HEADER HYDROLASE 21-MAY-07 2Z2E TITLE CRYSTAL STRUCTURE OF CANINE MILK LYSOZYME STABILIZED AGAINST NON- TITLE 2 ENZYMATIC DEAMIDATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C, MILK ISOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 STRAIN: FAMILIARIS; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPIC3 KEYWDS LYSOZYME C, MILK LYSOZYME, 1, 4-BETA-N-ACETYLMURAMIDASE C, KEYWDS 2 BACTERIOLYTIC ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NONAKA,D.AKIEDA,N.WATANABE,I.TANAKA,M.KAMIYA,T.AIZAWA,K.NITTA, AUTHOR 2 M.DEMURA,K.KAWANO REVDAT 5 01-NOV-23 2Z2E 1 REMARK REVDAT 4 10-NOV-21 2Z2E 1 REMARK SEQADV REVDAT 3 24-FEB-09 2Z2E 1 VERSN REVDAT 2 27-MAY-08 2Z2E 1 JRNL REVDAT 1 27-NOV-07 2Z2E 0 JRNL AUTH Y.NONAKA,T.AIZAWA,D.AKIEDA,M.YASUI,M.WATANABE,N.WATANABE, JRNL AUTH 2 I.TANAKA,M.KAMIYA,M.MIZUGUCHI,M.DEMURA,K.KAWANO JRNL TITL SPONTANEOUS ASPARAGINYL DEAMIDATION OF CANINE MILK LYSOZYME JRNL TITL 2 UNDER MILD CONDITIONS JRNL REF PROTEINS V. 72 313 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18214981 JRNL DOI 10.1002/PROT.21927 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 12996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.280 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.413 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 682 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 956 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.4840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2030 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.358 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.276 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.847 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.679 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.032 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 2.774 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ;10.916 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;39.940 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ;22.279 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ;16.091 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.208 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.013 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; 0.300 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; 0.319 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; 0.395 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; 0.422 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; 0.477 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; 1.368 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; 2.021 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; 3.660 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; 4.774 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9270 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.99 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CWI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM SODIUM CITRATE, 1M AMMONIUM REMARK 280 SULFATE, 5% ETHYLENE GLYCOL, 2.5% ISO-PROPANOL, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.20467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.10233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 96 CD LYS B 100 1.72 REMARK 500 O SER A 106 O HOH A 1006 1.75 REMARK 500 OE1 GLN B 47 OD1 ASP B 53 1.79 REMARK 500 O ASP B 119 O HOH B 1087 1.87 REMARK 500 O HOH A 1058 O HOH A 1103 1.87 REMARK 500 O LYS A 13 O HOH A 1068 1.89 REMARK 500 O HOH B 1072 O HOH B 1104 1.92 REMARK 500 O GLN B 47 N GLN B 49 1.96 REMARK 500 O HOH B 1085 O HOH B 1103 1.99 REMARK 500 O HOH B 1093 O HOH B 1107 2.01 REMARK 500 OG SER A 67 