HEADER TRANSFERASE 06-MAY-07 2YZK TITLE CRYSTAL STRUCTURE OF OROTATE PHOSPHORIBOSYLTRANSFERASE FROM TITLE 2 AEROPYRUM PERNIX COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES IN DATABASE 10-186; COMPND 5 SYNONYM: OPRT, OPRTASE; COMPND 6 EC: 2.4.2.10; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 56636; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS ROSSMANN FOLD, GLYCOSYLTRANSFERASE, MAGNESIUM, PYRIMIDINE KEYWDS 2 BIOSYNTHESIS, TRANSFERASE, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI EXPDTA X-RAY DIFFRACTION AUTHOR M.KANAGAWA,S.BABA,S.KURAMITSU,S.YOKOYAMA,G.KAWAI,G.SAMPEI, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2YZK 1 VERSN REVDAT 1 06-NOV-07 2YZK 0 JRNL AUTH M.KANAGAWA,S.BABA,S.KURAMITSU,S.YOKOYAMA,G.KAWAI, JRNL AUTH 2 G.SAMPEI JRNL TITL CRYSTAL STRUCTURE OF OROTATE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE FROM AEROPYRUM PERNIX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 288758.890 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 52377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5312 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7494 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 858 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.65000 REMARK 3 B22 (A**2) : -4.54000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.96 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.740 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.250 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.190 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 41.91 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YZK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB027332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789, 0.9794, 0.9000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100801 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.11400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 20% PEG3350, REMARK 280 PH 7.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.31400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.21600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.27600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.21600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.31400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.27600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 178 REMARK 465 GLU B 90 REMARK 465 ARG B 91 REMARK 465 LYS B 92 REMARK 465 GLY B 93 REMARK 465 HIS B 94 REMARK 465 GLY B 95 REMARK 465 THR B 96 REMARK 465 LEU B 97 REMARK 465 GLY B 176 REMARK 465 GLY B 177 REMARK 465 GLU B 178 REMARK 465 PRO C 89 REMARK 465 GLU C 90 REMARK 465 ARG C 91 REMARK 465 LYS C 92 REMARK 465 GLY C 93 REMARK 465 HIS C 94 REMARK 465 GLY C 95 REMARK 465 THR C 