data_2Z33 # _entry.id 2Z33 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Z33 pdb_00002z33 10.2210/pdb2z33/pdb RCSB RCSB027459 ? ? WWPDB D_1000027459 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 4 'Structure model' 1 3 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_assembly 3 3 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Z33 _pdbx_database_status.recvd_initial_deposition_date 2007-05-31 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1qqi _pdbx_database_related.details 'The same protein in its DNA-free form.' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yamane, T.' 1 'Okamura, H.' 2 'Ikeguchi, M.' 3 'Nishimura, Y.' 4 'Kidera, A.' 5 # _citation.id primary _citation.title ;Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment. ; _citation.journal_abbrev Proteins _citation.journal_volume 71 _citation.page_first 1970 _citation.page_last 1983 _citation.year 2008 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18186481 _citation.pdbx_database_id_DOI 10.1002/prot.21874 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamane, T.' 1 ? primary 'Okamura, H.' 2 ? primary 'Ikeguchi, M.' 3 ? primary 'Nishimura, Y.' 4 ? primary 'Kidera, A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3'" 4872.190 1 ? ? ? ? 2 polymer syn "5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3'" 4921.229 1 ? ? ? ? 3 polymer man 'Phosphate regulon transcriptional regulatory protein phoB' 12173.898 1 ? ? 'residues 1-104' ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DC)(DT)(DG)(DT)(DC)(DA)(DT)(DA)(DA)(DA)(DT)(DC)(DT)(DG)(DT)' ACTGTCATAAATCTGT B ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DA)(DG)(DA)(DT)(DT)(DT)(DA)(DT)(DG)(DA)(DC)(DA)(DG)(DT)' ACAGATTTATGACAGT C ? 3 'polypeptide(L)' no no ;MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKA LEPGGHDRMVQTVRGTGYRFSTRF ; ;MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKA LEPGGHDRMVQTVRGTGYRFSTRF ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DT n 1 6 DC n 1 7 DA n 1 8 DT n 1 9 DA n 1 10 DA n 1 11 DA n 1 12 DT n 1 13 DC n 1 14 DT n 1 15 DG n 1 16 DT n 2 1 DA n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DT n 2 8 DT n 2 9 DA n 2 10 DT n 2 11 DG n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DG n 2 16 DT n 3 1 MET n 3 2 ALA n 3 3 VAL n 3 4 GLU n 3 5 GLU n 3 6 VAL n 3 7 ILE n 3 8 GLU n 3 9 MET n 3 10 GLN n 3 11 GLY n 3 12 LEU n 3 13 SER n 3 14 LEU n 3 15 ASP n 3 16 PRO n 3 17 THR n 3 18 SER n 3 19 HIS n 3 20 ARG n 3 21 VAL n 3 22 MET n 3 23 ALA n 3 24 GLY n 3 25 GLU n 3 26 GLU n 3 27 PRO n 3 28 LEU n 3 29 GLU n 3 30 MET n 3 31 GLY n 3 32 PRO n 3 33 THR n 3 34 GLU n 3 35 PHE n 3 36 LYS n 3 37 LEU n 3 38 LEU n 3 39 HIS n 3 40 PHE n 3 41 PHE n 3 42 MET n 3 43 THR n 3 44 HIS n 3 45 PRO n 3 46 GLU n 3 47 ARG n 3 48 VAL n 3 49 TYR n 3 50 SER n 3 51 ARG n 3 52 GLU n 3 53 GLN n 3 54 LEU n 3 55 LEU n 3 56 ASN n 3 57 HIS n 3 58 VAL n 3 59 TRP n 3 60 GLY n 3 61 THR n 3 62 ASN n 3 63 VAL n 3 64 TYR n 3 65 VAL n 3 66 GLU n 3 67 ASP n 3 68 ARG n 3 69 THR n 3 70 VAL n 3 71 ASP n 3 72 VAL n 3 73 HIS n 3 74 ILE n 3 75 ARG n 3 76 ARG n 3 77 LEU n 3 78 ARG n 3 79 LYS n 3 80 ALA n 3 81 LEU n 3 82 GLU n 3 83 PRO n 3 84 GLY n 3 85 GLY n 3 86 HIS n 3 87 ASP n 3 88 ARG n 3 89 MET n 3 90 VAL n 3 91 GLN n 3 92 THR n 3 93 VAL n 3 94 ARG n 3 95 GLY n 3 96 THR n 3 97 GLY n 3 98 TYR n 3 99 ARG n 3 100 PHE n 3 101 SER n 3 102 THR n 3 103 ARG n 3 104 PHE n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene phoB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PT7-7-CB _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A B . n A 1 2 DC 2 2 2 DC C B . n A 1 3 DT 3 3 3 DT T B . n A 1 4 DG 4 4 4 DG G B . n A 1 5 DT 5 5 5 DT T B . n A 1 6 DC 6 6 6 DC C B . n A 1 7 DA 7 7 7 DA A B . n A 1 8 DT 8 8 8 DT T B . n A 1 9 DA 9 9 9 DA A B . n A 1 10 DA 10 10 10 DA A B . n A 1 11 DA 11 11 11 DA A B . n A 1 12 DT 12 12 12 DT T B . n A 1 13 DC 13 13 13 DC C B . n A 1 14 DT 14 14 14 DT T B . n A 1 15 DG 15 15 15 DG G B . n A 1 16 DT 16 16 16 DT T B . n B 2 1 DA 1 1 1 DA A C . n B 2 2 DC 2 2 2 DC C C . n B 2 3 DA 3 3 3 DA A C . n B 2 4 DG 4 4 4 DG G C . n B 2 5 DA 5 5 5 DA A C . n B 2 6 DT 6 6 6 DT T C . n B 2 7 DT 7 7 7 DT T C . n B 2 8 DT 8 8 8 DT T C . n B 2 9 DA 9 9 9 DA A C . n B 2 10 DT 10 10 10 DT T C . n B 2 11 DG 11 11 11 DG G C . n B 2 12 DA 12 12 12 DA A C . n B 2 13 DC 13 13 13 DC C C . n B 2 14 DA 14 14 14 DA A C . n B 2 15 DG 15 15 15 DG G C . n B 2 16 DT 16 16 16 DT T C . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 ALA 2 2 2 ALA ALA A . n C 3 3 VAL 3 3 3 VAL VAL A . n C 3 4 GLU 4 4 4 GLU GLU A . n C 3 5 GLU 5 5 5 GLU GLU A . n C 3 6 VAL 6 6 6 VAL VAL A . n C 3 7 ILE 7 7 7 ILE ILE A . n C 3 8 GLU 8 8 8 GLU GLU A . n C 3 9 MET 9 9 9 MET MET A . n C 3 10 GLN 10 10 10 GLN GLN A . n C 3 11 GLY 11 11 11 GLY GLY A . n C 3 12 LEU 12 12 12 LEU LEU A . n C 3 13 SER 13 13 13 SER SER A . n C 3 14 LEU 14 14 14 LEU LEU A . n C 3 15 ASP 15 15 15 ASP ASP A . n C 3 16 PRO 16 16 16 PRO PRO A . n C 3 17 THR 17 17 17 THR THR A . n C 3 18 SER 18 18 18 SER SER A . n C 3 19 HIS 19 19 19 HIS HIS A . n C 3 20 ARG 20 20 20 ARG ARG A . n C 3 21 VAL 21 21 21 VAL VAL A . n C 3 22 MET 22 22 22 MET MET A . n C 3 23 ALA 23 23 23 ALA ALA A . n C 3 24 GLY 24 24 24 GLY GLY A . n C 3 25 GLU 25 25 25 GLU GLU A . n C 3 26 GLU 26 26 26 GLU GLU A . n C 3 27 PRO 27 27 27 PRO PRO A . n C 3 28 LEU 28 28 28 LEU LEU A . n C 3 29 GLU 29 29 29 GLU GLU A . n C 3 30 MET 30 30 30 MET MET A . n C 3 31 GLY 31 31 31 GLY GLY A . n C 3 32 PRO 32 32 32 PRO PRO A . n C 3 33 THR 33 33 33 THR THR A . n C 3 34 GLU 34 34 34 GLU GLU A . n C 3 35 PHE 35 35 35 PHE PHE A . n C 3 36 LYS 36 36 36 LYS LYS A . n C 3 37 LEU 37 37 37 LEU LEU A . n C 3 38 LEU 38 38 38 LEU LEU A . n C 3 39 HIS 39 39 39 HIS HIS A . n C 3 40 PHE 40 40 40 PHE PHE A . n C 3 41 PHE 41 41 41 PHE PHE A . n C 3 42 MET 42 42 42 MET MET A . n C 3 43 THR 43 43 43 THR THR A . n C 3 44 HIS 44 44 44 HIS HIS A . n C 3 45 PRO 45 45 45 PRO PRO A . n C 3 46 GLU 46 46 46 GLU GLU A . n C 3 47 ARG 47 47 47 ARG ARG A . n C 3 48 VAL 48 48 48 VAL VAL A . n C 3 49 TYR 49 49 49 TYR TYR A . n C 3 50 SER 50 50 50 SER SER A . n C 3 51 ARG 51 51 51 ARG ARG A . n C 3 52 GLU 52 52 52 GLU GLU A . n C 3 53 GLN 53 53 53 GLN GLN A . n C 3 54 LEU 54 54 54 LEU LEU A . n C 3 55 LEU 55 55 55 LEU LEU A . n C 3 56 ASN 56 56 56 ASN ASN A . n C 3 57 HIS 57 57 57 HIS HIS A . n C 3 58 VAL 58 58 58 VAL VAL A . n C 3 59 TRP 59 59 59 TRP TRP A . n C 3 60 GLY 60 60 60 GLY GLY A . n C 3 61 THR 61 61 61 THR THR A . n C 3 62 ASN 62 62 62 ASN ASN A . n C 3 63 VAL 63 63 63 VAL VAL A . n C 3 64 TYR 64 64 64 TYR TYR A . n C 3 65 VAL 65 65 65 VAL VAL A . n C 3 66 GLU 66 66 66 GLU GLU A . n C 3 67 ASP 67 67 67 ASP ASP A . n C 3 68 ARG 68 68 68 ARG ARG A . n C 3 69 THR 69 69 69 THR THR A . n C 3 70 VAL 70 70 70 VAL VAL A . n C 3 71 ASP 71 71 71 ASP ASP A . n C 3 72 VAL 72 72 72 VAL VAL A . n C 3 73 HIS 73 73 73 HIS HIS A . n C 3 74 ILE 74 74 74 ILE ILE A . n C 3 75 ARG 75 75 75 ARG ARG A . n C 3 76 ARG 76 76 76 ARG ARG A . n C 3 77 LEU 77 77 77 LEU LEU A . n C 3 78 ARG 78 78 78 ARG ARG A . n C 3 79 LYS 79 79 79 LYS LYS A . n C 3 80 ALA 80 80 80 ALA ALA A . n C 3 81 LEU 81 81 81 LEU LEU A . n C 3 82 GLU 82 82 82 GLU GLU A . n C 3 83 PRO 83 83 83 PRO PRO A . n C 3 84 GLY 84 84 84 GLY GLY A . n C 3 85 GLY 85 85 85 GLY GLY A . n C 3 86 HIS 86 86 86 HIS HIS A . n C 3 87 ASP 87 87 87 ASP ASP A . n C 3 88 ARG 88 88 88 ARG ARG A . n C 3 89 MET 89 89 89 MET MET A . n C 3 90 VAL 90 90 90 VAL VAL A . n C 3 91 GLN 91 91 91 GLN GLN A . n C 3 92 THR 92 92 92 THR THR A . n C 3 93 VAL 93 93 93 VAL VAL A . n C 3 94 ARG 94 94 94 ARG ARG A . n C 3 95 GLY 95 95 95 GLY GLY A . n C 3 96 THR 96 96 96 THR THR A . n C 3 97 GLY 97 97 97 GLY GLY A . n C 3 98 TYR 98 98 98 TYR TYR A . n C 3 99 ARG 99 99 99 ARG ARG A . n C 3 100 PHE 100 100 100 PHE PHE A . n C 3 101 SER 101 101 101 SER SER A . n C 3 102 THR 102 102 102 THR THR A . n C 3 103 ARG 103 103 103 ARG ARG A . n C 3 104 PHE 104 104 104 PHE PHE A . n # _cell.entry_id 2Z33 _cell.length_a 0.000 _cell.length_b 0.000 _cell.length_c 0.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z33 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2Z33 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2Z33 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2Z33 _struct.title 'Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z33 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'WINGED HELIX-TURN-HELIX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PHOB_ECOLI P0AFJ5 3 ;MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKA LEPGGHDRMVQTVRGTGYRFSTRF ; 126 ? 2 PDB 2Z33 2Z33 1 ? ? ? 3 PDB 2Z33 2Z33 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Z33 A 1 ? 104 ? P0AFJ5 126 ? 229 ? 1 104 2 2 2Z33 B 1 ? 16 ? 2Z33 1 ? 16 ? 1 16 3 3 2Z33 C 1 ? 16 ? 2Z33 1 ? 16 ? 1 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 31 ? HIS C 44 ? GLY A 31 HIS A 44 1 ? 14 HELX_P HELX_P2 2 ARG C 51 ? VAL C 58 ? ARG A 51 VAL A 58 1 ? 8 HELX_P HELX_P3 3 ASP C 67 ? GLU C 82 ? ASP A 67 GLU A 82 1 ? 16 HELX_P HELX_P4 4 HIS C 86 ? ARG C 88 ? HIS A 86 ARG A 88 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 16 N3 ? ? B DA 1 C DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 16 O4 ? ? B DA 1 C DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 15 N1 ? ? B DC 2 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 15 O6 ? ? B DC 2 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 15 N2 ? ? B DC 2 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 14 N1 ? ? B DT 3 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 14 N6 ? ? B DT 3 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 13 N3 ? ? B DG 4 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 13 O2 ? ? B DG 4 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 13 N4 ? ? B DG 4 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 12 N1 ? ? B DT 5 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 12 N6 ? ? B DT 5 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 6 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 6 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 