O HOH A 1082 2.01 REMARK 500 O HOH A 1075 O HOH A 1092 2.01 REMARK 500 O HOH B 1058 O HOH B 1078 2.04 REMARK 500 O HOH A 1024 O HOH A 1036 2.05 REMARK 500 O HOH B 1087 O HOH B 1108 2.06 REMARK 500 OG SER B 106 O HOH B 1102 2.06 REMARK 500 O HOH B 1012 O HOH B 1094 2.08 REMARK 500 CB LEU B 8 O HOH B 1046 2.09 REMARK 500 O ASP A 119 O HOH A 1011 2.10 REMARK 500 O HOH B 1002 O HOH B 1007 2.12 REMARK 500 O HOH B 1060 O HOH B 1091 2.13 REMARK 500 O GLN B 47 OE1 GLN B 49 2.16 REMARK 500 O HOH A 1038 O HOH A 1085 2.17 REMARK 500 O HOH B 1052 O HOH B 1076 2.18 REMARK 500 O ASN A 87 O HOH A 1094 2.19 REMARK 500 O CYS B 65 OG SER B 72 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 48 O HOH A 1046 1545 1.20 REMARK 500 NH1 ARG B 46 O HOH B 1063 1545 1.71 REMARK 500 O HOH A 1017 O HOH B 1030 1565 1.92 REMARK 500 O HOH A 1028 O HOH A 1051 1545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 22 C GLY A 22 O -0.137 REMARK 500 TYR A 34 CD1 TYR A 34 CE1 -0.106 REMARK 500 GLU A 35 CD GLU A 35 OE2 -0.081 REMARK 500 TYR A 54 C TYR A 54 O -0.126 REMARK 500 PHE A 57 CD1 PHE A 57 CE1 -0.142 REMARK 500 SER A 61 CB SER A 61 OG -0.081 REMARK 500 CYS A 65 CB CYS A 65 SG -0.136 REMARK 500 CYS A 80 CB CYS A 80 SG -0.199 REMARK 500 VAL A 99 CB VAL A 99 CG2 -0.212 REMARK 500 TYR A 123 CE2 TYR A 123 CD2 -0.164 REMARK 500 LEU A 129 C LEU A 129 OXT -0.223 REMARK 500 LYS B 1 CB LYS B 1 CG -0.201 REMARK 500 LYS B 13 CE LYS B 13 NZ -0.173 REMARK 500 PHE B 20 C PHE B 20 O -0.122 REMARK 500 GLY B 22 C GLY B 22 O -0.099 REMARK 500 TYR B 23 CD1 TYR B 23 CE1 -0.121 REMARK 500 GLU B 33 CD GLU B 33 OE1 -0.077 REMARK 500 TYR B 34 CD1 TYR B 34 CE1 -0.110 REMARK 500 GLU B 35 CD GLU B 35 OE1 -0.093 REMARK 500 GLU B 35 CD GLU B 35 OE2 -0.093 REMARK 500 GLU B 35 C GLU B 35 O -0.128 REMARK 500 TRP B 63 CB TRP B 63 CG -0.112 REMARK 500 CYS B 65 CB CYS B 65 SG -0.105 REMARK 500 PHE B 83 CD1 PHE B 83 CE1 -0.131 REMARK 500 CYS B 94 CB CYS B 94 SG -0.118 REMARK 500 ALA B 95 C ALA B 95 O -0.130 REMARK 500 LYS B 96 C LYS B 96 O -0.114 REMARK 500 VAL B 109 CB VAL B 109 CG1 -0.157 REMARK 500 LEU B 129 C LEU B 129 OXT -0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 GLN A 49 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 CYS A 115 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP A 119 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 CYS A 127 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 46 CG - CD - NE ANGL. DEV. = 13.3 DEGREES REMARK 500 GLN B 49 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 LYS B 62 CD - CE - NZ ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP B 85 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 ASP B 90 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU B 129 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 20 104.01 -58.56 REMARK 500 GLN A 47 64.03 -102.85 REMARK 500 SER A 48 -59.69 -127.99 REMARK 500 GLN A 49 -157.87 -177.30 REMARK 500 SER A 67 -136.18 -100.47 REMARK 500 GLN A 68 -79.48 -120.24 REMARK 500 HIS A 70 94.09 -59.45 REMARK 500 ASN A 74 56.02 39.58 REMARK 500 ASP A 101 161.07 -46.88 REMARK 500 CYS A 115 -34.54 -134.95 REMARK 500 ALA A 125 -45.46 -28.40 REMARK 500 PHE B 20 110.00 -56.57 REMARK 500 PHE B 38 24.98 47.02 REMARK 500 GLN B 47 124.98 -171.96 REMARK 500 SER B 48 -31.36 34.11 REMARK 500 GLN B 49 43.40 -162.62 REMARK 500 SER B 51 -151.41 -139.78 REMARK 500 SER B 72 141.59 -173.64 REMARK 500 CYS B 80 -35.18 -24.71 REMARK 500 ASP B 85 -167.92 -128.01 REMARK 500 VAL B 98 -74.44 -37.25 REMARK 500 CYS B 115 -42.38 -137.16 REMARK 500 LYS B 116 34.44 -67.68 REMARK 500 TYR B 123 -39.17 -38.