data_2Z13 # _entry.id 2Z13 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Z13 pdb_00002z13 10.2210/pdb2z13/pdb RCSB RCSB027387 ? ? WWPDB D_1000027387 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002022525.4 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Z13 _pdbx_database_status.recvd_initial_deposition_date 2007-05-07 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saito, K.' 1 'Kishishita, S.' 2 'Nishino, A.' 3 'Murayama, K.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Kigawa, T.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Crystal structure of the N-terminal DUF1126 in human EF-hand domain' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Saito, K.' 1 ? primary 'Kishishita, S.' 2 ? primary 'Nishino, A.' 3 ? primary 'Murayama, K.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Kigawa, T.' 7 ? primary 'Yokoyama, S.' 8 ? # _cell.entry_id 2Z13 _cell.length_a 95.460 _cell.length_b 35.280 _cell.length_c 39.150 _cell.angle_alpha 90.00 _cell.angle_beta 112.64 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Z13 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EF-hand domain-containing family member C2' 15343.044 1 ? I118M 'UNP residues 71-190' ? 2 water nat water 18.015 172 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGWVAFDKQVLSFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQVNEPEVKNSGLLQGTSIRRHRITLPPPDE DQFYTVYHFNVGTEVVFYGRTFKIYDCDAFTRNFLRKMGVKVNPPVQSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGWVAFDKQVLSFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQVNEPEVKNSGLLQGTSIRRHRITLPPPDE DQFYTVYHFNVGTEVVFYGRTFKIYDCDAFTRNFLRKMGVKVNPPVQSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002022525.4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TRP n 1 9 VAL n 1 10 ALA n 1 11 PHE n 1 12 ASP n 1 13 LYS n 1 14 GLN n 1 15 VAL n 1 16 LEU n 1 17 SER n 1 18 PHE n 1 19 ASP n 1 20 ALA n 1 21 TYR n 1 22 LEU n 1 23 GLU n 1 24 GLU n 1 25 GLU n 1 26 VAL n 1 27 LEU n 1 28 ASP n 1 29 LYS n 1 30 SER n 1 31 GLN n 1 32 THR n 1 33 ASN n 1 34 TYR n 1 35 ARG n 1 36 ILE n 1 37 ARG n 1 38 TYR n 1 39 TYR n 1 40 LYS n 1 41 ILE n 1 42 TYR n 1 43 PHE n 1 44 TYR n 1 45 PRO n 1 46 GLU n 1 47 ASP n 1 48 ASP n 1 49 THR n 1 50 ILE n 1 51 GLN n 1 52 VAL n 1 53 ASN n 1 54 GLU n 1 55 PRO n 1 56 GLU n 1 57 VAL n 1 58 LYS n 1 59 ASN n 1 60 SER n 1 61 GLY n 1 62 LEU n 1 63 LEU n 1 64 GLN n 1 65 GLY n 1 66 THR n 1 67 SER n 1 68 ILE n 1 69 ARG n 1 70 ARG n 1 71 HIS n 1 72 ARG n 1 73 ILE n 1 74 THR n 1 75 LEU n 1 76 PRO n 1 77 PRO n 1 78 PRO n 1 79 ASP n 1 80 GLU n 1 81 ASP n 1 82 GLN n 1 83 PHE n 1 84 TYR n 1 85 THR n 1 86 VAL n 1 87 TYR n 1 88 HIS n 1 89 PHE n 1 90 ASN n 1 91 VAL n 1 92 GLY n 1 93 THR n 1 94 GLU n 1 95 VAL n 1 96 VAL n 1 97 PHE n 1 98 TYR n 1 99 GLY n 1 100 ARG n 1 101 THR n 1 102 PHE n 1 103 LYS n 1 104 ILE n 1 105 TYR n 1 106 ASP n 1 107 CYS n 1 108 ASP n 1 109 ALA n 1 110 PHE n 1 111 THR n 1 112 ARG n 1 113 ASN n 1 114 PHE n 1 115 LEU n 1 116 ARG n 1 117 LYS n 1 118 MET n 1 119 GLY n 1 120 VAL n 1 121 LYS n 