6 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 10 N3 ? ? B DA 7 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 10 O4 ? ? B DA 7 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 8 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 8 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 9 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 9 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 10 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 10 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 11 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 11 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 12 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 12 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 13 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 13 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 13 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 14 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 14 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 15 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 15 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 15 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 1 N1 ? ? B DT 16 C DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 1 N6 ? ? B DT 16 C DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE C 7 ? MET C 9 ? ILE A 7 MET A 9 A 2 LEU C 12 ? ASP C 15 ? LEU A 12 ASP A 15 A 3 ARG C 20 ? ALA C 23 ? ARG A 20 ALA A 23 A 4 GLU C 26 ? LEU C 28 ? GLU A 26 LEU A 28 B 1 VAL C 48 ? SER C 50 ? VAL A 48 SER A 50 B 2 GLY C 97 ? PHE C 100 ? GLY A 97 PHE A 100 B 3 VAL C 90 ? VAL C 93 ? VAL A 90 VAL A 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE C 7 ? N ILE A 7 O LEU C 14 ? O LEU A 14 A 2 3 N SER C 13 ? N SER A 13 O MET C 22 ? O MET A 22 A 3 4 N ALA C 23 ? N ALA A 23 O GLU C 26 ? O GLU A 26 B 1 2 N TYR C 49 ? N TYR A 49 O TYR C 98 ? O TYR A 98 B 2 3 O GLY C 97 ? O GLY A 97 N VAL C 93 ? N VAL A 93 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 34 ? ? HD1 A HIS 73 ? ? 1.54 2 3 OP2 B DG 4 ? ? HE2 A HIS 73 ? ? 1.58 3 4 OE1 A GLU 34 ? ? HD1 A HIS 73 ? ? 1.56 4 5 OE2 A GLU 34 ? ? HD1 A HIS 73 ? ? 1.55 5 5 OP2 B DG 4 ? ? HE2 A HIS 73 ? ? 1.60 6 6 OP2 B DG 4 ? ? HE2 A HIS 73 ? ? 1.57 7 6 OE1 A GLU 34 ? ? HD1 A HIS 73 ? ? 1.57 8 7 OE2 A GLU 34 ? ? HD1 A HIS 73 ? ? 1.57 9 8 OE1 A GLU 34 ? ? HD1 A HIS 73 ? ? 1.55 10 8 OP2 B DG 4 ? ? HE2 A HIS 73 ? ? 1.60 11 9 OP2 B DG 4 ? ? HE2 A HIS 73 ? ? 1.58 12 10 OE2 A GLU 34 ? ? HD1 A HIS 73 ? ? 1.60 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" B DT 5 ? ? "C3'" B DT 5 ? ? 1.659 1.529 0.130 0.010 N 2 1 "C3'" B DT 5 ? ? "C2'" B DT 5 ? ? 1.240 1.516 -0.276 0.008 N 3 1 "O3'" B DT 5 ? ? "C3'" B DT 5 ? ? 1.529 1.435 0.094 0.013 N 4 1 "C1'" B DT 5 ? ? N1 B DT 5 ? ? 1.302 1.468 -0.166 0.014 N 5 1 N1 B DT 5 ? ? C2 B DT 5 ? ? 1.466 1.376 0.090 0.008 N 6 1 C2 B DT 5 ? ? N3 B DT 5 ? ? 1.525 1.373 0.152 0.008 N 7 1 N3 B DT 5 ? ? C4 B DT 5 ? ? 1.316 1.382 -0.066 0.008 N 8 1 C5 B DT 5 ? ? C6 B DT 5 ? ? 1.391 1.339 0.052 0.007 N 9 1 C6 B DT 5 ? ? N1 B DT 5 ? ? 1.421 1.378 0.043 0.007 N 10 1 C2 B DT 5 ? ? O2 B DT 5 ? ? 0.948 1.220 -0.272 0.008 N 11 1 C5 B DT 5 ? ? C7 B DT 5 ? ? 1.445 1.496 -0.051 0.006 N 12 1 N3 C DA 12 ? ? C4 C DA 12 ? ? 1.414 1.344 0.070 0.006 N 13 1 C5 C DA 12 ? ? C6 C DA 12 ? ? 1.470 1.406 0.064 0.009 N 14 1 C6 C DA 12 ? ? N1 C DA 12 ? ? 1.283 1.351 -0.068 0.007 N 15 1 N9 C DA 12 ? ? C4 C DA 12 ? ? 1.288 1.374 -0.086 0.006 N 16 1 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.375 1.252 0.123 0.011 N 17 1 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.368 1.252 0.116 0.011 N 18 2 N1 B DT 12 ? ? C2 B DT 12 ? ? 1.466 1.376 0.090 0.008 N 19 2 C2 B DT 12 ? ? N3 B DT 12 ? ? 1.487 1.373 0.114 0.008 N 20 2 N3 B DT 12 ? ? C4 B DT 12 ? ? 1.327 1.382 -0.055 0.008 N 21 2 C6 B DT 12 ? ? N1 B DT 12 ? ? 1.331 1.378 -0.047 0.007 N 22 2 C2 B DT 12 ? ? O2 B DT 12 ? ? 0.974 1.220 -0.246 0.008 N 23 2 CA A LEU 54 ? ? CB A LEU 54 ? ? 1.788 1.533 0.255 0.023 N 24 2 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.373 1.252 0.121 0.011 N 25 2 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.369 1.252 0.117 0.011 N 26 3 N1 C DT 8 ? ? C2 C DT 8 ? ? 1.311 1.376 -0.065 0.008 N 27 3 N3 C DT 8 ? ? C4 C DT 8 ? ? 1.313 1.382 -0.069 0.008 N 28 3 C6 C DT 8 ? ? N1 C DT 8 ? ? 1.435 1.378 0.057 0.007 N 29 3 C5 C DT 8 ? ? C7 C DT 8 ? ? 1.538 1.496 0.042 0.006 N 30 3 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.361 1.252 0.109 0.011 N 31 3 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.368 1.252 0.116 0.011 N 32 4 C2 B DT 14 ? ? N3 B DT 14 ? ? 1.428 1.373 0.055 0.008 N 33 4 N3 B DT 14 ? ? C4 B DT 14 ? ? 1.435 1.382 0.053 0.008 N 34 4 C5 B DT 14 ? ? C6 B DT 14 ? ? 1.285 1.339 -0.054 0.007 N 35 4 C2 B DT 14 ? ? O2 B DT 14 ? ? 1.074 1.220 -0.146 0.008 N 36 4 C4 B DT 14 ? ? O4 B DT 14 ? ? 1.131 1.228 -0.097 0.009 N 37 4 C5 B DT 14 ? ? C7 B DT 14 ? ? 