HEADER HYDROLASE 29-MAY-07 2Z2X TITLE CRYSTAL STRUCTURE OF MATURE FORM OF TK-SUBTILISIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TK-SUBTILISIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.62; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS SUBTILISIN, THERMOCOCCUS KODAKARAENSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.TANAKA,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA REVDAT 5 15-NOV-23 2Z2X 1 REMARK LINK REVDAT 4 01-NOV-23 2Z2X 1 REMARK REVDAT 3 13-JUL-11 2Z2X 1 VERSN REVDAT 2 24-FEB-09 2Z2X 1 VERSN REVDAT 1 04-DEC-07 2Z2X 0 JRNL AUTH S.TANAKA,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA JRNL TITL FOUR NEW CRYSTAL STRUCTURES OF TK-SUBTILISIN IN JRNL TITL 2 UNAUTOPROCESSED, AUTOPROCESSED AND MATURE FORMS: INSIGHT JRNL TITL 3 INTO STRUCTURAL CHANGES DURING MATURATION JRNL REF J.MOL.BIOL. V. 372 1055 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17706669 JRNL DOI 10.1016/J.JMB.2007.07.027 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1912 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1400 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.1900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.115 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2368 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2123 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3244 ; 1.676 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4934 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 5.008 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;16.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2711 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 429 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 583 ; 0.281 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2181 ; 0.209 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 253 ; 0.177 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 35 ; 0.112 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.223 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.171 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.272 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1571 ; 0.958 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2521 ; 1.601 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 797 ; 2.756 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 723 ; 4.278 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29017 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2E1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE, 0.2M REMARK 280 AMMONIUM SULFATE, 25% (W/V) PEG 4000, PH 4.