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1001 DBREF 2Z2E A 1 129 UNP P81708 LYSC1_CANFA 1 129 DBREF 2Z2E B 1 129 UNP P81708 LYSC1_CANFA 1 129 SEQADV 2Z2E GLN A 44 UNP P81708 ASN 44 ENGINEERED MUTATION SEQADV 2Z2E GLN A 47 UNP P81708 ASN 47 ENGINEERED MUTATION SEQADV 2Z2E GLN A 49 UNP P81708 ASN 49 ENGINEERED MUTATION SEQADV 2Z2E GLN A 68 UNP P81708 ASN 68 ENGINEERED MUTATION SEQADV 2Z2E GLN A 103 UNP P81708 ASN 103 ENGINEERED MUTATION SEQADV 2Z2E GLN B 44 UNP P81708 ASN 44 ENGINEERED MUTATION SEQADV 2Z2E GLN B 47 UNP P81708 ASN 47 ENGINEERED MUTATION SEQADV 2Z2E GLN B 49 UNP P81708 ASN 49 ENGINEERED MUTATION SEQADV 2Z2E GLN B 68 UNP P81708 ASN 68 ENGINEERED MUTATION SEQADV 2Z2E GLN B 103 UNP P81708 ASN 103 ENGINEERED MUTATION SEQRES 1 A 129 LYS ILE PHE SER LYS CYS GLU LEU ALA ARG LYS LEU LYS SEQRES 2 A 129 SER MET GLY MET ASP GLY PHE HIS GLY TYR SER LEU ALA SEQRES 3 A 129 ASN TRP VAL CYS MET ALA GLU TYR GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA PHE GLN GLY ARG GLN SER GLN GLY SER SER SEQRES 5 A 129 ASP TYR GLY ILE PHE GLN LEU ASN SER LYS TRP TRP CYS SEQRES 6 A 129 LYS SER GLN SER HIS SER SER ALA ASN ALA CYS ASN ILE SEQRES 7 A 129 MET CYS SER LYS PHE LEU ASP ASP ASN ILE ASP ASP ASP SEQRES 8 A 129 ILE ALA CYS ALA LYS ARG VAL VAL LYS ASP PRO GLN GLY SEQRES 9 A 129 MET SER ALA TRP VAL ALA TRP VAL LYS HIS CYS LYS GLY SEQRES 10 A 129 LYS ASP LEU SER LYS TYR LEU ALA SER CYS ASN LEU SEQRES 1 B 129 LYS ILE PHE SER LYS CYS GLU LEU ALA ARG LYS LEU LYS SEQRES 2 B 129 SER MET GLY MET ASP GLY PHE HIS GLY TYR SER LEU ALA SEQRES 3 B 129 ASN TRP VAL CYS MET ALA GLU TYR GLU SER ASN PHE ASN SEQRES 4 B 129 THR GLN ALA PHE GLN GLY ARG GLN SER GLN GLY SER SER SEQRES 5 B 129 ASP TYR GLY ILE PHE GLN LEU ASN SER LYS TRP TRP CYS SEQRES 6 B 129 LYS SER GLN SER HIS SER SER ALA ASN ALA CYS ASN ILE SEQRES 7 B 129 MET CYS SER LYS PHE LEU ASP ASP ASN ILE ASP ASP ASP SEQRES 8 B 129 ILE ALA CYS ALA LYS ARG VAL VAL LYS ASP PRO GLN GLY SEQRES 9 B 129 MET SER ALA TRP VAL ALA TRP VAL LYS HIS CYS LYS GLY SEQRES 10 B 129 LYS ASP LEU SER LYS TYR LEU ALA SER CYS ASN LEU HET SO4 A1002 5 HET SO4 B1001 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *215(H2 O) HELIX 1 1 SER A 4 MET A 15 1 12 HELIX 2 2 GLY A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 MET A 79 LEU A 84 5 6 HELIX 5 5 ILE A 88 ASP A 101 1 14 HELIX 6 6 GLN A 103 ALA A 107 5 5 HELIX 7 7 TRP A 108 CYS A 115 1 8 HELIX 8 8 SER B 4 MET B 15 1 12 HELIX 9 9 GLY B 19 TYR B 23 5 5 HELIX 10 10 SER B 24 ASN B 37 1 14 HELIX 11 11 MET B 79 ASP B 85 5 7 HELIX 12 12 ILE B 88 LYS B 100 1 13 HELIX 13 13 GLN B 103 ALA B 107 5 5 HELIX 14 14 TRP B 108 CYS B 115 1 8 SHEET 1 A 3 PHE A 43 GLY A 45 0 SHEET 2 A 3 SER A 52 TYR A 54 -1 O ASP A 53 N GLN A 44 SHEET 3 A 3 LEU A 59 ASN A 60 -1 O LEU A 59 N TYR A 54 SHEET 1 B 3 PHE B 43 GLN B 44 0 SHEET 2 B 3 ASP B 53 TYR B 54 -1 O ASP B 53 N GLN B 44 SHEET 3 B 3 LEU B 59 ASN B 60 -1 O LEU B 59 N TYR B 54 SSBOND 1 CYS A 6 CYS A 127 1555 1555 1.91 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.21 SSBOND 3 CYS A 65 CYS A 80 1555 1555 2.11 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.19 SSBOND 5 CYS B 6 CYS B 127 1555 1555 1.96 SSBOND 6 CYS B 30 CYS B 115 1555 1555 1.96 SSBOND 7 CYS B 65 CYS B 80 1555 1555 1.83 SSBOND 8 CYS B 76 CYS B 94 1555 1555 2.23 SITE 1 AC1 6 CYS A 6 ARG A 10 HIS A 21 LYS A 100 SITE 2 AC1 6 ASN A 128 HOH A1008 SITE 1 AC2 5 PHE B 20 LYS B 100 LYS B 113 HIS B 114 SITE 2 AC2 5 HOH B1024 CRYST1 31.216 31.216 198.307 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032035 0.018495 0.000000 0.00000 SCALE2 0.000000 0.036991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005043 0.00000