1.540 1.496 0.044 0.006 N 38 4 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.375 1.252 0.123 0.011 N 39 4 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.366 1.252 0.114 0.011 N 40 5 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.371 1.252 0.119 0.011 N 41 5 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.368 1.252 0.116 0.011 N 42 6 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.370 1.252 0.118 0.011 N 43 6 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.361 1.252 0.109 0.011 N 44 7 N1 B DT 12 ? ? C2 B DT 12 ? ? 1.308 1.376 -0.068 0.008 N 45 7 C2 B DT 12 ? ? N3 B DT 12 ? ? 1.426 1.373 0.053 0.008 N 46 7 N3 B DT 12 ? ? C4 B DT 12 ? ? 1.666 1.382 0.284 0.008 N 47 7 C6 B DT 12 ? ? N1 B DT 12 ? ? 1.501 1.378 0.123 0.007 N 48 7 C2 B DT 12 ? ? O2 B DT 12 ? ? 1.148 1.220 -0.072 0.008 N 49 7 C4 B DT 12 ? ? O4 B DT 12 ? ? 0.916 1.228 -0.312 0.009 N 50 7 C5 B DT 12 ? ? C7 B DT 12 ? ? 1.636 1.496 0.140 0.006 N 51 7 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.380 1.252 0.128 0.011 N 52 7 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.368 1.252 0.116 0.011 N 53 8 N1 B DT 12 ? ? C2 B DT 12 ? ? 1.244 1.376 -0.132 0.008 N 54 8 C2 B DT 12 ? ? N3 B DT 12 ? ? 1.180 1.373 -0.193 0.008 N 55 8 N3 B DT 12 ? ? C4 B DT 12 ? ? 1.463 1.382 0.081 0.008 N 56 8 C5 B DT 12 ? ? C6 B DT 12 ? ? 1.284 1.339 -0.055 0.007 N 57 8 C6 B DT 12 ? ? N1 B DT 12 ? ? 1.453 1.378 0.075 0.007 N 58 8 C2 B DT 12 ? ? O2 B DT 12 ? ? 1.730 1.220 0.510 0.008 N 59 8 N1 B DT 14 ? ? C2 B DT 14 ? ? 1.457 1.376 0.081 0.008 N 60 8 C2 B DT 14 ? ? N3 B DT 14 ? ? 1.464 1.373 0.091 0.008 N 61 8 C2 B DT 14 ? ? O2 B DT 14 ? ? 1.020 1.220 -0.200 0.008 N 62 8 C2 C DT 6 ? ? O2 C DT 6 ? ? 1.273 1.220 0.053 0.008 N 63 8 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.368 1.252 0.116 0.011 N 64 8 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.366 1.252 0.114 0.011 N 65 9 N1 B DT 12 ? ? C2 B DT 12 ? ? 1.460 1.376 0.084 0.008 N 66 9 C2 B DT 12 ? ? N3 B DT 12 ? ? 1.462 1.373 0.089 0.008 N 67 9 N3 B DT 12 ? ? C4 B DT 12 ? ? 1.332 1.382 -0.050 0.008 N 68 9 C5 B DT 12 ? ? C6 B DT 12 ? ? 1.390 1.339 0.051 0.007 N 69 9 C2 B DT 12 ? ? O2 B DT 12 ? ? 1.027 1.220 -0.193 0.008 N 70 9 C4 B DT 12 ? ? O4 B DT 12 ? ? 1.283 1.228 0.055 0.009 N 71 9 C5 B DT 12 ? ? C7 B DT 12 ? ? 1.447 1.496 -0.049 0.006 N 72 9 N3 C DA 5 ? ? C4 C DA 5 ? ? 1.390 1.344 0.046 0.006 N 73 9 N9 C DA 5 ? ? C4 C DA 5 ? ? 1.307 1.374 -0.067 0.006 N 74 9 N1 C DT 6 ? ? C2 C DT 6 ? ? 1.525 1.376 0.149 0.008 N 75 9 C2 C DT 6 ? ? N3 C DT 6 ? ? 1.534 1.373 0.161 0.008 N 76 9 N3 C DT 6 ? ? C4 C DT 6 ? ? 1.316 1.382 -0.066 0.008 N 77 9 C5 C DT 6 ? ? C6 C DT 6 ? ? 1.384 1.339 0.045 0.007 N 78 9 C6 C DT 6 ? ? N1 C DT 6 ? ? 1.315 1.378 -0.063 0.007 N 79 9 C2 C DT 6 ? ? O2 C DT 6 ? ? 0.870 1.220 -0.350 0.008 N 80 9 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.369 1.252 0.117 0.011 N 81 9 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.369 1.252 0.117 0.011 N 82 10 C4 C DT 10 ? ? C5 C DT 10 ? ? 1.506 1.445 0.061 0.009 N 83 10 C5 C DT 10 ? ? C6 C DT 10 ? ? 1.152 1.339 -0.187 0.007 N 84 10 C6 C DT 10 ? ? N1 C DT 10 ? ? 1.443 1.378 0.065 0.007 N 85 10 C4 C DT 10 ? ? O4 C DT 10 ? ? 1.163 1.228 -0.065 0.009 N 86 10 C5 C DT 10 ? ? C7 C DT 10 ? ? 1.581 1.496 0.085 0.006 N 87 10 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.370 1.252 0.118 0.011 N 88 10 CD A GLU 82 ? ? OE2 A GLU 82 ? ? 1.378 1.252 0.126 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT 5 ? ? "C4'" B DT 5 ? ? "C3'" B DT 5 ? ? 97.40 104.50 -7.10 0.40 N 2 1 "C1'" B DT 5 ? ? "O4'" B DT 5 ? ? "C4'" B DT 5 ? ? 117.31 110.30 7.01 0.70 N 3 1 "C3'" B DT 5 ? ? "C2'" B DT 5 ? ? "C1'" B DT 5 ? ? 115.35 102.50 12.85 1.20 N 4 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? "C2'" B DT 5 ? ? 94.44 105.90 -11.46 0.80 N 5 1 N1 B DT 5 ? ? "C1'" B DT 5 ? ? "C2'" B DT 5 ? ? 127.75 114.30 13.45 1.40 N 6 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 112.44 108.30 4.14 0.30 N 7 1 N1 B DT 5 ? ? C2 B DT 5 ? ? N3 B DT 5 ? ? 106.16 114.60 -8.44 0.60 N 8 1 N3 B DT 5 ? ? C4 B DT 5 ? ? C5 B DT 5 ? ? 119.70 115.20 4.50 0.60 N 9 1 N3 B DT 5 ? ? C2 B DT 5 ? ? O2 B DT 5 ? ? 127.60 122.30 5.30 0.60 N 10 1 C5 B DT 5 ? ? C4 B DT 5 ? ? O4 B DT 5 ? ? 120.27 124.90 -4.63 0.70 N 11 1 N1 C DA 12 ? ? C6 C DA 12 ? ? N6 C DA 12 ? ? 124.19 118.60 5.59 0.60 N 12 1 C5 C DA 12 ? ? C6 C DA 12 ? ? N6 C DA 12 ? ? 118.86 123.70 -4.84 0.80 N 13 1 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 123.71 120.30 3.41 0.50 N 14 1 NE A ARG 76 ? ? CZ A ARG 76 ? ? NH2 A ARG 76 ? ? 116.67 120.30 -3.63 0.50 N 15 1 NE A ARG 99 ? ? CZ A ARG 99 ? ? NH1 A ARG 99 ? ? 124.16 120.30 3.86 0.50 N 16 2 C6 B DT 12 ? ? N1 B DT 12 ? ? C2 B DT 12 ? ? 127.42 121.30 6.12 0.50 N 17 2 N1 B DT 12 ? ? C2 B DT 12 ? ? N3 B DT 12 ? ? 103.32 114.60 -11.28 0.60 N 18 2 C2 B DT 12 ? ? N3 B DT 12 ? ? C4 B DT 12 ? ? 132.21 127.20 5.01 0.60 N 19 2 N1 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 129.42 123.10 6.32 0.80 N 20 2 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 127.25 122.30 4.95 0.60 N 21 2 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH1 A ARG 47 ? ? 