1 122 VAL n 1 123 ASN n 1 124 PRO n 1 125 PRO n 1 126 VAL n 1 127 GLN n 1 128 SER n 1 129 GLY n 1 130 PRO n 1 131 SER n 1 132 SER n 1 133 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene EFHC2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PX060518-19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EFHC2_HUMAN _struct_ref.pdbx_db_accession Q5JST6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;WVAFDKQVLSFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQVNEPEVKNSGLLQGTSIRRHRITLPPPDEDQFYTVY HFNVGTEVVFYGRTFKIYDCDAFTRNFLRKIGVKVNPPVQ ; _struct_ref.pdbx_align_begin 71 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Z13 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5JST6 _struct_ref_seq.db_align_beg 71 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 190 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Z13 GLY A 1 ? UNP Q5JST6 ? ? 'expression tag' 1 1 1 2Z13 SER A 2 ? UNP Q5JST6 ? ? 'expression tag' 2 2 1 2Z13 SER A 3 ? UNP Q5JST6 ? ? 'expression tag' 3 3 1 2Z13 GLY A 4 ? UNP Q5JST6 ? ? 'expression tag' 4 4 1 2Z13 SER A 5 ? UNP Q5JST6 ? ? 'expression tag' 5 5 1 2Z13 SER A 6 ? UNP Q5JST6 ? ? 'expression tag' 6 6 1 2Z13 GLY A 7 ? UNP Q5JST6 ? ? 'expression tag' 7 7 1 2Z13 MET A 118 ? UNP Q5JST6 ILE 181 'engineered mutation' 118 8 1 2Z13 SER A 128 ? UNP Q5JST6 ? ? 'expression tag' 128 9 1 2Z13 GLY A 129 ? UNP Q5JST6 ? ? 'expression tag' 129 10 1 2Z13 PRO A 130 ? UNP Q5JST6 ? ? 'expression tag' 130 11 1 2Z13 SER A 131 ? UNP Q5JST6 ? ? 'expression tag' 131 12 1 2Z13 SER A 132 ? UNP Q5JST6 ? ? 'expression tag' 132 13 1 2Z13 GLY A 133 ? UNP Q5JST6 ? ? 'expression tag' 133 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Z13 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '0.2M Sodium iodate, 0.1M Bis-Tris, 20% PEG3350, pH7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2006-11-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si II' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9790 1.0 2 0.9793 1.0 3 0.964 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9790, 0.9793, 0.964' # _reflns.entry_id 2Z13 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.84 _reflns.number_obs 10156 _reflns.number_all ? _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.037 _reflns.pdbx_netI_over_sigmaI 45.1 _reflns.B_iso_Wilson_estimate 7.6 _reflns.pdbx_redundancy 3.49 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.84 _reflns_shell.d_res_low 1.94 _reflns_shell.percent_possible_all 95.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.058 _reflns_shell.meanI_over_sigI_obs 27.