96 REMARK 465 LEU C 97 REMARK 465 GLY C 176 REMARK 465 GLY C 177 REMARK 465 GLU C 178 REMARK 465 GLU D 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG MSE D 1 O HOH D 312 2.14 REMARK 500 CG LYS D 4 O HOH D 312 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 67 CA - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 THR A 67 O - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 VAL B 65 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 THR B 67 CA - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 THR B 67 O - C - N ANGL. DEV. = 15.6 DEGREES REMARK 500 THR C 67 CA - C - N ANGL. DEV. = -16.2 DEGREES REMARK 500 THR C 67 O - C - N ANGL. DEV. = 16.7 DEGREES REMARK 500 ALA D 66 O - C - N ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 117 -94.38 -106.39 REMARK 500 THR B 117 -87.65 -111.64 REMARK 500 ALA C 66 109.77 -49.54 REMARK 500 THR C 67 -40.46 -136.17 REMARK 500 THR C 117 -86.56 -111.00 REMARK 500 SER D 59 148.55 -36.73 REMARK 500 THR D 117 -90.04 -106.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 66 THR A 67 37.12 REMARK 500 ALA C 66 THR C 67 40.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 91 0.27 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA B 66 11.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 646 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 647 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APE001002349.1 RELATED DB: TARGETDB DBREF 2YZK A 2 178 UNP Q9Y9D8 PYRE_AERPE 10 186 DBREF 2YZK B 2 178 UNP Q9Y9D8 PYRE_AERPE 10 186 DBREF 2YZK C 2 178 UNP Q9Y9D8 PYRE_AERPE 10 186 DBREF 2YZK D 2 178 UNP Q9Y9D8 PYRE_AERPE 10 186 SEQADV 2YZK MSE A 1 UNP Q9Y9D8 INITIATING METHIONINE SEQADV 2YZK MSE B 1 UNP Q9Y9D8 INITIATING METHIONINE SEQADV 2YZK MSE C 1 UNP Q9Y9D8 INITIATING METHIONINE SEQADV 2YZK MSE D 1 UNP Q9Y9D8 INITIATING METHIONINE SEQRES 1 A 178 MSE LEU ALA LYS VAL LEU LYS LYS ARG GLY ALA VAL LEU SEQRES 2 A 178 ARG GLY ASP PHE VAL LEU SER SER GLY ARG ARG SER SER SEQRES 3 A 178 VAL TYR ILE ASP MSE ARG ARG LEU LEU GLY ASP GLU SER SEQRES 4 A 178 SER TYR SER VAL ALA LEU ASP LEU LEU LEU GLU VAL GLY SEQRES 5 A 178 GLY GLN ASP LEU ALA ARG SER SER ALA VAL ILE GLY VAL SEQRES 6 A 178 ALA THR GLY GLY LEU PRO TRP ALA ALA MSE LEU ALA LEU SEQRES 7 A 178 ARG LEU SER LYS PRO LEU GLY TYR VAL ARG PRO GLU ARG SEQRES 8 A 178 LYS GLY HIS GLY THR LEU SER GLN VAL GLU GLY ASP PRO SEQRES 9 A 178 PRO LYS GLY ARG VAL VAL VAL VAL ASP ASP VAL ALA THR SEQRES 10 A 178 THR GLY THR SER ILE ALA LYS SER ILE GLU VAL LEU ARG SEQRES 11 A 178 SER ASN GLY TYR THR VAL GLY THR ALA LEU VAL LEU VAL SEQRES 12 A 178 ASP ARG GLY GLU GLY ALA GLY GLU LEU LEU ALA ARG MSE SEQRES 13 A 178 GLY VAL ARG LEU VAL SER VAL ALA THR LEU LYS THR ILE SEQRES 14 A 178 LEU GLU LYS LEU GLY TRP GLY GLY