123.49 120.30 3.19 0.50 N 22 2 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH2 A ARG 47 ? ? 117.18 120.30 -3.12 0.50 N 23 2 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 124.03 120.30 3.73 0.50 N 24 2 CB A LEU 54 ? ? CA A LEU 54 ? ? C A LEU 54 ? ? 95.36 110.20 -14.84 1.90 N 25 2 CA A LEU 54 ? ? C A LEU 54 ? ? O A LEU 54 ? ? 105.68 120.10 -14.42 2.10 N 26 2 NE A ARG 68 ? ? CZ A ARG 68 ? ? NH2 A ARG 68 ? ? 116.64 120.30 -3.66 0.50 N 27 2 NE A ARG 94 ? ? CZ A ARG 94 ? ? NH1 A ARG 94 ? ? 123.58 120.30 3.28 0.50 N 28 2 NE A ARG 103 ? ? CZ A ARG 103 ? ? NH1 A ARG 103 ? ? 124.19 120.30 3.89 0.50 N 29 3 C6 C DT 8 ? ? N1 C DT 8 ? ? C2 C DT 8 ? ? 125.06 121.30 3.76 0.50 N 30 3 C4 C DT 8 ? ? C5 C DT 8 ? ? C6 C DT 8 ? ? 121.60 118.00 3.60 0.60 N 31 3 C5 C DT 8 ? ? C6 C DT 8 ? ? N1 C DT 8 ? ? 117.67 123.70 -6.03 0.60 N 32 3 NE A ARG 20 ? ? CZ A ARG 20 ? ? NH1 A ARG 20 ? ? 123.58 120.30 3.28 0.50 N 33 3 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 123.79 120.30 3.49 0.50 N 34 3 NE A ARG 99 ? ? CZ A ARG 99 ? ? NH1 A ARG 99 ? ? 123.59 120.30 3.29 0.50 N 35 4 N1 B DT 14 ? ? C2 B DT 14 ? ? N3 B DT 14 ? ? 109.44 114.60 -5.16 0.60 N 36 4 N3 B DT 14 ? ? C4 B DT 14 ? ? C5 B DT 14 ? ? 109.77 115.20 -5.43 0.60 N 37 4 C4 B DT 14 ? ? C5 B DT 14 ? ? C6 B DT 14 ? ? 123.82 118.00 5.82 0.60 N 38 4 C5 B DT 14 ? ? C4 B DT 14 ? ? O4 B DT 14 ? ? 130.07 124.90 5.17 0.70 N 39 4 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 114.17 119.00 -4.83 0.60 N 40 4 NE A ARG 20 ? ? CZ A ARG 20 ? ? NH2 A ARG 20 ? ? 117.17 120.30 -3.13 0.50 N 41 4 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 123.82 120.30 3.52 0.50 N 42 4 NE A ARG 75 ? ? CZ A ARG 75 ? ? NH1 A ARG 75 ? ? 123.52 120.30 3.22 0.50 N 43 4 NE A ARG 88 ? ? CZ A ARG 88 ? ? NH1 A ARG 88 ? ? 124.10 120.30 3.80 0.50 N 44 4 NE A ARG 88 ? ? CZ A ARG 88 ? ? NH2 A ARG 88 ? ? 116.77 120.30 -3.53 0.50 N 45 5 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? "C2'" B DT 12 ? ? 100.43 105.90 -5.47 0.80 N 46 5 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH2 A ARG 51 ? ? 117.26 120.30 -3.04 0.50 N 47 5 NE A ARG 68 ? ? CZ A ARG 68 ? ? NH1 A ARG 68 ? ? 123.34 120.30 3.04 0.50 N 48 5 NE A ARG 94 ? ? CZ A ARG 94 ? ? NH1 A ARG 94 ? ? 123.53 120.30 3.23 0.50 N 49 5 NE A ARG 103 ? ? CZ A ARG 103 ? ? NH1 A ARG 103 ? ? 123.31 120.30 3.01 0.50 N 50 5 NE A ARG 103 ? ? CZ A ARG 103 ? ? NH2 A ARG 103 ? ? 117.29 120.30 -3.01 0.50 N 51 6 "C3'" B DA 10 ? ? "O3'" B DA 10 ? ? P B DA 11 ? ? 131.39 119.70 11.69 1.20 Y 52 6 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH1 A ARG 47 ? ? 123.36 120.30 3.06 0.50 N 53 6 NE A ARG 99 ? ? CZ A ARG 99 ? ? NH1 A ARG 99 ? ? 123.58 120.30 3.28 0.50 N 54 7 C6 B DT 12 ? ? N1 B DT 12 ? ? C2 B DT 12 ? ? 129.19 121.30 7.89 0.50 N 55 7 N3 B DT 12 ? ? C4 B DT 12 ? ? C5 B DT 12 ? ? 100.28 115.20 -14.92 0.60 N 56 7 C4 B DT 12 ? ? C5 B DT 12 ? ? C6 B DT 12 ? ? 140.52 118.00 22.52 0.60 N 57 7 C5 B DT 12 ? ? C6 B DT 12 ? ? N1 B DT 12 ? ? 108.27 123.70 -15.43 0.60 N 58 7 N1 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 128.30 123.10 5.20 0.80 N 59 7 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 115.37 122.30 -6.93 0.60 N 60 7 N3 B DT 12 ? ? C4 B DT 12 ? ? O4 B DT 12 ? ? 113.55 119.90 -6.35 0.60 N 61 7 C5 B DT 12 ? ? C4 B DT 12 ? ? O4 B DT 12 ? ? 146.14 124.90 21.24 0.70 N 62 7 C4 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 106.91 119.00 -12.09 0.60 N 63 7 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 111.94 122.90 -10.96 0.60 N 64 7 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 123.66 120.30 3.36 0.50 N 65 7 NE A ARG 94 ? ? CZ A ARG 94 ? ? NH1 A ARG 94 ? ? 123.43 120.30 3.13 0.50 N 66 7 NE A ARG 103 ? ? CZ A ARG 103 ? ? NH1 A ARG 103 ? ? 124.00 120.30 3.70 0.50 N 67 8 "C3'" B DA 10 ? ? "O3'" B DA 10 ? ? P B DA 11 ? ? 130.57 119.70 10.87 1.20 Y 68 8 "C3'" B DA 11 ? ? "O3'" B DA 11 ? ? P B DT 12 ? ? 128.22 119.70 8.52 1.20 Y 69 8 C6 B DT 12 ? ? N1 B DT 12 ? ? C2 B DT 12 ? ? 106.39 121.30 -14.91 0.50 N 70 8 N1 B DT 12 ? ? C2 B DT 12 ? ? N3 B DT 12 ? ? 141.57 114.60 26.97 0.60 N 71 8 C2 B DT 12 ? ? N3 B DT 12 ? ? C4 B DT 12 ? ? 115.53 127.20 -11.67 0.60 N 72 8 N1 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 108.56 123.10 -14.54 0.80 N 73 8 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 109.86 122.30 -12.44 0.60 N 74 8 C2 B DT 12 ? ? N1 B DT 12 ? ? "C1'" B DT 12 ? ? 135.94 118.20 17.74 1.60 N 75 8 C6 B DT 14 ? ? N1 B DT 14 ? ? C2 B DT 14 ? ? 125.79 121.30 4.49 0.50 N 76 8 N1 B DT 14 ? ? C2 B DT 14 ? ? N3 B DT 14 ? ? 105.47 114.60 -9.13 0.60 N 77 8 C2 B DT 14 ? ? N3 B DT 14 ? ? C4 B DT 14 ? ? 131.65 127.20 4.45 0.60 N 78 8 N3 B DT 14 ? ? C2 B DT 14 ? ? O2 B DT 14 ? ? 126.67 122.30 4.37 0.60 N 79 8 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 110.14 108.30 1.84 0.30 N 80 8 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 123.87 120.30 3.57 0.50 N 81 8 NE A ARG 75 ? ? CZ A ARG 75 ? ? NH1 A ARG 75 ? ? 123.86 120.30 3.56 0.50 N 82 8 NE A ARG 94 ? ? CZ A ARG 94 ? ? NH1 A ARG 94 ? ? 123.81 120.30 3.51 0.50 N 83 9 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? "C2'" B DT 12 ? ? 