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.02750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.47900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.02750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.47900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1113 O HOH A 1207 1.84 REMARK 500 O HOH A 1130 O HOH A 1306 2.14 REMARK 500 O HOH A 1031 O HOH A 1161 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1214 O HOH A 1303 3654 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 233 SD MET A 233 CE -0.607 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 241 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 MIS A 324 CA - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP A 356 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 105 33.59 -76.51 REMARK 500 ASP A 115 -151.97 -160.98 REMARK 500 ASN A 151 -53.24 -121.07 REMARK 500 ALA A 162 15.33 -141.76 REMARK 500 ASN A 166 -149.31 -153.08 REMARK 500 VAL A 170 -164.89 -125.14 REMARK 500 ILE A 219 -79.11 -118.84 REMARK 500 SER A 316 -162.16 -122.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1276 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 84 OE1 REMARK 620 2 ASP A 124 OD1 153.2 REMARK 620 3 ASP A 124 OD2 154.7 51.9 REMARK 620 4 LEU A 164 O 80.5 91.2 108.7 REMARK 620 5 ASN A 166 OD1 74.9 79.8 126.9 90.8 REMARK 620 6 ILE A 168 O 87.5 96.5 85.0 166.1 79.2 REMARK 620 7 VAL A 170 O 82.5 122.6 75.0 86.2 157.4 99.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1006 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 108 O REMARK 620 2 GLN A 110 OE1 86.1 REMARK 620 3 ALA A 227 O 154.3 80.0 REMARK 620 4 GLU A 229 OE1 85.3 137.0 90.1 REMARK 620 5 GLU A 229 OE2 73.3 84.9 83.9 52.3 REMARK 620 6 HOH A1266 O 119.8 141.1 83.6 77.6 128.1 REMARK 620 7 HOH A1267 O 81.5 81.8 117.3 137.8 152.3 74.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1007 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 119 OD1 REMARK 620 2 ASP A 119 OD2 48.6 REMARK 620 3 ASP A 121 OD1 118.4 77.0 REMARK 620 4 ASP A 314 OD1 83.5 120.3 157.8 REMARK 620 5 ASP A 315 OD1 77.0 109.1 100.9 86.9 REMARK 620 6 HOH A1017 O 160.4 151.0 77.9 81.3 89.8 REMARK 620 7 HOH A1270 O 105.1 78.4 86.4 84.1 170.4 85.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 205 O REMARK 620 2 ASP A 208 OD1 92.9 REMARK 620 3 VAL A 210 O 91.8 87.8 REMARK 620 4 ASP A 226 OD2 90.4 92.4 177.8 REMARK 620 5 HOH A1268 O 89.9 168.8 81.2 98.5 REMARK 620 6 HOH A1271 O 175.2 85.0 92.3 85.5 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 212 OD1 REMARK 620 2 ASP A 214 OD1 83.5 REMARK 620 3 ASP A 216 OD1 89.5 81.2 REMARK 620 4 ILE A 218 O 93.6 170.2 89.4 REMARK 620 5 ASP A 222 OD2 170.3 88.6 83.8 93.3 REMARK 620 6 ASP A 225 OD2 94.5 100.1 176.0 89.5 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD2 REMARK 620 2 ASP A 216 OD2 87.2 REMARK 620 3 ASP A 222 OD1 116.5 113.6 REMARK 620 4 ASP A 222 OD2 84.8 76.8 48.6 REMARK 620 5 ASP A 224 OD2 86.4 166.4 80.0 114.5 REMARK 620 6 HOH A1272 O 164.9 86.6 78.5 107.0 96.7 REMARK 620 7 HOH A1273 O 87.4 86.0 148.6 161.4 81.8 78.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 OD1 REMARK 620 2 LEU A 373 O 87.8 REMARK 620 3 PRO A 375 O 99.3 94.5 REMARK 620 4 GLY A 377 O 91.1 177.8 87.5 REMARK 620 5 ASP A 379 OD1 158.6 82.0 100.3 98.4 REMARK 620 6 HOH A1269 O 78.5 88.2 176.4 89.7 82.