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2Z13 _refine.ls_number_reflns_obs 10156 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 346110.00 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.41 _refine.ls_d_res_high 1.84 _refine.ls_percent_reflns_obs 90.3 _refine.ls_R_factor_obs 0.181 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.181 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 507 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 14.3 _refine.aniso_B[1][1] 1.63 _refine.aniso_B[2][2] -0.79 _refine.aniso_B[3][3] -0.84 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 1.57 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.38435 _refine.solvent_model_param_bsol 48.6108 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2Z13 _refine_analyze.Luzzati_coordinate_error_obs 0.17 _refine_analyze.Luzzati_sigma_a_obs 0.04 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.21 _refine_analyze.Luzzati_sigma_a_free 0.07 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 992 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 172 _refine_hist.number_atoms_total 1164 _refine_hist.d_res_high 1.84 _refine_hist.d_res_low 35.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.72 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.68 _refine_ls_shell.d_res_low 1.79 _refine_ls_shell.number_reflns_R_work 0 _refine_ls_shell.R_factor_R_work 0.227 _refine_ls_shell.percent_reflns_obs . _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2Z13 _struct.title 'Crystal structure of the N-terminal DUF1126 in human EF-hand domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z13 _struct_keywords.pdbx_keywords 'Structural genomics, unknown function' _struct_keywords.text ;DUF1126, human ef-hand, Alternative splicing, Polymorphism, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, unknown function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 85 ? PHE A 89 ? THR A 85 PHE A 89 5 ? 5 HELX_P HELX_P2 2 ASP A 108 ? MET A 118 ? ASP A 108 MET A 118 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.34 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 67 ? HIS A 71 ? SER A 67 HIS A 71 A 2 THR A 49 ? ASN A 53 ? THR A 49 ASN A 53 A 3 GLN A 31 ? TYR A 44 ? GLN A 31 TYR A 44 A 4 LEU A 16 ? ASP A 28 ? LEU A 16 ASP A 28 A 5 ARG A 100 ? CYS A 107 ? ARG A 100 CYS A 107 A 6 GLU A 94 ? PHE A 97 ? GLU A 94 PHE A 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 71 ? O HIS A 71 N ILE A 50 ? N ILE A 50 A 2 3 O GLN A 51 ? O GLN A 51 N TYR A 42 ? N TYR A 42 A 3 4 O GLN A 31 ? O GLN A 31 N ASP A 28 ? N ASP A 28 A 4 5 N TYR A 21 ? N TYR A 21 O LYS A 103 ? O LYS A 103 A 5 6 O PHE A 102 ? O PHE A 102 N VAL A 95 ? N VAL A 95 # _database_PDB_matrix.entry_id 2Z13 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Z13 _atom_sites.fract_transf_matrix[1][1] 0.010476 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004369 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028345 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027675 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 VAL 57 57 ? ? ? A . n A 1 58 LYS 58 58 ? ? ? A . n A 1 59 ASN 59 59 ? ? ? A . n A 1 60 SER 60 60 ? ? ? A . n A 1 61 GLY 61 61 ? ? ? A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 MET 118 118 118 MET MET A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 SER 128 128 ? ? ? A . n A 1 129 GLY 129 129 ? ? ? A . n A 1 130 PRO 130 130 ? ? ? A . n A 1 131 SER 131 131 ? ? ? A . n A 1 132 SER 