 88 -1 O GLU B 82 N CYS B 42 SHEET 4 F 6 ALA B 140 LYS B 148 0 SHEET 5 F 6 LEU B 93 LEU B 99 -1 N ALA B 94 O LEU B 147 SHEET 6 F 6 THR B 113 ILE B 115 -1 O THR B 113 N ILE B 97 SHEET 1 G 3 GLU B 54 LEU B 55 0 SHEET 2 G 3 SER C 133 LYS C 136 1 O SER C 134 N LEU B 55 SHEET 3 G 3 ARG C 70 LEU C 73 -1 N LEU C 73 O SER C 133 SHEET 1 H 5 ILE C 24 LEU C 25 0 SHEET 2 H 5 HIS C 77 ASN C 88 -1 O GLU C 86 N LEU C 25 SHEET 3 H 5 TYR C 37 GLN C 51 -1 N CYS C 42 O GLU C 82 SHEET 4 H 5 LYS C 120 ALA C 129 0 SHEET 5 H 5 PHE C 108 LEU C 109 -1 N LEU C 109 O THR C 128 SHEET 1 I 6 THR C 61 GLU C 66 0 SHEET 2 I 6 TYR C 37 GLN C 51 -1 N VAL C 50 O THR C 61 SHEET 3 I 6 HIS C 77 ASN C 88 -1 O GLU C 82 N CYS C 42 SHEET 4 I 6 ALA C 140 LYS C 148 0 SHEET 5 I 6 LEU C 93 LEU C 99 -1 N ALA C 94 O LEU C 147 SHEET 6 I 6 THR C 113 ILE C 115 -1 O THR C 113 N ILE C 97 SSBOND 1 CYS A 42 CYS A 84 1555 1555 2.03 SSBOND 2 CYS B 42 CYS B 84 1555 1555 2.03 SSBOND 3 CYS C 42 CYS C 84 1555 1555 2.03 LINK C ASN A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N PRO A 90 1555 1555 1.37 LINK C GLY A 138 N MSE A 139 1555 1555 1.35 LINK C MSE A 139 N ALA A 140 1555 1555 1.34 LINK C ASN B 88 N MSE B 89 1555 1555 1.33 LINK C MSE B 89 N PRO B 90 1555 1555 1.36 LINK C GLY B 138 N MSE B 139 1555 1555 1.35 LINK C MSE B 139 N ALA B 140 1555 1555 1.34 LINK C ASN C 88 N MSE C 89 1555 1555 1.31 LINK C MSE C 89 N PRO C 90 1555 1555 1.37 LINK C GLY C 138 N MSE C 139 1555 1555 1.35 LINK C MSE C 139 N ALA C 140 1555 1555 1.34 CISPEP 1 LEU A 55 PRO A 56 0 0.11 CISPEP 2 LEU B 55 PRO B 56 0 0.05 CISPEP 3 LEU C 55 PRO C 56 0 0.24 SITE 1 AC1 4 PRO B 112 MG B 240 MG B 290 PRO C 112 SITE 1 AC2 5 PRO A 112 LEU B 96 THR B 98 MG B 240 SITE 2 AC2 5 MG B 310 SITE 1 AC3 5 PRO A 112 PRO B 112 MG B 290 MG B 310 SITE 2 AC3 5 PRO C 112 SITE 1 AC4 18 THR A 113 VAL A 114 ASP A 116 TYR A 119 SITE 2 AC4 18 VAL A 123 ASN A 124 TYR A 157 TYR A 161 SITE 3 AC4 18 HOH A6650 HOH A6656 HOH A6730 HOH A6732 SITE 4 AC4 18 LYS B 100 SER B 101 THR B 102 ARG B 105 SITE 5 AC4 18 HOH B6304 HOH B6388 SITE 1 AC5 17 THR B 113 VAL B 114 ASP B 116 TYR B 119 SITE 2 AC5 17 VAL B 123 ASN B 124 TYR B 157 TYR B 161 SITE 3 AC5 17 HOH B6298 HOH B6305 HOH B6389 LYS C 100 SITE 4 AC5 17 SER C 101 THR C 102 ARG C 105 HOH C6490 SITE 5 AC5 17 HOH C6492 SITE 1 AC6 16 LYS A 100 SER A 101 THR A 102 ARG A 105 SITE 2 AC6 16 HOH A6750 HOH A6752 THR C 113 VAL C 114 SITE 3 AC6 16 ASP C 116 TYR C 119 VAL C 123 ASN C 124 SITE 4 AC6 16 TYR C 157 TYR C 161 HOH C6400 HOH C6472 SITE 1 AC7 8 ASN A 76 VAL A 130 HOH A6664 HOH A6669 SITE 2 AC7 8 ASN B 76 ASN C 76 VAL C 130 HOH C6412 CRYST1 53.770 53.757 53.757 107.47 107.52 107.50 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018598 0.005866 0.009295 0.00000 SCALE2 0.000000 0.019506 0.009284 0.00000 SCALE3 0.000000 0.000000 0.021604 0.00000