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z2Y RELATED DB: PDB REMARK 900 AUTOPROCESSED FORM OF TK-SUBTILISIN REMARK 900 RELATED ID: 2Z2Z RELATED DB: PDB REMARK 900 UNAUTOPROCESSED FORM OF TK-SUBTILISIN SOAKED BY 10MM CACL2 REMARK 900 RELATED ID: 2Z30 RELATED DB: PDB REMARK 900 COMPLEX FORM BETWEEN MAT-TK-SUBTILISIN AND TK-PROPEPTIDE DBREF 2Z2X A 81 398 UNP P58502 TKSU_PYRKO 105 422 SEQRES 1 A 318 GLN PRO ALA GLN THR ILE PRO TRP GLY ILE GLU ARG VAL SEQRES 2 A 318 LYS ALA PRO SER VAL TRP SER ILE THR ASP GLY SER VAL SEQRES 3 A 318 SER VAL ILE GLN VAL ALA VAL LEU ASP THR GLY VAL ASP SEQRES 4 A 318 TYR ASP HIS PRO ASP LEU ALA ALA ASN ILE ALA TRP CYS SEQRES 5 A 318 VAL SER THR LEU ARG GLY LYS VAL SER THR LYS LEU ARG SEQRES 6 A 318 ASP CYS ALA ASP GLN ASN GLY HIS GLY THR HIS VAL ILE SEQRES 7 A 318 GLY THR ILE ALA ALA LEU ASN ASN ASP ILE GLY VAL VAL SEQRES 8 A 318 GLY VAL ALA PRO GLY VAL GLN ILE TYR SER VAL ARG VAL SEQRES 9 A 318 LEU ASP ALA ARG GLY SER GLY SER TYR SER ASP ILE ALA SEQRES 10 A 318 ILE GLY ILE GLU GLN ALA ILE LEU GLY PRO ASP GLY VAL SEQRES 11 A 318 ALA ASP LYS ASP GLY ASP GLY ILE ILE ALA GLY ASP PRO SEQRES 12 A 318 ASP ASP ASP ALA ALA GLU VAL ILE SER MET SER LEU GLY SEQRES 13 A 318 GLY PRO ALA ASP ASP SER TYR LEU TYR ASP MET ILE ILE SEQRES 14 A 318 GLN ALA TYR ASN ALA GLY ILE VAL ILE VAL ALA ALA SER SEQRES 15 A 318 GLY ASN GLU GLY ALA PRO SER PRO SER TYR PRO ALA ALA SEQRES 16 A 318 TYR PRO GLU VAL ILE ALA VAL GLY ALA ILE ASP SER ASN SEQRES 17 A 318 ASP ASN ILE ALA SER PHE SER ASN ARG GLN PRO GLU VAL SEQRES 18 A 318 SER ALA PRO GLY VAL ASP ILE LEU SER THR TYR PRO ASP SEQRES 19 A 318 ASP SER TYR GLU THR LEU MET GLY THR MIS MET ALA THR SEQRES 20 A 318 PRO HIS VAL SER GLY VAL VAL ALA LEU ILE GLN ALA ALA SEQRES 21 A 318 TYR TYR GLN LYS TYR GLY LYS ILE LEU PRO VAL GLY THR SEQRES 22 A 318 PHE ASP ASP ILE SER LYS ASN THR VAL ARG GLY ILE LEU SEQRES 23 A 318 HIS ILE THR ALA ASP ASP LEU GLY PRO THR GLY TRP ASP SEQRES 24 A 318 ALA ASP TYR GLY TYR GLY VAL VAL ARG ALA ALA LEU ALA SEQRES 25 A 318 VAL GLN ALA ALA LEU GLY MODRES 2Z2X MIS A 324 SER MONOISOPROPYLPHOSPHORYLSERINE HET MIS A 324 13 HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET CA A1006 1 HET CA A1007 1 HETNAM MIS MONOISOPROPYLPHOSPHORYLSERINE HETNAM CA CALCIUM ION FORMUL 1 MIS C6 H14 N O6 P FORMUL 2 CA 7(CA 2+) FORMUL 9 HOH *299(H2 O) HELIX 1 1 PRO A 87 VAL A 93 1 7 HELIX 2 2 ALA A 95 TRP A 99 5 5 HELIX 3 3 LEU A 125 ALA A 127 5 3 HELIX 4 4 LEU A 136 LYS A 139 5 4 HELIX 5 5 LYS A 143 ALA A 148 1 6 HELIX 6 6 GLY A 152 ALA A 163 1 12 HELIX 7 7 SER A 192 GLY A 206 1 15 HELIX 8 8 ASP A 241 ALA A 254 1 14 HELIX 9 9 GLY A 322 GLY A 346 1 25 HELIX 10 10 THR A 361 ALA A 370 1 10 HELIX 11 11 ARG A 388 GLY A 398 1 11 SHEET 1 A 7 ILE A 129 SER A 134 0 SHEET 2 A 7 GLN A 178 ARG A 183 1 O SER A 181 N TRP A 131 SHEET 3 A 7 GLN A 110 ASP A 115 1 N VAL A 113 O TYR A 180 SHEET 4 A 7 VAL A 230 MET A 233 1 O VAL A 230 N ALA A 112 SHEET 5 A 7 VAL A 257 ALA A 261 1 O VAL A 259 N ILE A 231 SHEET 6 A 7 VAL A 279 ILE A 285 1 O ILE A 280 N ILE A 258 SHEET 7 A 7 VAL A 301 PRO A 304 1 O VAL A 301 N GLY A 283 SHEET 1 B 2 ILE A 308 TYR A 312 0 SHEET 