132 132 ? ? ? A . n A 1 133 GLY 133 133 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 134 1 HOH TIP A . B 2 HOH 2 135 2 HOH TIP A . B 2 HOH 3 136 3 HOH TIP A . B 2 HOH 4 137 4 HOH TIP A . B 2 HOH 5 138 5 HOH TIP A . B 2 HOH 6 139 6 HOH TIP A . B 2 HOH 7 140 7 HOH TIP A . B 2 HOH 8 141 8 HOH TIP A . B 2 HOH 9 142 9 HOH TIP A . B 2 HOH 10 143 10 HOH TIP A . B 2 HOH 11 144 11 HOH TIP A . B 2 HOH 12 145 12 HOH TIP A . B 2 HOH 13 146 13 HOH TIP A . B 2 HOH 14 147 14 HOH TIP A . B 2 HOH 15 148 15 HOH TIP A . B 2 HOH 16 149 16 HOH TIP A . B 2 HOH 17 150 17 HOH TIP A . B 2 HOH 18 151 18 HOH TIP A . B 2 HOH 19 152 19 HOH TIP A . B 2 HOH 20 153 20 HOH TIP A . B 2 HOH 21 154 22 HOH TIP A . B 2 HOH 22 155 23 HOH TIP A . B 2 HOH 23 156 24 HOH TIP A . B 2 HOH 24 157 25 HOH TIP A . B 2 HOH 25 158 26 HOH TIP A . B 2 HOH 26 159 27 HOH TIP A . B 2 HOH 27 160 28 HOH TIP A . B 2 HOH 28 161 29 HOH TIP A . B 2 HOH 29 162 30 HOH TIP A . B 2 HOH 30 163 31 HOH TIP A . B 2 HOH 31 164 32 HOH TIP A . B 2 HOH 32 165 33 HOH TIP A . B 2 HOH 33 166 36 HOH TIP A . B 2 HOH 34 167 37 HOH TIP A . B 2 HOH 35 168 38 HOH TIP A . B 2 HOH 36 169 39 HOH TIP A . B 2 HOH 37 170 40 HOH TIP A . B 2 HOH 38 171 41 HOH TIP A . B 2 HOH 39 172 42 HOH TIP A . B 2 HOH 40 173 43 HOH TIP A . B 2 HOH 41 174 44 HOH TIP A . B 2 HOH 42 175 45 HOH TIP A . B 2 HOH 43 176 46 HOH TIP A . B 2 HOH 44 177 47 HOH TIP A . B 2 HOH 45 178 48 HOH TIP A . B 2 HOH 46 179 50 HOH TIP A . B 2 HOH 47 180 51 HOH TIP A . B 2 HOH 48 181 52 HOH TIP A . B 2 HOH 49 182 53 HOH TIP A . B 2 HOH 50 183 54 HOH TIP A . B 2 HOH 51 184 55 HOH TIP A . B 2 HOH 52 185 56 HOH TIP A . B 2 HOH 53 186 57 HOH TIP A . B 2 HOH 54 187 58 HOH TIP A . B 2 HOH 55 188 59 HOH TIP A . B 2 HOH 56 189 60 HOH TIP A . B 2 HOH 57 190 61 HOH TIP A . B 2 HOH 58 191 62 HOH TIP A . B 2 HOH 59 192 64 HOH TIP A . B 2 HOH 60 193 65 HOH TIP A . B 2 HOH 61 194 66 HOH TIP A . B 2 HOH 62 195 67 HOH TIP A . B 2 HOH 63 196 68 HOH TIP A . B 2 HOH 64 197 70 HOH TIP A . B 2 HOH 65 198 71 HOH TIP A . B 2 HOH 66 199 72 HOH TIP A . B 2 HOH 67 200 73 HOH TIP A . B 2 HOH 68 201 74 HOH TIP A . B 2 HOH 69 202 75 HOH TIP A . B 2 HOH 70 203 76 HOH TIP A . B 2 HOH 71 204 77 HOH TIP A . B 2 HOH 72 205 78 HOH TIP A . B 2 HOH 73 206 79 HOH TIP A . B 2 HOH 74 207 80 HOH TIP A . B 2 HOH 75 208 81 HOH TIP A . B 2 HOH 76 209 83 HOH TIP A . B 2 HOH 77 210 84 HOH TIP A . B 2 HOH 78 211 85 HOH TIP A . B 2 HOH 79 212 86 HOH TIP A . B 2 HOH 80 213 87 HOH TIP A . B 2 HOH 81 214 89 HOH TIP A . B 2 HOH 82 215 90 HOH TIP A . B 2 HOH 83 216 91 HOH TIP A . B 2 HOH 84 217 92 HOH TIP A . B 2 HOH 85 218 93 HOH TIP A . B 2 HOH 86 219 94 HOH TIP A . B 2 HOH 87 220 95 HOH TIP A . B 2 HOH 88 221 96 HOH TIP A . B 2 HOH 89 222 97 HOH TIP A . B 2 HOH 90 223 98 HOH TIP A . B 2 HOH 91 224 99 HOH TIP A . B 2 HOH 92 225 100 HOH TIP A . B 2 HOH 93 226 101 HOH TIP A . B 2 HOH 94 227 102 HOH TIP A . B 2 HOH 95 228 103 HOH TIP A . B 2 HOH 96 229 104 HOH TIP A . B 2 HOH 97 230 105 HOH TIP A . B 2 HOH 98 231 107 HOH TIP A . B 2 HOH 99 