100.11 105.90 -5.79 0.80 N 84 9 N1 B DT 12 ? ? C2 B DT 12 ? ? N3 B DT 12 ? ? 107.63 114.60 -6.97 0.60 N 85 9 N3 B DT 12 ? ? C4 B DT 12 ? ? C5 B DT 12 ? ? 119.96 115.20 4.76 0.60 N 86 9 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 127.11 122.30 4.81 0.60 N 87 9 C4 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 123.48 119.00 4.48 0.60 N 88 9 C6 C DT 6 ? ? N1 C DT 6 ? ? C2 C DT 6 ? ? 129.51 121.30 8.21 0.50 N 89 9 N1 C DT 6 ? ? C2 C DT 6 ? ? N3 C DT 6 ? ? 99.08 114.60 -15.52 0.60 N 90 9 C2 C DT 6 ? ? N3 C DT 6 ? ? C4 C DT 6 ? ? 133.86 127.20 6.66 0.60 N 91 9 N1 C DT 6 ? ? C2 C DT 6 ? ? O2 C DT 6 ? ? 131.43 123.10 8.33 0.80 N 92 9 N3 C DT 6 ? ? C2 C DT 6 ? ? O2 C DT 6 ? ? 129.49 122.30 7.19 0.60 N 93 9 "O4'" C DT 10 ? ? "C1'" C DT 10 ? ? "C2'" C DT 10 ? ? 100.99 105.90 -4.91 0.80 N 94 9 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH2 A ARG 47 ? ? 116.91 120.30 -3.39 0.50 N 95 9 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 123.49 120.30 3.19 0.50 N 96 10 C6 C DT 10 ? ? N1 C DT 10 ? ? C2 C DT 10 ? ? 116.87 121.30 -4.43 0.50 N 97 10 C2 C DT 10 ? ? N3 C DT 10 ? ? C4 C DT 10 ? ? 131.84 127.20 4.64 0.60 N 98 10 N3 C DT 10 ? ? C4 C DT 10 ? ? C5 C DT 10 ? ? 107.25 115.20 -7.95 0.60 N 99 10 C4 C DT 10 ? ? C5 C DT 10 ? ? C6 C DT 10 ? ? 123.92 118.00 5.92 0.60 N 100 10 C5 C DT 10 ? ? C4 C DT 10 ? ? O4 C DT 10 ? ? 130.85 124.90 5.95 0.70 N 101 10 C4 C DT 10 ? ? C5 C DT 10 ? ? C7 C DT 10 ? ? 110.15 119.00 -8.85 0.60 N 102 10 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH2 A ARG 47 ? ? 117.29 120.30 -3.01 0.50 N 103 10 NE A ARG 75 ? ? CZ A ARG 75 ? ? NH1 A ARG 75 ? ? 123.33 120.30 3.03 0.50 N 104 10 NE A ARG 76 ? ? CZ A ARG 76 ? ? NH1 A ARG 76 ? ? 123.41 120.30 3.11 0.50 N 105 10 NE A ARG 88 ? ? CZ A ARG 88 ? ? NH2 A ARG 88 ? ? 116.48 120.30 -3.82 0.50 N 106 10 NE A ARG 94 ? ? CZ A ARG 94 ? ? NH1 A ARG 94 ? ? 124.32 120.30 4.02 0.50 N 107 10 NE A ARG 94 ? ? CZ A ARG 94 ? ? NH2 A ARG 94 ? ? 116.03 120.30 -4.27 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 6 ? ? -29.99 137.83 2 1 THR A 96 ? ? -139.93 -60.18 3 1 ARG A 103 ? ? -153.45 -62.45 4 2 VAL A 58 ? ? -105.78 -62.19 5 2 VAL A 65 ? ? -47.92 168.28 6 3 VAL A 58 ? ? -99.86 -60.54 7 4 ALA A 2 ? ? -144.21 17.72 8 4 VAL A 6 ? ? -35.49 133.64 9 4 THR A 61 ? ? 63.30 -24.73 10 4 THR A 96 ? ? -127.21 -57.30 11 5 VAL A 58 ? ? -99.07 -63.00 12 6 ALA A 2 ? ? -148.54 27.02 13 6 VAL A 3 ? ? 78.12 102.86 14 6 HIS A 19 ? ? 71.66 39.82 15 6 THR A 96 ? ? -134.95 -61.86 16 7 ALA A 2 ? ? 46.17 -145.52 17 7 GLU A 5 ? ? 69.95 145.16 18 7 GLU A 46 ? ? 81.53 32.21 19 7 VAL A 58 ? ? -109.25 -72.49 20 7 THR A 96 ? ? -135.09 -59.65 21 8 THR A 61 ? ? 79.52 -47.76 22 8 ASN A 62 ? ? -91.04 34.65 23 8 VAL A 65 ? ? -41.18 157.04 24 8 THR A 96 ? ? -133.49 -63.77 25 10 GLU A 5 ? ? 97.87 127.70 26 10 THR A 96 ? ? -139.70 -63.08 27 10 ARG A 103 ? ? -143.80 -110.79 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 8 VAL A 63 ? ? TYR A 64 ? ? -148.09 2 10 VAL A 63 ? ? TYR A 64 ? ? -149.95 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 ARG A 68 ? ? 0.081 'SIDE CHAIN' 2 3 ARG A 20 ? ? 0.076 'SIDE CHAIN' 3 3 ARG A 103 ? ? 0.082 'SIDE CHAIN' 4 4 ARG A 94 ? ? 0.090 'SIDE CHAIN' 5 5 ARG A 20 ? ? 0.084 'SIDE CHAIN' 6 5 ARG A 51 ? ? 0.123 'SIDE CHAIN' 7 5 ARG A 75 ? ? 0.154 'SIDE CHAIN' 8 6 ARG A 51 ? ? 0.110 'SIDE CHAIN' 9 6 ARG A 75 ? ? 0.096 'SIDE CHAIN' 10 6 ARG A 88 ? ? 0.074 'SIDE CHAIN' 11 7 ARG A 76 ? ? 0.085 'SIDE CHAIN' 12 9 ARG A 20 ? ? 0.076 'SIDE CHAIN' 13 9 ARG A 94 ? ? 0.094 'SIDE CHAIN' 14 10 ARG A 47 ? ? 0.090 'SIDE CHAIN' 15 10 ARG A 51 ? ? 0.114 'SIDE CHAIN' 16 10 ARG A 68 ? ? 0.109 'SIDE CHAIN' 17 10 ARG A 76 ? ? 0.134 'SIDE CHAIN' # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 2 _pdbx_validate_main_chain_plane.auth_comp_id LEU _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 54 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -12.94 # _pdbx_nmr_ensemble.entry_id 2Z33 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2Z33 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1-2mM PhoB-DNA U-15N, 13C; 10mM potassium phosphate buffer; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '3D SEQUENTIAL ASSIGNMENT PROTOCOL' 1 2 1 '3D HNHA' 1 3 1 4D_13C-SEPARATED_NOESY 1 4 1 4D_13C/15N-SEPARATED_NOESY 1 5 1 3D_15N-SEPARATED_NOESY 1 6 1 '3D_13C_SEPARATED_NOESY, 2D NOESY' 1 7 1 '2D TOCSY AND 2D COSY' 1 # _pdbx_nmr_refine.entry_id 2Z33 _pdbx_nmr_refine.method ;simulated annealing molecluar dynamics ; _pdbx_nmr_refine.details ;THE STRUCTURES ARE BASED ON A TOTAL OF 2508 RESTRAINTS, 2263 ARE NOE-DERIVED DISTANCE RESTRAINTS 229 ARE DIHEDRAL ANGLE RESTRAINTS AND 16 ARE RESTRAINTS OF DNA BASE PLANALITY RESTRAINTS. STRUCTURE CALCULATIONS WERE PERFORMED WITH CNS BY FOLLOWIN PROCEDURE. FIRST, ONLY THE STRUCTURES OF PROTEIN WERE CALCULATED USING THE HYBRID DISTANCE GEOMETRY-SIMULATED ANNEAING PROTOCOL WITH THE INTRA-PROTEIN RESTRAINTS, 10 OUT OF 100 CALCULATED STRUCTURES WERE SELECTED BY HAVING NO DISTANCE VIOLATION GREATER THAN 0.2 