GLU SEQRES 1 B 178 MSE LEU ALA LYS VAL LEU LYS LYS ARG GLY ALA VAL LEU SEQRES 2 B 178 ARG GLY ASP PHE VAL LEU SER SER GLY ARG ARG SER SER SEQRES 3 B 178 VAL TYR ILE ASP MSE ARG ARG LEU LEU GLY ASP GLU SER SEQRES 4 B 178 SER TYR SER VAL ALA LEU ASP LEU LEU LEU GLU VAL GLY SEQRES 5 B 178 GLY GLN ASP LEU ALA ARG SER SER ALA VAL ILE GLY VAL SEQRES 6 B 178 ALA THR GLY GLY LEU PRO TRP ALA ALA MSE LEU ALA LEU SEQRES 7 B 178 ARG LEU SER LYS PRO LEU GLY TYR VAL ARG PRO GLU ARG SEQRES 8 B 178 LYS GLY HIS GLY THR LEU SER GLN VAL GLU GLY ASP PRO SEQRES 9 B 178 PRO LYS GLY ARG VAL VAL VAL VAL ASP ASP VAL ALA THR SEQRES 10 B 178 THR GLY THR SER ILE ALA LYS SER ILE GLU VAL LEU ARG SEQRES 11 B 178 SER ASN GLY TYR THR VAL GLY THR ALA LEU VAL LEU VAL SEQRES 12 B 178 ASP ARG GLY GLU GLY ALA GLY GLU LEU LEU ALA ARG MSE SEQRES 13 B 178 GLY VAL ARG LEU VAL SER VAL ALA THR LEU LYS THR ILE SEQRES 14 B 178 LEU GLU LYS LEU GLY TRP GLY GLY GLU SEQRES 1 C 178 MSE LEU ALA LYS VAL LEU LYS LYS ARG GLY ALA VAL LEU SEQRES 2 C 178 ARG GLY ASP PHE VAL LEU SER SER GLY ARG ARG SER SER SEQRES 3 C 178 VAL TYR ILE ASP MSE ARG ARG LEU LEU GLY ASP GLU SER SEQRES 4 C 178 SER TYR SER VAL ALA LEU ASP LEU LEU LEU GLU VAL GLY SEQRES 5 C 178 GLY GLN ASP LEU ALA ARG SER SER ALA VAL ILE GLY VAL SEQRES 6 C 178 ALA THR GLY GLY LEU PRO TRP ALA ALA MSE LEU ALA LEU SEQRES 7 C 178 ARG LEU SER LYS PRO LEU GLY TYR VAL ARG PRO GLU ARG SEQRES 8 C 178 LYS GLY HIS GLY THR LEU SER GLN VAL GLU GLY ASP PRO SEQRES 9 C 178 PRO LYS GLY ARG VAL VAL VAL VAL ASP ASP VAL ALA THR SEQRES 10 C 178 THR GLY THR SER ILE ALA LYS SER ILE GLU VAL LEU ARG SEQRES 11 C 178 SER ASN GLY TYR THR VAL GLY THR ALA LEU VAL LEU VAL SEQRES 12 C 178 ASP ARG GLY GLU GLY ALA GLY GLU LEU LEU ALA ARG MSE SEQRES 13 C 178 GLY VAL ARG LEU VAL SER VAL ALA THR LEU LYS THR ILE SEQRES 14 C 178 LEU GLU LYS LEU GLY TRP GLY GLY GLU SEQRES 1 D 178 MSE LEU ALA LYS VAL LEU LYS LYS ARG GLY ALA VAL LEU SEQRES 2 D 178 ARG GLY ASP PHE VAL LEU SER SER GLY ARG ARG SER SER SEQRES 3 D 178 VAL TYR ILE ASP MSE ARG ARG LEU LEU GLY ASP GLU SER SEQRES 4 D 178 SER TYR SER VAL ALA LEU ASP LEU LEU LEU GLU VAL GLY SEQRES 5 D 178 GLY GLN ASP LEU ALA ARG SER SER ALA VAL ILE GLY VAL SEQRES 6 D 178 ALA THR GLY GLY LEU PRO TRP ALA ALA MSE LEU ALA LEU SEQRES 7 D 178 ARG LEU SER LYS PRO LEU GLY TYR VAL ARG PRO GLU ARG SEQRES 8 D 178 LYS GLY HIS GLY THR LEU SER GLN VAL GLU GLY ASP PRO SEQRES 9 D 178 PRO LYS GLY ARG VAL VAL VAL VAL ASP ASP VAL ALA THR SEQRES 10 D 178 THR GLY THR SER ILE ALA LYS SER ILE GLU VAL LEU ARG SEQRES 11 D 178 SER ASN GLY TYR THR VAL GLY THR ALA LEU VAL LEU VAL SEQRES 12 D 178 ASP ARG GLY GLU GLY ALA GLY GLU LEU LEU ALA ARG MSE SEQRES 13 D 178 GLY VAL ARG LEU VAL SER VAL ALA THR LEU LYS THR ILE SEQRES 14 D 178 LEU GLU LYS