HEADER HYDROLASE 29-MAY-07 2Z2Y TITLE CRYSTAL STRUCTURE OF AUTOPROCESSED FORM OF TK-SUBTILISIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TK-SUBTILISIN; COMPND 3 CHAIN: A, C; COMPND 4 EC: 3.4.21.62; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TK-SUBTILISIN; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: PROPEPTIDE DOMAIN, UNP RESIDUES 29-93; COMPND 11 EC: 3.4.21.62; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 12 ORGANISM_TAXID: 69014; SOURCE 13 STRAIN: KOD1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS SUBTILISIN, THERMOCOCCUS KODAKARAENSIS, AUTOPROCESSED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.TANAKA,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA REVDAT 5 01-NOV-23 2Z2Y 1 REMARK REVDAT 4 10-NOV-21 2Z2Y 1 REMARK SEQADV REVDAT 3 13-JUL-11 2Z2Y 1 VERSN REVDAT 2 24-FEB-09 2Z2Y 1 VERSN REVDAT 1 04-DEC-07 2Z2Y 0 JRNL AUTH S.TANAKA,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA JRNL TITL FOUR NEW CRYSTAL STRUCTURES OF TK-SUBTILISIN IN JRNL TITL 2 UNAUTOPROCESSED, AUTOPROCESSED AND MATURE FORMS: INSIGHT JRNL TITL 3 INTO STRUCTURAL CHANGES DURING MATURATION JRNL REF J.MOL.BIOL. V. 372 1055 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17706669 JRNL DOI 10.1016/J.JMB.2007.07.027 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 60274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3226 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3708 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 628 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5746 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7864 ; 1.467 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 762 ; 6.177 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;38.030 ;25.446 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;15.013 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.272 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 920 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4392 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3048 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4007 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 519 ; 0.249 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 70 ; 0.222 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.344 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 3 ; 0.473 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3871 ; 0.851 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6116 ; 1.378 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2118 ; 2.288 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1748 ; 3.550 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65891 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2E1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, 0.2M ZINC REMARK 280 ACETATE, 2% (W/V) PEG 4000, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 224 O HOH C 2257 1.73 REMARK 500 OE2 GLU A 265 O HOH A 2236 1.96 REMARK 500 O HOH B 2028 O HOH B 2037 2.00 REMARK 500 O HOH A 2159 O HOH A 2299 2.00 REMARK 500 O HOH A 2005 O HOH A 2205 2.08 REMARK 500 OE1 GLU A 265 O HOH A 2233 2.13 REMARK 500 O HOH C 2195 O HOH D 2034 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 133 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 VAL C 133 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 ARG C 183 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG C 183 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 105 40.27 -77.99 REMARK 500 ASP A 115 -149.97 -161.82 REMARK 500 ALA A 162 20.37 -143.46 REMARK 500 ASN A 166 -152.16 -157.08 REMARK 500 VAL A 170 -163.12 -123.97 REMARK 500 ILE A 219 -73.24 -117.91 REMARK 500 SER A 234 54.33 -104.38 REMARK 500 SER A 316 -162.27 -125.00 REMARK 500 SER C 105 39.21 -78.38 REMARK 500 ASP C 115 -151.99 -159.58 REMARK 500 ALA C 162 18.63 -145.89 REMARK 500 ASN C 166 -147.34 -155.71 REMARK 500 VAL C 170 -164.44 -129.89 REMARK 500 ILE C 219 -75.26 -116.88 REMARK 500 SER C 234 57.92 -105.53 REMARK 500 SER C 242 -163.67 -121.83 REMARK 500 SER C 316 -162.01 -122.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z2X RELATED DB: PDB REMARK 900 MATURE TK-SUBTILISIN REMARK 900 RELATED ID: 2Z2Z RELATED DB: PDB REMARK 900 UNAUTOPROCESSED FORM OF TK-SUBTILISIN SOAKED BY 10MM CACL2 REMARK 900 RELATED ID: 2Z30 RELATED DB: PDB REMARK 900 COMPLEX FORM BETWEEN MAT-TK-SUBTILISIN AND TK-PROPEPTIDE DBREF 2Z2Y A 81 398 UNP P58502 TKSU_PYRKO 105 422 DBREF 2Z2Y B 5 69 UNP P58502 TKSU_PYRKO 29 93 DBREF 2Z2Y C 81 398 UNP P58502 TKSU_PYRKO 105 422 DBREF 2Z2Y D 5 69 UNP P58502 TKSU_PYRKO 29 93 SEQADV 2Z2Y CYS A 324 UNP P58502 SER 348 ENGINEERED MUTATION SEQADV 2Z2Y CYS C 324 UNP P58502 SER 348 ENGINEERED MUTATION SEQRES 1 A 318 GLN PRO ALA GLN THR ILE PRO TRP GLY ILE GLU ARG VAL SEQRES 2 A 318 LYS ALA PRO SER VAL TRP SER ILE THR ASP GLY SER VAL SEQRES 3 A 318 SER VAL ILE GLN VAL ALA VAL LEU ASP THR GLY VAL ASP SEQRES 4 A 318 TYR ASP HIS PRO ASP LEU ALA ALA ASN ILE ALA TRP CYS SEQRES 5 A 318 VAL SER THR LEU ARG GLY LYS VAL SER THR LYS LEU ARG SEQRES 6 A 318 ASP CYS ALA ASP GLN ASN GLY HIS GLY THR HIS VAL ILE SEQRES 7 A 318 GLY THR ILE ALA ALA LEU ASN ASN ASP ILE GLY VAL VAL SEQRES 8 A 318 GLY VAL ALA PRO GLY VAL GLN ILE TYR SER VAL ARG VAL SEQRES 9 A 318 LEU ASP ALA ARG GLY SER GLY SER TYR SER ASP ILE ALA SEQRES 10 A 318 ILE GLY ILE GLU GLN ALA ILE LEU GLY PRO ASP GLY VAL SEQRES 11 A 318 ALA ASP LYS ASP GLY ASP GLY ILE ILE ALA GLY ASP PRO SEQRES 12 