2 B 2 SER A 316 LEU A 320 -1 O SER A 316 N TYR A 312 SSBOND 1 CYS A 132 CYS A 147 1555 1555 2.05 LINK C THR A 323 N MIS A 324 1555 1555 1.40 LINK C MIS A 324 N MET A 325 1555 1555 1.29 LINK OE1 GLN A 84 CA CA A1002 1555 1555 2.38 LINK O VAL A 108 CA CA A1006 1555 1555 2.28 LINK OE1 GLN A 110 CA CA A1006 1555 1555 2.33 LINK OD1 ASP A 119 CA CA A1007 1555 1555 2.86 LINK OD2 ASP A 119 CA CA A1007 1555 1555 2.31 LINK OD1 ASP A 121 CA CA A1007 1555 1555 2.25 LINK OD1 ASP A 124 CA CA A1002 1555 1555 2.44 LINK OD2 ASP A 124 CA CA A1002 1555 1555 2.54 LINK O LEU A 164 CA CA A1002 1555 1555 2.30 LINK OD1 ASN A 166 CA CA A1002 1555 1555 2.46 LINK O ILE A 168 CA CA A1002 1555 1555 2.33 LINK O VAL A 170 CA CA A1002 1555 1555 2.27 LINK O LEU A 205 CA CA A1005 1555 1555 2.25 LINK OD1 ASP A 208 CA CA A1005 1555 1555 2.29 LINK O VAL A 210 CA CA A1005 1555 1555 2.29 LINK OD1 ASP A 212 CA CA A1004 1555 1555 2.33 LINK OD2 ASP A 214 CA CA A1003 1555 1555 2.30 LINK OD1 ASP A 214 CA CA A1004 1555 1555 2.34 LINK OD2 ASP A 216 CA CA A1003 1555 1555 2.36 LINK OD1 ASP A 216 CA CA A1004 1555 1555 2.40 LINK O ILE A 218 CA CA A1004 1555 1555 2.32 LINK OD1 ASP A 222 CA CA A1003 1555 1555 2.52 LINK OD2 ASP A 222 CA CA A1003 1555 1555 2.62 LINK OD2 ASP A 222 CA CA A1004 1555 1555 2.32 LINK OD2 ASP A 224 CA CA A1003 1555 1555 2.40 LINK OD2 ASP A 225 CA CA A1004 1555 1555 2.24 LINK OD2 ASP A 226 CA CA A1005 1555 1555 2.19 LINK O ALA A 227 CA CA A1006 1555 1555 2.39 LINK OE1 GLU A 229 CA CA A1006 1555 1555 2.42 LINK OE2 GLU A 229 CA CA A1006 1555 1555 2.53 LINK OD1 ASP A 314 CA CA A1007 1555 1555 2.41 LINK OD1 ASP A 315 CA CA A1007 1555 1555 2.37 LINK OD1 ASP A 372 CA CA A1001 1555 1555 2.24 LINK O LEU A 373 CA CA A1001 1555 1555 2.31 LINK O PRO A 375 CA CA A1001 1555 1555 2.24 LINK O GLY A 377 CA CA A1001 1555 1555 2.31 LINK OD1 ASP A 379 CA CA A1001 1555 1555 2.46 LINK CA CA A1001 O HOH A1269 1555 1555 2.32 LINK CA CA A1003 O HOH A1272 1555 1555 2.36 LINK CA CA A1003 O HOH A1273 1555 1555 2.41 LINK CA CA A1005 O HOH A1268 1555 1555 2.43 LINK CA CA A1005 O HOH A1271 1555 1555 2.34 LINK CA CA A1006 O HOH A1266 1555 1555 2.57 LINK CA CA A1006 O HOH A1267 1555 1555 2.41 LINK CA CA A1007 O HOH A1017 1555 1555 2.37 LINK CA CA A1007 O HOH A1270 1555 1555 2.53 CISPEP 1 TYR A 272 PRO A 273 0 5.28 CISPEP 2 PRO A 313 ASP A 314 0 -4.17 SITE 1 AC1 6 ASP A 372 LEU A 373 PRO A 375 GLY A 377 SITE 2 AC1 6 ASP A 379 HOH A1269 SITE 1 AC2 6 GLN A 84 ASP A 124 LEU A 164 ASN A 166 SITE 2 AC2 6 ILE A 168 VAL A 170 SITE 1 AC3 6 ASP A 214 ASP A 216 ASP A 222 ASP A 224 SITE 2 AC3 6 HOH A1272 HOH A1273 SITE 1 AC4 6 ASP A 212 ASP A 214 ASP A 216 ILE A 218 SITE 2 AC4 6 ASP A 222 ASP A 225 SITE 1 AC5 6 LEU A 205 ASP A 208 VAL A 210 ASP A 226 SITE 2 AC5 6 HOH A1268 HOH A1271 SITE 1 AC6 6 VAL A 108 GLN A 110 ALA A 227 GLU A 229 SITE 2 AC6 6 HOH A1266 HOH A1267 SITE 1 AC7 6 ASP A 119 ASP A 121 ASP A 314 ASP A 315 SITE 2 AC7 6 HOH A1017 HOH A1270 CRYST1 46.055 60.958 91.910 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010880 0.00000