LEU GLY TRP GLY GLY GLU MODRES 2YZK MSE A 1 MET SELENOMETHIONINE MODRES 2YZK MSE A 31 MET SELENOMETHIONINE MODRES 2YZK MSE A 75 MET SELENOMETHIONINE MODRES 2YZK MSE A 156 MET SELENOMETHIONINE MODRES 2YZK MSE B 1 MET SELENOMETHIONINE MODRES 2YZK MSE B 31 MET SELENOMETHIONINE MODRES 2YZK MSE B 75 MET SELENOMETHIONINE MODRES 2YZK MSE B 156 MET SELENOMETHIONINE MODRES 2YZK MSE C 1 MET SELENOMETHIONINE MODRES 2YZK MSE C 31 MET SELENOMETHIONINE MODRES 2YZK MSE C 75 MET SELENOMETHIONINE MODRES 2YZK MSE C 156 MET SELENOMETHIONINE MODRES 2YZK MSE D 1 MET SELENOMETHIONINE MODRES 2YZK MSE D 31 MET SELENOMETHIONINE MODRES 2YZK MSE D 75 MET SELENOMETHIONINE MODRES 2YZK MSE D 156 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 31 8 HET MSE A 75 8 HET MSE A 156 8 HET MSE B 1 8 HET MSE B 31 8 HET MSE B 75 8 HET MSE B 156 8 HET MSE C 1 8 HET MSE C 31 8 HET MSE C 75 8 HET MSE C 156 8 HET MSE D 1 8 HET MSE D 31 8 HET MSE D 75 8 HET MSE D 156 8 HET PO4 B 646 5 HET PO4 C 647 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 HOH *338(H2 O) HELIX 1 1 MSE A 1 ARG A 9 1 9 HELIX 2 2 MSE A 31 LEU A 35 5 5 HELIX 3 3 ASP A 37 SER A 59 1 23 HELIX 4 4 GLY A 69 SER A 81 1 13 HELIX 5 5 GLY A 119 ASN A 132 1 14 HELIX 6 6 GLY A 148 ARG A 155 1 8 HELIX 7 7 LEU A 166 LEU A 173 1 8 HELIX 8 8 MSE B 1 ARG B 9 1 9 HELIX 9 9 MSE B 31 GLY B 36 5 6 HELIX 10 10 ASP B 37 ARG B 58 1 22 HELIX 11 11 GLY B 69 SER B 81 1 13 HELIX 12 12 GLY B 119 ASN B 132 1 14 HELIX 13 13 GLY B 148 MSE B 156 1 9 HELIX 14 14 LEU B 166 LEU B 173 1 8 HELIX 15 15 MSE C 1 ARG C 9 1 9 HELIX 16 16 MSE C 31 GLY C 36 5 6 HELIX 17 17 ASP C 37 ARG C 58 1 22 HELIX 18 18 GLY C 69 SER C 81 1 13 HELIX 19 19 GLY C 119 ASN C 132 1 14 HELIX 20 20 GLY C 148 MSE C 156 1 9 HELIX 21 21 LEU C 166 GLY C 174 1 9 HELIX 22 22 MSE D 1 ARG D 9 1 9 HELIX 23 23 MSE D 31 LEU D 35 5 5 HELIX 24 24 ASP D 37 SER D 59 1 23 HELIX 25 25 GLY D 69 SER D 81 1 13 HELIX 26 26 GLY D 119 ASN D 132 1 14 HELIX 27 27 GLY D 148 ARG D 155 1 8 HELIX 28 28 LEU D 166 LEU D 173 1 8 SHEET 1 A 3 VAL A 12 VAL A 18 0 SHEET 2 A 3 ARG A 24 ILE A 29 -1 O SER A 25 N PHE A 17 SHEET 3 A 3 THR D 96 LEU D 97 -1 O LEU D 97 N ARG A 24 SHEET 1 B 5 LEU A 84 VAL A 87 0 SHEET 2 B 5 ALA A 61 VAL A 65 1 N GLY A 64 O GLY A 85 SHEET 3 B 5 ARG A 108 ALA A 116 1 O VAL A 112 N ILE A 63 SHEET 4 B 5 THR A 135 ASP A 144 1 O LEU A 140 N VAL A 111 SHEET 5 B 5 ARG A 159 THR A 165 1 O ARG A 159 N GLY A 137 SHEET 1 C 2 VAL B 12 VAL B 18 0 SHEET 2 C 2 ARG B 24 ILE B 29 -1 O TYR B 28 N LEU B 13 SHEET 1 D 5 LEU B 84 VAL B 87 0 SHEET 2 D 5 ALA B 61 VAL B 65 1 N GLY B 64 O GLY B 85 SHEET 3 D 5 ARG B 108 ALA B 116 1 O VAL B 112 N ILE B 63 SHEET 4 D 5 THR B 135 ASP B 144 1 O LEU B 140 N VAL B 111 SHEET 5 D 5 ARG B 159 THR B 165 1 O ARG B 159 N GLY B 137 SHEET 