ANGSTROMS AND NO DIHEDRAL ANGLE VIOLATION GREATER THAN 2 DEGREES and A LOW TARGET ENERGY. SECOND, THE PROTEIN AND AN IDEALIZED B-FORM OF 16-MER DUPLEX DNA WERE DOCKED BY A SIMULATED ANNEALING PROTOCOL, FOR WHICH THE INTRA-DNA, INTER-MOLECULAR AND INTRA-PROTEIN RESTRAINTS WERE EMPLOYED. AS AN INITIAL STRUCTURE, EACH OF THE 10 PROTEIN STRUCTURES WAS PLACED IN 15 DIFFERENT POSITIONS 50 ANGSTROMS AWAY FROM THE DNA. NEXT, EACH OF THE 150 DOCKED COMPLEX STRUCTURES WAS FURTHER REFINED BY A SIMULATED ANNEALING PROTOCOL. FINALLY, 20 STRUCTURES WERE SELECTED BY HAVING NO DISTANCE VIOLATION GREATER THAN 0.2 ANGSTROME AND NO TORSION ANGLE VIOLATION THAN 2 DEGREES AND A LOW TARGET ENERGY. ADDITIONALLY, 10 CNS-SELECTED STRUCTURES WERE REFINED IN REALISTIC SOLUTION SISTEM BY USING MOLECULAR DYNAMICS SIMULATION PROGRAM, MARBLE WITH RESTRAINT FUNCTIONS FOR NOE DISTANCE DIHEDRAL ANGLE AND PLANARITY OF DNA BASE PAIR USED IN CNS. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'data analysis' NMRPipe ? ? 1 'data analysis' PIPP ? ? 2 refinement CNS 1.0 'A.BRUNGER et al.' 3 refinement MARBLE 0.3.46 M.Ikeguchi 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 ILE N N N N 287 ILE CA C N S 288 ILE C C N N 289 ILE O O N N 290 ILE CB C N S 291 ILE CG1 C N N 292 ILE CG2 C N N 293 ILE CD1 C N N 294 ILE OXT O N N 295 ILE H H N N 296 ILE H2 H N N 297 ILE HA H N N 298 ILE HB H N N 299 ILE HG12 H N N 300 ILE HG13 H N N 301 ILE HG21 H N N 302 ILE HG22 H N N 303 ILE HG23 H N N 304 ILE HD11 H N N 305 ILE HD12 H N N 306 ILE HD13 H N N 307 ILE HXT H N N 308 LEU N N N N 309 LEU CA C N S 310 LEU C C N N 311 LEU O O N N 312 LEU CB C N N 313 LEU CG C N N 314 LEU CD1 C N N 315 LEU CD2 C N N 316 LEU OXT O N N 317 LEU H H N N 318 LEU H2 H N N 319 LEU HA H N N 320 LEU HB2 H N N 321 LEU HB3 H N N 322 LEU HG H N N 323 LEU HD11 H N N 324 LEU HD12 H N N 325 LEU HD13 H N N 326 LEU HD21 H N N 327 LEU HD22 H N N 328 LEU HD23 H N N 329 LEU HXT H N N 330 LYS N N N N 331 LYS CA C N S 332 LYS C C N N 333 LYS O O N N 334 LYS CB C N N 335 LYS CG C N N 336 LYS CD C N N 337 LYS CE C N N 338 LYS NZ N N N 339 LYS OXT O N N 340 LYS H H N N 341 LYS H2 H N N 342 LYS HA H N N 343 LYS HB2 H N N 344 LYS HB3 H N N 345 LYS HG2 H N N 346 LYS HG3 H N N 347 LYS HD2 H N N 348 LYS HD3 H N N 349 LYS HE2 H N N 350 LYS HE3 H N N 351 LYS HZ1 H N N 352 LYS HZ2 H N N 353 LYS HZ3 H N N 354 LYS HXT H N N 355 MET N N N N 356 MET CA C N S 357 MET C C N N 358 MET O O N N 359 MET CB C N N 360 MET CG C N N 361 MET SD S N N 362 MET CE C N N 363 MET OXT O N N 364 MET H H N N 365 MET H2 H N N 366 MET HA H N N 367 MET HB2 H N N 368 MET HB3 H N N 369 MET HG2 H N N 370 MET HG3 H N N 371 MET HE1 H N N 372 MET HE2 H N N 373 MET HE3 H N N 374 MET HXT H N N 375 PHE N N N N 376 PHE CA C N S 377 PHE C C N N 378 PHE O O N N 379 PHE CB C N N 380 PHE CG C Y N 381 PHE CD1 C Y N 382 PHE CD2 C Y N 383 PHE CE1 C Y N 384 PHE CE2 C Y N 385 PHE CZ C Y N 386 PHE OXT O N N 387 PHE H H N N 388 PHE H2 H N N 389 PHE HA H N N 390 PHE HB2 H N N 391 PHE HB3 H N N 392 PHE HD1 H N N 393 PHE HD2 H N N 394 PHE HE1 H N N 395 PHE HE2 H N N 396 PHE HZ H N N 397 PHE HXT H N N 398 PRO N N N N 399 PRO CA C N S 400 PRO C C N N 401 PRO O O N N 402 PRO CB C N N 403 PRO CG C N N 404 PRO CD C N N 405 PRO OXT O N N 406 PRO H H N N 407 PRO HA H N N 408 PRO HB2 H N N 409 PRO HB3 H N N 410 PRO HG2 H N N 411 PRO HG3 H N N 412 PRO HD2 H N N 413 PRO HD3 H N N 414 PRO HXT H N N 415 SER N N N N 416 SER CA C N S 417 SER C C N N 418 SER O O N N 419 SER CB C N N 420 SER OG O N N 421 SER OXT O N N 422 SER H H N N 423 SER H2 H N N 424 SER HA H N N 425 SER HB2 H N N 426 SER HB3 H N N 427 SER HG H N N 428 SER HXT H N N 429 THR N N N N 430 THR CA C N S 431 THR C C N N 432 THR O O N N 433 THR CB C N R 434 THR OG1 O N N 435 THR CG2 C N N 436 THR OXT O N N 437 THR H H N N 438 THR H2 H N N 439 THR HA H N N 440 THR HB H N N 441 THR HG1 H N N 442 THR HG21 H N N 443 THR HG22 H N N 444 THR HG23 H N N 445 THR HXT H N N 446 TRP N N N N 447 TRP CA C N S 448 TRP C C N N 449 TRP O O N N 450 TRP CB C N N 451 TRP CG C Y N 452 TRP CD1 C Y N 453 TRP CD2 C Y N 454 TRP NE1 N Y N 455 TRP CE2 C Y N 456 TRP CE3 C Y N 457 TRP CZ2 C Y N 458 TRP CZ3 C Y N 459 TRP CH2 C Y N 460 TRP OXT O N N 461 TRP H H N N 462 TRP H2 H N N 463 TRP HA H N N 464 TRP HB2 H N N 465 TRP HB3 H N N 466 TRP HD1 H N N 467 TRP HE1 H N N 468 TRP HE3 H N N 469 TRP HZ2 H N N 470 TRP HZ3 H N N 471 TRP HH2 H N N 472 TRP HXT H N N 473 TYR N N N N 474 TYR CA C N S 475 TYR C C N N 476 TYR O O N N 477 TYR CB C N N 478 TYR CG C Y N 479 TYR CD1 C Y N 480 TYR CD2 C Y N 481 TYR CE1 C Y N 482 TYR CE2 C Y N 483 TYR CZ C Y N 484 TYR OH O N N 485 TYR OXT O N N 486 TYR H H N N 487 TYR H2 H N N 488 TYR HA H N N 489 TYR HB2 H N N 490 TYR HB3 H N N 491 TYR HD1 H N N 492 TYR HD2 H N N 493 TYR HE1 H N N 494 TYR HE2 H N N 495 TYR HH H N N 496 TYR HXT H N N 497 VAL N N N N 498 VAL CA C N S 499 VAL C C N N 500 VAL O O N N 501 VAL CB C N N 502 VAL CG1 C N N 503 VAL CG2 C N N 504 VAL OXT O N N 505 VAL H H N N 506 VAL H2 H N N 507 VAL HA H N N 508 VAL HB H N N 509 VAL HG11 H