232 110 HOH TIP A . B 2 HOH 100 233 111 HOH TIP A . B 2 HOH 101 234 112 HOH TIP A . B 2 HOH 102 235 113 HOH TIP A . B 2 HOH 103 236 114 HOH TIP A . B 2 HOH 104 237 115 HOH TIP A . B 2 HOH 105 238 116 HOH TIP A . B 2 HOH 106 239 117 HOH TIP A . B 2 HOH 107 240 118 HOH TIP A . B 2 HOH 108 241 119 HOH TIP A . B 2 HOH 109 242 120 HOH TIP A . B 2 HOH 110 243 121 HOH TIP A . B 2 HOH 111 244 122 HOH TIP A . B 2 HOH 112 245 123 HOH TIP A . B 2 HOH 113 246 127 HOH TIP A . B 2 HOH 114 247 128 HOH TIP A . B 2 HOH 115 248 129 HOH TIP A . B 2 HOH 116 249 130 HOH TIP A . B 2 HOH 117 250 131 HOH TIP A . B 2 HOH 118 251 132 HOH TIP A . B 2 HOH 119 252 133 HOH TIP A . B 2 HOH 120 253 134 HOH TIP A . B 2 HOH 121 254 135 HOH TIP A . B 2 HOH 122 255 136 HOH TIP A . B 2 HOH 123 256 137 HOH TIP A . B 2 HOH 124 257 138 HOH TIP A . B 2 HOH 125 258 139 HOH TIP A . B 2 HOH 126 259 141 HOH TIP A . B 2 HOH 127 260 142 HOH TIP A . B 2 HOH 128 261 143 HOH TIP A . B 2 HOH 129 262 144 HOH TIP A . B 2 HOH 130 263 145 HOH TIP A . B 2 HOH 131 264 146 HOH TIP A . B 2 HOH 132 265 147 HOH TIP A . B 2 HOH 133 266 148 HOH TIP A . B 2 HOH 134 267 149 HOH TIP A . B 2 HOH 135 268 150 HOH TIP A . B 2 HOH 136 269 151 HOH TIP A . B 2 HOH 137 270 152 HOH TIP A . B 2 HOH 138 271 153 HOH TIP A . B 2 HOH 139 272 154 HOH TIP A . B 2 HOH 140 273 155 HOH TIP A . B 2 HOH 141 274 156 HOH TIP A . B 2 HOH 142 275 157 HOH TIP A . B 2 HOH 143 276 158 HOH TIP A . B 2 HOH 144 277 159 HOH TIP A . B 2 HOH 145 278 160 HOH TIP A . B 2 HOH 146 279 161 HOH TIP A . B 2 HOH 147 280 163 HOH TIP A . B 2 HOH 148 281 164 HOH TIP A . B 2 HOH 149 282 165 HOH TIP A . B 2 HOH 150 283 166 HOH TIP A . B 2 HOH 151 284 171 HOH TIP A . B 2 HOH 152 285 172 HOH TIP A . B 2 HOH 153 286 173 HOH TIP A . B 2 HOH 154 287 174 HOH TIP A . B 2 HOH 155 288 175 HOH TIP A . B 2 HOH 156 289 176 HOH TIP A . B 2 HOH 157 290 177 HOH TIP A . B 2 HOH 158 291 178 HOH TIP A . B 2 HOH 159 292 179 HOH TIP A . B 2 HOH 160 293 180 HOH TIP A . B 2 HOH 161 294 181 HOH TIP A . B 2 HOH 162 295 182 HOH TIP A . B 2 HOH 163 296 183 HOH TIP A . B 2 HOH 164 297 184 HOH TIP A . B 2 HOH 165 298 185 HOH TIP A . B 2 HOH 166 299 186 HOH TIP A . B 2 HOH 167 300 187 HOH TIP A . B 2 HOH 168 301 188 HOH TIP A . B 2 HOH 169 302 189 HOH TIP A . B 2 HOH 170 303 190 HOH TIP A . B 2 HOH 171 304 191 HOH TIP A . B 2 HOH 172 305 192 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 11 ? ? -115.84 65.03 2 1 LYS A 29 ? ? 72.61 -90.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ARG 35 ? CZ ? A ARG 35 CZ 2 1 Y 0 A CYS 107 ? CB ? A CYS 107 CB 3 1 Y 0 A MET 118 ? CE ? A MET 118 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A VAL 57 ? A VAL 57 7 1 Y 1 A LYS 58 ? A LYS 58 8 1 Y 1 A ASN 59 ? A ASN 59 9 1 Y 1 A SER 60 ? A SER 60 10 1 Y 1 A GLY 61 ? A GLY 61 11 1 Y 1 A SER 128 ? A SER 128 12 1 Y 1 A GLY 129 ? A GLY 129 13 1 Y 1 A PRO 130 ? A PRO 130 14 1 Y 1 A SER 131 ? A SER 131 15 1 Y 1 A SER 132 ? A SER 132 16 1 Y 1 A GLY 133 ? A GLY 133 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #