HEADER OXIDOREDUCTASE 10-MAY-07 2Z1N TITLE CRYSTAL STRUCTURE OF APE0912 FROM AEROPYRUM PERNIX K1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SHORT-CHAIN DEHYDROGENASE/REDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 272557; SOURCE 4 STRAIN: K1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS DEHYDROGENASE, REDUCTASE, SDR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ICHIMURA,A.YAMAMURA,F.MIMOTO,J.OHTSUKA,K.MIYAZONO,M.OKAI,M.KAMO,W.- AUTHOR 2 C.LEE,K.NAGATA,M.TANOKURA REVDAT 4 01-NOV-23 2Z1N 1 REMARK REVDAT 3 13-JUL-11 2Z1N 1 VERSN REVDAT 2 24-FEB-09 2Z1N 1 VERSN REVDAT 1 18-MAR-08 2Z1N 0 JRNL AUTH A.YAMAMURA,T.ICHIMURA,F.MIMOTO,J.OHTSUKA,K.MIYAZONO,M.OKAI, JRNL AUTH 2 M.KAMO,W.-C.LEE,K.NAGATA,M.TANOKURA JRNL TITL A UNIQUE CATALYTIC TRIAD REVEALED BY THE CRYSTAL STRUCTURE JRNL TITL 2 OF APE0912, A SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY JRNL TITL 3 PROTEIN FROM AEROPYRUM PERNIX K1 JRNL REF PROTEINS V. 70 1640 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18175326 JRNL DOI 10.1002/PROT.21860 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 39359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2128 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2879 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3591 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4865 ; 1.513 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 6.104 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;30.170 ;22.126 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;13.784 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;15.666 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2642 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1799 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2491 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 290 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.178 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2364 ; 0.892 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3756 ; 1.492 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1273 ; 2.515 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1109 ; 3.996 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60040 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1O5I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5% PEG 8000, 0.05M TRIS-HCL, 0.025M REMARK 280 MES-NAOH, 0.1M SODIUM CHLORIDE, 2.5MM NADPH, PH 8.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.37950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.43450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.37950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.43450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -156.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 110.75900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 110.75900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 197 REMARK 465 LEU A 198 REMARK 465 ALA A 199 REMARK 465 GLU A 200 REMARK 465 GLU A 201 REMARK 465 ARG A 202 REMARK 465 ALA A 203 REMARK 465 ARG A 204 REMARK 465 ARG A 205 REMARK 465 SER A 206 REMARK 465 GLY A 207 REMARK 465 ILE A 208 REMARK 465 THR A 209 REMARK 465 VAL A 210 REMARK 465 GLU A 211 REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 465 LEU A 214 REMARK 465 LYS A 215 REMARK 465 SER A 216 REMARK 465 MET A 217 REMARK 465 ALA A 218 REMARK 465 SER A 219 REMARK 465 ALA B 199 REMARK 465 GLU B 200 REMARK 465 GLU B 201 REMARK 465 ARG B 202 REMARK 465 ALA B 203 REMARK 465 ARG B 204 REMARK 465 ARG B 205 REMARK 465 SER B 206 REMARK 465 GLY B 207 REMARK 465 ILE B 208 REMARK 465 THR B 209 REMARK 465 VAL B 210 REMARK 465 GLU B 211 REMARK 465 GLU B 212 REMARK 465 ALA B 213 REMARK 465 LEU B 214 REMARK 465 LYS B 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 41 NE CZ NH1 NH2 REMARK 470 GLU A 103 OE2 REMARK 470 ARG A 149 CZ NH1 NH2 REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 39 CD NE CZ NH1 NH2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 LYS B 43 CE NZ REMARK 470 GLN B 59 CD OE1 NE2 REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 97 NH1 NH2 REMARK 470 ARG B 100 NH1 NH2 REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 ARG B 194 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 198 CG CD1 CD2 REMARK 470 ARG B 220 NH1 REMARK 470 LYS B 228 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 244 31.59 -88.04 REMARK 500 ASP A 255 20.82 -141.92 REMARK 500 ALA B 14 50.93 39.78 REMARK 500 SER B 188 -83.17 -91.26 REMARK 500 ASP B 255 14.40 -145.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 87 OD1 REMARK 620 2 TRP A 136 O 131.4 REMARK 620 3 HOH A2136 O 88.9 137.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2020 O REMARK 620 2 HOH A2074 O 107.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2001 DBREF 2Z1N A 1 260 UNP Q9YDK1 Q9YDK1_AERPE 1 260 DBREF 2Z1N B 1 260 UNP Q9YDK1 Q9YDK1_AERPE 1 260 SEQRES 1 A 260 MET ASP LEU GLY ILE GLN GLY LYS LEU ALA VAL VAL THR SEQRES 2 A 260 ALA GLY SER SER GLY LEU GLY PHE ALA SER ALA LEU GLU SEQRES 3 A 260 LEU ALA ARG ASN GLY ALA ARG LEU LEU LEU PHE SER ARG SEQRES 4 A 260 ASN ARG GLU LYS LEU GLU ALA ALA ALA SER ARG ILE ALA SEQRES 5 A 260 SER LEU VAL SER GLY ALA GLN VAL ASP ILE VAL ALA GLY SEQRES 6 A 260 ASP ILE ARG GLU PRO GLY ASP ILE ASP ARG LEU PHE GLU SEQRES 7 A 260 LYS ALA ARG ASP LEU GLY GLY ALA ASP ILE LEU VAL TYR SEQRES 8 A 260 SER THR GLY GLY PRO ARG PRO GLY ARG PHE MET GLU LEU SEQRES 9 A 260 GLY VAL GLU ASP TRP ASP GLU SER TYR ARG LEU LEU ALA SEQRES 10 A 260 ARG SER ALA VAL TRP VAL GLY ARG ARG ALA ALA GLU GLN SEQRES 11 A 260 MET VAL GLU LYS GLY TRP GLY ARG MET VAL TYR ILE GLY SEQRES 12 A 260 SER VAL THR LEU LEU ARG PRO TRP GLN ASP LEU ALA LEU SEQRES 13 A 260 SER ASN ILE MET ARG LEU PRO VAL ILE GLY VAL VAL ARG SEQRES 14 A 260 THR LEU ALA LEU GLU LEU ALA PRO HIS GLY VAL THR VAL SEQRES 15 A 260 ASN ALA VAL LEU PRO SER LEU ILE LEU THR ASP ARG VAL SEQRES 16 A 260 ARG SER LEU ALA GLU GLU ARG ALA ARG ARG SER GLY ILE SEQRES 17 A 260 THR VAL GLU GLU ALA LEU LYS SER MET ALA SER ARG ILE SEQRES 18 A 260 PRO MET GLY ARG VAL GLY LYS PRO GLU GLU LEU ALA SER SEQRES 19 A 260 VAL VAL ALA PHE LEU ALA SER GLU LYS ALA SER PHE ILE SEQRES 20 A 260 THR GLY ALA VAL ILE PRO VAL ASP GLY GLY ALA HIS ILE SEQRES 1 B 260 MET ASP LEU GLY ILE GLN GLY LYS LEU ALA VAL VAL THR SEQRES 2 B 260 ALA GLY SER SER GLY LEU GLY PHE ALA SER ALA LEU GLU SEQRES 3 B 260 LEU ALA ARG ASN GLY ALA ARG LEU LEU LEU PHE SER ARG SEQRES 4 B 260 ASN ARG GLU LYS LEU GLU ALA ALA ALA SER ARG ILE ALA SEQRES 5 B 260 SER LEU VAL SER GLY ALA GLN VAL ASP ILE VAL ALA GLY SEQRES 6 B 260 ASP ILE ARG GLU PRO GLY ASP ILE ASP ARG LEU PHE GLU SEQRES 7 B 260 LYS ALA ARG ASP LEU GLY GLY ALA ASP ILE LEU VAL TYR SEQRES 8 B 260 SER THR GLY GLY PRO ARG PRO GLY ARG PHE MET GLU LEU SEQRES 9 B 260 GLY VAL GLU ASP TRP ASP GLU SER TYR ARG LEU LEU ALA SEQRES 10 B 260 ARG SER ALA VAL TRP VAL GLY ARG ARG ALA ALA GLU GLN SEQRES 11 B 260 MET VAL GLU LYS GLY TRP GLY ARG MET VAL TYR ILE GLY SEQRES 12 B 260 SER VAL THR LEU LEU ARG PRO TRP GLN ASP LEU ALA LEU SEQRES 13 B 260 SER ASN ILE MET ARG LEU PRO VAL ILE GLY VAL VAL ARG SEQRES 14 B 260 THR LEU ALA LEU GLU LEU ALA PRO HIS GLY VAL THR VAL SEQRES 15 B 260 ASN ALA VAL LEU PRO SER LEU ILE LEU THR ASP ARG VAL SEQRES 16 B 260 ARG SER LEU ALA GLU GLU ARG ALA ARG ARG SER GLY ILE SEQRES 17 B 260 THR VAL GLU GLU ALA LEU LYS SER MET ALA SER ARG ILE SEQRES 18 B 260 PRO MET GLY ARG VAL GLY LYS PRO GLU GLU LEU ALA SER SEQRES 19 B 260 VAL VAL ALA PHE LEU ALA SER GLU LYS ALA SER PHE ILE SEQRES 20 B 260 THR GLY ALA VAL ILE PRO VAL ASP GLY GLY ALA HIS ILE HET NA A1001 1 HET NA A2001 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *358(H2 O) HELIX 1 1 SER A 17 ASN A 30 1 14 HELIX 2 2 ASN A 40 VAL A 55 1 16 HELIX 3 3 GLU A 69 LEU A 83 1 15 HELIX 4 4 ARG A 100 LEU A 104 5 5 HELIX 5 5 GLY A 105 LEU A 116 1 12 HELIX 6 6 LEU A 116 GLY A 135 1 20 HELIX 7 7 SER A 144 LEU A 148 5 5 HELIX 8 8 TRP A 151 ASP A 153 5 3 HELIX 9 9 LEU A 154 ARG A 161 1 8 HELIX 10 10 ARG A 161 ALA A 176 1 16 HELIX 11 11 SER A 188 ASP A 193 1 6 HELIX 12 12 LYS A 228 ALA A 240 1 13 HELIX 13 13 SER A 241 SER A 245 5 5 HELIX 14 14 SER B 17 ASN B 30 1 14 HELIX 15 15 ASN B 40 VAL B 55 1 16 HELIX 16 16 GLU B 69 LEU B 83 1 15 HELIX 17 17 ARG B 100 LEU B 104 5 5 HELIX 18 18 GLY B 105 ALA B 117 1 13 HELIX 19 19 ALA B 117 GLY B 135 1 19 HELIX 20 20 SER B 144 LEU B 148 5 5 HELIX 21 21 TRP B 151 ASP B 153 5 3 HELIX 22 22 LEU B 154 ARG B 161 1 8 HELIX 23 23 LEU B 162 ALA B 176 1 15 HELIX 24 24 THR B 192 LEU B 198 1 7 HELIX 25 25 LYS B 228 ALA B 240 1 13 HELIX 26 26 SER B 241 SER B 245 5 5 SHEET 1 A 7 VAL A 60 ALA A 64 0 SHEET 2 A 7 ARG A 33 SER A 38 1 N LEU A 36 O ASP A 61 SHEET 3 A 7 LEU A 9 THR A 13 1 N ALA A 10 O ARG A 33 SHEET 4 A 7 ILE A 88 TYR A 91 1 O ILE A 88 N VAL A 11 SHEET 5 A 7 GLY A 137 ILE A 142 1 O ARG A 138 N LEU A 89 SHEET 6 A 7 VAL A 180 PRO A 187 1 O ASN A 183 N TYR A 141 SHEET 7 A 7 VAL A 251 VAL A 254 1 O VAL A 254 N LEU A 186 SHEET 1 B 7 VAL B 60 ALA B 64 0 SHEET 2 B 7 ARG B 33 SER B 38 1 N LEU B 34 O ASP B 61 SHEET 3 B 7 LEU B 9 THR B 13 1 N ALA B 10 O LEU B 35 SHEET 4 B 7 ILE B 88 TYR B 91 1 O VAL B 90 N VAL B 11 SHEET 5 B 7 GLY B 137 ILE B 142 1 O VAL B 140 N TYR B 91 SHEET 6 B 7 VAL B 180 PRO B 187 1 O ASN B 183 N TYR B 141 SHEET 7 B 7 VAL B 251 VAL B 254 1 O ILE B 252 N ALA B 184 LINK OD1 ASP A 87 NA NA A1001 1555 1555 2.71 LINK O TRP A 136 NA NA A1001 1555 1555 2.85 LINK NA NA A1001 O HOH A2136 1555 1555 2.23 LINK NA NA A2001 O HOH A2020 1555 1555 2.93 LINK NA NA A2001 O HOH A2074 1555 1555 2.81 SITE 1 AC1 4 ASP A 87 LYS A 134 TRP A 136 HOH A2136 SITE 1 AC2 4 THR A 93 GLY A 94 HOH A2020 HOH A2074 CRYST1 110.759 68.869 69.340 90.00 119.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009029 0.000000 0.005004 0.00000 SCALE2 0.000000 0.014520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016489 0.00000