1 E 2 VAL C 12 VAL C 18 0 SHEET 2 E 2 ARG C 24 ILE C 29 -1 O TYR C 28 N LEU C 13 SHEET 1 F 5 LEU C 84 VAL C 87 0 SHEET 2 F 5 ALA C 61 VAL C 65 1 N GLY C 64 O GLY C 85 SHEET 3 F 5 ARG C 108 ALA C 116 1 O VAL C 112 N ILE C 63 SHEET 4 F 5 THR C 135 ASP C 144 1 O LEU C 140 N VAL C 111 SHEET 5 F 5 ARG C 159 THR C 165 1 O VAL C 161 N ALA C 139 SHEET 1 G 2 VAL D 12 VAL D 18 0 SHEET 2 G 2 ARG D 24 ILE D 29 -1 O SER D 25 N PHE D 17 SHEET 1 H 5 LEU D 84 VAL D 87 0 SHEET 2 H 5 ALA D 61 VAL D 65 1 N GLY D 64 O GLY D 85 SHEET 3 H 5 ARG D 108 ALA D 116 1 O VAL D 110 N ILE D 63 SHEET 4 H 5 THR D 135 ASP D 144 1 O LEU D 140 N VAL D 111 SHEET 5 H 5 ARG D 159 THR D 165 1 O ARG D 159 N GLY D 137 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C ASP A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N ARG A 32 1555 1555 1.33 LINK C ALA A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N LEU A 76 1555 1555 1.33 LINK C ARG A 155 N MSE A 156 1555 1555 1.33 LINK C MSE A 156 N GLY A 157 1555 1555 1.33 LINK C MSE B 1 N LEU B 2 1555 1555 1.33 LINK C ASP B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N ARG B 32 1555 1555 1.33 LINK C ALA B 74 N MSE B 75 1555 1555 1.33 LINK C MSE B 75 N LEU B 76 1555 1555 1.33 LINK C ARG B 155 N MSE B 156 1555 1555 1.33 LINK C MSE B 156 N GLY B 157 1555 1555 1.33 LINK C MSE C 1 N LEU C 2 1555 1555 1.33 LINK C ASP C 30 N MSE C 31 1555 1555 1.33 LINK C MSE C 31 N ARG C 32 1555 1555 1.33 LINK C ALA C 74 N MSE C 75 1555 1555 1.33 LINK C MSE C 75 N LEU C 76 1555 1555 1.33 LINK C ARG C 155 N MSE C 156 1555 1555 1.33 LINK C MSE C 156 N GLY C 157 1555 1555 1.33 LINK C MSE D 1 N LEU D 2 1555 1555 1.33 LINK C ASP D 30 N MSE D 31 1555 1555 1.33 LINK C MSE D 31 N ARG D 32 1555 1555 1.33 LINK C ALA D 74 N MSE D 75 1555 1555 1.33 LINK C MSE D 75 N LEU D 76 1555 1555 1.33 LINK C ARG D 155 N MSE D 156 1555 1555 1.33 LINK C MSE D 156 N GLY D 157 1555 1555 1.33 CISPEP 1 ALA B 66 THR B 67 0 24.70 CISPEP 2 ALA D 66 THR D 67 0 14.09 SITE 1 AC1 9 SER B 20 THR B 117 THR B 118 GLY B 119 SITE 2 AC1 9 THR B 120 SER B 121 HOH B 267 HOH B 650 SITE 3 AC1 9 HOH B 656 SITE 1 AC2 11 SER C 20 THR C 117 THR C 118 GLY C 119 SITE 2 AC2 11 THR C 120 SER C 121 HOH C 671 HOH C 681 SITE 3 AC2 11 HOH C 712 HOH C 715 HOH C 716 CRYST1 60.628 80.552 118.432 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008444 0.00000 HETATM 1 N MSE A 1 39.413 6.094 3.283 1.00 50.61 N HETATM 2 CA MSE A 1 38.716 5.276 4.317 1.00 50.65 C HETATM 3 C MSE A 1 39.726 4.567 5.212 1.00 47.83 C HETATM 4 O MSE A 1 40.174 3.460 4.907 1.00 47.61 O HETATM 5 CB MSE A 1 37.808 4.240 3.647 1.00 54.84 C HETATM 6 CG MSE A 1 36.976 3.401 4.615 1.00 59.89 C HETATM 7 SE MSE A 1 35.644 4.324 5.425 1.00 68.61 SE HETATM 8 CE MSE A 1 36.445 4.829 6.954 1.00 64.98 C