A 318 ASP ASP ASP ALA ALA GLU VAL ILE SER MET SER LEU GLY SEQRES 13 A 318 GLY PRO ALA ASP ASP SER TYR LEU TYR ASP MET ILE ILE SEQRES 14 A 318 GLN ALA TYR ASN ALA GLY ILE VAL ILE VAL ALA ALA SER SEQRES 15 A 318 GLY ASN GLU GLY ALA PRO SER PRO SER TYR PRO ALA ALA SEQRES 16 A 318 TYR PRO GLU VAL ILE ALA VAL GLY ALA ILE ASP SER ASN SEQRES 17 A 318 ASP ASN ILE ALA SER PHE SER ASN ARG GLN PRO GLU VAL SEQRES 18 A 318 SER ALA PRO GLY VAL ASP ILE LEU SER THR TYR PRO ASP SEQRES 19 A 318 ASP SER TYR GLU THR LEU MET GLY THR CYS MET ALA THR SEQRES 20 A 318 PRO HIS VAL SER GLY VAL VAL ALA LEU ILE GLN ALA ALA SEQRES 21 A 318 TYR TYR GLN LYS TYR GLY LYS ILE LEU PRO VAL GLY THR SEQRES 22 A 318 PHE ASP ASP ILE SER LYS ASN THR VAL ARG GLY ILE LEU SEQRES 23 A 318 HIS ILE THR ALA ASP ASP LEU GLY PRO THR GLY TRP ASP SEQRES 24 A 318 ALA ASP TYR GLY TYR GLY VAL VAL ARG ALA ALA LEU ALA SEQRES 25 A 318 VAL GLN ALA ALA LEU GLY SEQRES 1 B 65 THR ILE ARG VAL ILE VAL SER VAL ASP LYS ALA LYS PHE SEQRES 2 B 65 ASN PRO HIS GLU VAL LEU GLY ILE GLY GLY HIS ILE VAL SEQRES 3 B 65 TYR GLN PHE LYS LEU ILE PRO ALA VAL VAL VAL ASP VAL SEQRES 4 B 65 PRO ALA ASN ALA VAL GLY LYS LEU LYS LYS MET PRO GLY SEQRES 5 B 65 VAL GLU LYS VAL GLU PHE ASP HIS GLN ALA VAL LEU LEU SEQRES 1 C 318 GLN PRO ALA GLN THR ILE PRO TRP GLY ILE GLU ARG VAL SEQRES 2 C 318 LYS ALA PRO SER VAL TRP SER ILE THR ASP GLY SER VAL SEQRES 3 C 318 SER VAL ILE GLN VAL ALA VAL LEU ASP THR GLY VAL ASP SEQRES 4 C 318 TYR ASP HIS PRO ASP LEU ALA ALA ASN ILE ALA TRP CYS SEQRES 5 C 318 VAL SER THR LEU ARG GLY LYS VAL SER THR LYS LEU ARG SEQRES 6 C 318 ASP CYS ALA ASP GLN ASN GLY HIS GLY THR HIS VAL ILE SEQRES 7 C 318 GLY THR ILE ALA ALA LEU ASN ASN ASP ILE GLY VAL VAL SEQRES 8 C 318 GLY VAL ALA PRO GLY VAL GLN ILE TYR SER VAL ARG VAL SEQRES 9 C 318 LEU ASP ALA ARG GLY SER GLY SER TYR SER ASP ILE ALA SEQRES 10 C 318 ILE GLY ILE GLU GLN ALA ILE LEU GLY PRO ASP GLY VAL SEQRES 11 C 318 ALA ASP LYS ASP GLY ASP GLY ILE ILE ALA GLY ASP PRO SEQRES 12 C 318 ASP ASP ASP ALA ALA GLU VAL ILE SER MET SER LEU GLY SEQRES 13 C 318 GLY PRO ALA ASP ASP SER TYR LEU TYR ASP MET ILE ILE SEQRES 14 C 318 GLN ALA TYR ASN ALA GLY ILE VAL ILE VAL ALA ALA SER SEQRES 15 C 318 GLY ASN GLU GLY ALA PRO SER PRO SER TYR PRO ALA ALA SEQRES 16 C 318 TYR PRO GLU VAL ILE ALA VAL GLY ALA ILE ASP SER ASN SEQRES 17 C 318 ASP ASN ILE ALA SER PHE SER ASN ARG GLN PRO GLU VAL SEQRES 18 C 318 SER ALA PRO GLY VAL ASP ILE LEU SER THR TYR PRO ASP SEQRES 19 C 318 ASP SER TYR GLU THR LEU MET GLY THR CYS MET ALA THR SEQRES 20 C 318 PRO HIS VAL SER GLY VAL VAL ALA LEU ILE GLN ALA ALA SEQRES 21 C 318 TYR TYR GLN LYS TYR GLY LYS ILE LEU PRO VAL GLY THR SEQRES 22 C 318 PHE ASP ASP ILE SER LYS ASN THR VAL ARG GLY ILE LEU SEQRES 23 C 318 HIS ILE THR ALA ASP ASP LEU GLY PRO THR GLY TRP ASP SEQRES 24 C 318 ALA ASP TYR GLY TYR GLY VAL VAL ARG ALA ALA LEU ALA SEQRES 25 C 318 VAL GLN ALA ALA LEU GLY SEQRES 1 D 65 THR ILE ARG VAL ILE VAL SER VAL ASP LYS ALA LYS PHE SEQRES 2 D 65 ASN PRO HIS GLU VAL LEU GLY ILE GLY GLY HIS ILE VAL SEQRES 3 D 65 TYR GLN PHE LYS LEU ILE PRO ALA VAL VAL VAL ASP VAL SEQRES 4 D 65 PRO ALA ASN ALA VAL GLY LYS LEU LYS LYS MET PRO GLY SEQRES 5 D 65 VAL GLU LYS VAL GLU PHE ASP HIS GLN ALA VAL LEU LEU HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET CA A1006 1 HET CA A1007 1 HET ZN A2001 1 HET ZN B2002 1 HET ZN B2006 1 HET CA C1008 1 HET CA C1009 1 HET CA C1010 1 HET CA C1011 1 HET CA C1012 1 HET CA C1013 1 HET CA C1014 1 HET ZN C2003 1 HET ZN D2004 1 HET ZN D2005 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 5 CA 14(CA 2+) FORMUL 12 ZN 6(ZN 2+) FORMUL 25 HOH *628(H2 O) HELIX 1 1 PRO A 87 VAL A 93 1 7 HELIX 2 2 ALA A 95 TRP A 99 5 5 HELIX 3 3 LEU A 125 ALA A 127 5 3 HELIX 4 4 LEU A 136 LYS A 139 5 4 HELIX 5 5 LYS A 143 ALA A 148 1 6 HELIX 6 6 GLY A 152 ALA A 163 1 12 HELIX 7 7 TYR A 193 GLY A 206 1 14 HELIX 8 8 SER A 242 ALA A 254 1 13 HELIX 9 9 GLY A 322 GLY A 346 1 25 HELIX 10 10 THR A 361 ALA A 370 1 10 HELIX 11 11 ARG A 388 GLY A 398 1 11 HELIX 12 12 ASN B 18 VAL B 22 5 5 HELIX 13 13 PRO B 44 ASN B 46 5 3 HELIX 14 14 ALA B 47 MET B 54 1 8 HELIX 15 15 PRO C 87 VAL C 93 1 7 HELIX 16 16 ALA C 95 TRP C 99 5 5 HELIX 17 17 LEU C 125 ALA C 127 5 3 HELIX 18 18 LEU C 136 LYS C 139 5 4 HELIX 19 19 LYS C 143 ALA C 148 1 6 HELIX 20 20 GLY C 152 ALA C 163 1 12 HELIX 21 21 TYR C 193 GLY C 206 1 14 HELIX 22 22 SER C 242 ALA C 254 1 13 HELIX 23 23 GLY C 322 GLY C 346 1 25 HELIX 24 24 THR C 361 ALA C 370 1 10 HELIX 25 25 ARG C 388 GLY C 398 1 11 HELIX 26 26 ASN D 18 GLY D 26 5 9 HELIX 27 27 PRO D 44 ASN D 46 5 3 HELIX 28 28 ALA D 47 LYS D 53 1 7 SHEET 1 A 7 ILE A 129 SER A 134 0 SHEET 2 A 7 GLN A 178 ARG A 183 1 O ARG A 183 N VAL A 133 SHEET 3 A 7 GLN A 110 ASP A 115 1 N VAL A 113 O TYR A 180 SHEET 4 A 7 VAL A 230 MET A 233 1 O VAL A 230 N ALA A 112 SHEET 5 A 7 VAL A 257 ALA A 261 1 O VAL A 257 N ILE A 231 SHEET 6 A 7 VAL A 279 ILE A 285 1 O ILE A 280 N ILE A 258 SHEET 7 A 7 VAL A 301 PRO A 304 1 O VAL A 301 N GLY A 283 SHEET 1 B 3 SER A 190 SER A 192 0 SHEET 2 B 3 GLN B 65 LEU B 68 -1 O ALA B 66 N GLY A 191 SHEET 3 B 3 LEU A 235 GLY A 236 -1 N GLY A 236 O VAL B 67 SHEET 1 C 2 ILE A 308 TYR A 312 0 SHEET 2 C 2 SER A 316 LEU A 320 -1 O LEU A 320 N ILE A 308 SHEET 1 D 4 HIS B 28 GLN B 32 0 SHEET 2 D 4 ALA B 38 VAL B 43 -1 O VAL B 40 N VAL B 30 SHEET 3 D 4 ILE B 6 VAL B 12 -1 N ILE B 6 O VAL B 43 SHEET 4 D 4 VAL B 57 PHE B 62 -1 O GLU B 58 N SER B 11 SHEET 1 E 7 ILE C 129 SER C 134 0 SHEET 2 E 7 GLN C 178 ARG C 183 1 O ARG C 183 N VAL C 133 SHEET 3 E 7 GLN C 110 ASP C 115 1 N VAL C 113 O TYR C 180 SHEET 4 E 7 VAL C 230 MET C 233 1 O VAL C 230 N ALA C 112 SHEET 5 E 7 VAL C 257 ALA C 261 1 O VAL C 259 N ILE C 231 SHEET 6 E 7 VAL C 279 ILE C 285 1 O ILE C 280 N ILE C 258 SHEET 7 E 7 VAL C 301 PRO C 304 1 O VAL C 301 N GLY C 283 SHEET 1 F 3 SER C 190 SER C 192 0 SHEET 2 F 3 GLN D 65 LEU D 68 -1 O ALA D 66 N GLY C 191 SHEET 3 F 3 LEU C 235 GLY C 236 -1 N GLY C 236 O VAL D 67 SHEET 1 G 2 ILE C 308 TYR C 312 0 SHEET 2 G 2 SER C 316 LEU C 320 -1 O LEU C 320 N ILE C 308 SHEET 1 H 4 HIS D 28 GLN D 32 0 SHEET 2 H 4 ALA D 38 VAL D 43 -1 O VAL D 40 N VAL D 30 SHEET 3 H 4 ILE D 6 VAL D 12 -1 N VAL D 8 O VAL D 41 SHEET 4 H 4 VAL D 57 PHE D 62 -1 O GLU D 61 N ILE D 9 SSBOND 1 CYS A 132 CYS A 147 1555 1555 2.13 SSBOND 2 CYS C 132 CYS C 147 1555 1555 2.11 CISPEP 1 TYR A 272 PRO A 273 0 4.73 CISPEP 2 PRO A 313 ASP A 314 0 -7.95 CISPEP 3 TYR C 272 PRO C 273 0 3.26 CISPEP 4 PRO C 313 ASP C 314 0 -8.62 SITE 1 AC1 6 GLN A 84 ASP A 124 LEU A 164 ASN A 166 SITE 2 AC1 6 ILE A 168 VAL A 170 SITE 1 AC2 6 LEU A 205 ASP A 208 VAL A 210 ASP A 226 SITE 2 AC2 6 HOH A2081 HOH A2130 SITE 1 AC3 7 ASP A 212 ASP A 214 ASP A 216 ILE A 218 SITE 2 AC3 7 ASP A 222 ASP A 225 CA A1004 SITE 1 AC4 5 ASP A 214 ASP A 216 ASP A 222 CA A1003 SITE 2 AC4 5 HIS D 20 SITE 1 AC5 6 VAL A 108 GLN A 110 ALA A 227 GLU A 229 SITE 2 AC5 6 HOH A2008 HOH A2195 SITE 1 AC6 6 ASP A 372 LEU A 373 PRO A 375 GLY A 377 SITE 2 AC6 6 ASP A 379 HOH A2036 SITE 1 AC7 6 ASP A 119 ASP A 121 ASP A 314 ASP A 315 SITE 2 AC7 6 HOH A2152 HOH A2221 SITE 1 AC8 6 GLN C 84 ASP C 124 LEU C 164 ASN C 166 SITE 2 AC8 6 ILE C 168 VAL C 170 SITE 1 AC9 6 LEU C 205 ASP C 208 VAL C 210 ASP C 226 SITE 2 AC9 6 HOH C2063 HOH C2085 SITE 1 BC1 7 ASP C 212 ASP C 214 ASP C 216 ILE C 218 SITE 2 BC1 7 ASP C 222 ASP C 225 CA C1011 SITE 1 BC2 5 HIS B 20 ASP C 214 ASP C 216 ASP C 222 SITE 2 BC2 5 CA C1010 SITE 1 BC3 6 VAL C 108 GLN C 110 ALA C 227 GLU C 229 SITE 2 BC3 6 HOH C2013 HOH C2180 SITE 1 BC4 6 ASP C 372 LEU C 373 PRO C 375 GLY C 377 SITE 2 BC4 6 ASP C 379 HOH C2028 SITE 1 BC5 6 ASP C 119 ASP C 121 ASP C 314 ASP C 315 SITE 2 BC5 6 HOH C2095 HOH C2193 SITE 1 BC6 4 HIS A 153 CYS A 324 LEU B 69 HOH B2027 SITE 1 BC7 4 GLU B 61 HIS B 64 HOH B2037 GLU C 318 SITE 1 BC8 4 HIS C 153 CYS C 324 LEU D 69 HOH D2034 SITE 1 BC9 4 GLU A 318 HOH A2005 GLU D 61 HIS D 64 SITE 1 CC1 3 HOH C2184 HIS D 28 ASP D 42 SITE 1 CC2 3 HOH A2257 HIS B 28 ASP B 42 CRYST1 53.908 65.365 70.385 87.59 67.44 69.76 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018550 -0.006841 -0.008469 0.00000 SCALE2 0.000000 0.016306 0.001716 0.00000 SCALE3 0.000000 0.000000 0.015470 0.00000