N N 510 VAL HG12 H N N 511 VAL HG13 H N N 512 VAL HG21 H N N 513 VAL HG22 H N N 514 VAL HG23 H N N 515 VAL HXT H N N 516 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 ILE N CA sing N N 286 ILE N H sing N N 287 ILE N H2 sing N N 288 ILE CA C sing N N 289 ILE CA CB sing N N 290 ILE CA HA sing N N 291 ILE C O doub N N 292 ILE C OXT sing N N 293 ILE CB CG1 sing N N 294 ILE CB CG2 sing N N 295 ILE CB HB sing N N 296 ILE CG1 CD1 sing N N 297 ILE CG1 HG12 sing N N 298 ILE CG1 HG13 sing N N 299 ILE CG2 HG21 sing N N 300 ILE CG2 HG22 sing N N 301 ILE CG2 HG23 sing N N 302 ILE CD1 HD11 sing N N 303 ILE CD1 HD12 sing N N 304 ILE CD1 HD13 sing N N 305 ILE OXT HXT sing N N 306 LEU N CA sing N N 307 LEU N H sing N N 308 LEU N H2 sing N N 309 LEU CA C sing N N 310 LEU CA CB sing N N 311 LEU CA HA sing N N 312 LEU C O doub N N 313 LEU C OXT sing N N 314 LEU CB CG sing N N 315 LEU CB HB2 sing N N 316 LEU CB HB3 sing N N 317 LEU CG CD1 sing N N 318 LEU CG CD2 sing N N 319 LEU CG HG sing N N 320 LEU CD1 HD11 sing N N 321 LEU CD1 HD12 sing N N 322 LEU CD1 HD13 sing N N 323 LEU CD2 HD21 sing N N 324 LEU CD2 HD22 sing N N 325 LEU CD2 HD23 sing N N 326 LEU OXT HXT sing N N 327 LYS N CA sing N N 328 LYS N H sing N N 329 LYS N H2 sing N N 330 LYS CA C sing N N 331 LYS CA CB sing N N 332 LYS CA HA sing N N 333 LYS C O doub N N 334 LYS C OXT sing N N 335 LYS CB CG sing N N 336 LYS CB HB2 sing N N 337 LYS CB HB3 sing N N 338 LYS CG CD sing N N 339 LYS CG HG2 sing N N 340 LYS CG HG3 sing N N 341 LYS CD CE sing N N 342 LYS CD HD2 sing N N 343 LYS CD HD3 sing N N 344 LYS CE NZ sing N N 345 LYS CE HE2 sing N N 346 LYS CE HE3 sing N N 347 LYS NZ HZ1 sing N N 348 LYS NZ HZ2 sing N N 349 LYS NZ HZ3 sing N N 350 LYS OXT HXT sing N N 351 MET N CA sing N N 352 MET N H sing N N 353 MET N H2 sing N N 354 MET CA C sing N N 355 MET CA CB sing N N 356 MET CA HA sing N N 357 MET C O doub N N 358 MET C OXT sing N N 359 MET CB CG sing N N 360 MET CB HB2 sing N N 361 MET CB HB3 sing N N 362 MET CG SD sing N N 363 MET CG HG2 sing N N 364 MET CG HG3 sing N N 365 MET SD CE sing N N 366 MET CE HE1 sing N N 367 MET CE HE2 sing N N 368 MET CE HE3 sing N N 369 MET OXT HXT sing N N 370 PHE N CA sing N N 371 PHE N H sing N N 372 PHE N H2 sing N N 373 PHE CA C sing N N 374 PHE CA CB sing N N 375 PHE CA HA sing N N 376 PHE C O doub N N 377 PHE C OXT sing N N 378 PHE CB CG sing N N 379 PHE CB HB2 sing N N 380 PHE CB HB3 sing N N 381 PHE CG CD1 doub Y N 382 PHE CG CD2 sing Y N 383 PHE CD1 CE1 sing Y N 384 PHE CD1 HD1 sing N N 385 PHE CD2 CE2 doub Y N 386 PHE CD2 HD2 sing N N 387 PHE CE1 CZ doub Y N 388 PHE CE1 HE1 sing N N 389 PHE CE2 CZ sing Y N 390 PHE CE2 HE2 sing N N 391 PHE CZ HZ sing N N 392 PHE OXT HXT sing N N 393 PRO N CA sing N N 394 PRO N CD sing N N 395 PRO N H sing N N 396 PRO CA C sing N N 397 PRO CA CB sing N N 398 PRO CA HA sing N N 399 PRO C O doub N N 400 PRO C OXT sing N N 401 PRO CB CG sing N N 402 PRO CB HB2 sing N N 403 PRO CB HB3 sing N N 404 PRO CG CD sing N N 405 PRO CG HG2 sing N N 406 PRO CG HG3 sing N N 407 PRO CD HD2 sing N N 408 PRO CD HD3 sing N N 409 PRO OXT HXT sing N N 410 SER N CA sing N N 411 SER N H sing N N 412 SER N H2 sing N N 413 SER CA C sing N N 414 SER CA CB sing N N 415 SER CA HA sing N N 416 SER C O doub N N 417 SER C OXT sing N N 418 SER CB OG sing N N 419 SER CB HB2 sing N N 420 SER CB HB3 sing N N 421 SER OG HG sing N N 422 SER OXT HXT sing N N 423 THR N CA sing N N 424 THR N H sing N N 425 THR N H2 sing N N 426 THR CA C sing N N 427 THR CA CB sing N N 428 THR CA HA sing N N 429 THR C O doub N N 430 THR C OXT sing N N 431 THR CB OG1 sing N N 432 THR CB CG2 sing N N 433 THR CB HB sing N N 434 THR OG1 HG1 sing N N 435 THR CG2 HG21 sing N N 436 THR CG2 HG22 sing N N 437 THR CG2 HG23 sing N N 438 THR OXT HXT sing N N 439 TRP N CA sing N N 440 TRP N H sing N N 441 TRP N H2 sing N N 442 TRP CA C sing N N 443 TRP CA CB sing N N 444 TRP CA HA sing N N 445 TRP C O doub N N 446 TRP C OXT sing N N 447 TRP CB CG sing N N 448 TRP CB HB2 sing N N 449 TRP CB HB3 sing N N 450 TRP CG CD1 doub Y N 451 TRP CG CD2 sing Y N 452 TRP CD1 NE1 sing Y N 453 TRP CD1 HD1 sing N N 454 TRP CD2 CE2 doub Y N 455 TRP CD2 CE3 sing Y N 456 TRP NE1 CE2 sing Y N 457 TRP NE1 HE1 sing N N 458 TRP CE2 CZ2 sing Y N 459 TRP CE3 CZ3 doub Y N 460 TRP CE3 HE3 sing N N 461 TRP CZ2 CH2 doub Y N 462 TRP CZ2 HZ2 sing N N 463 TRP CZ3 CH2 sing Y N 464 TRP CZ3 HZ3 sing N N 465 TRP CH2 HH2 sing N N 466 TRP OXT HXT sing N N 467 TYR N CA sing N N 468 TYR N H sing N N 469 TYR N H2 sing N N 470 TYR CA C sing N N 471 TYR CA CB sing N N 472 TYR CA HA sing N N 473 TYR C O doub N N 474 TYR C OXT sing N N 475 TYR CB CG sing N N 476 TYR CB HB2 sing N N 477 TYR CB HB3 sing N N 478 TYR CG CD1 doub Y N 479 TYR CG CD2 sing Y N 480 TYR CD1 CE1 sing Y N 481 TYR CD1 HD1 sing N N 482 TYR CD2 CE2 doub Y N 483 TYR CD2 HD2 sing N N 484 TYR CE1 CZ doub Y N 485 TYR CE1 HE1 sing N N 486 TYR CE2 CZ sing Y N 487 TYR CE2 HE2 sing N N 488 TYR CZ OH sing N N 489 TYR OH HH sing N N 490 TYR OXT HXT sing N N 491 VAL N CA sing N N 492 VAL N H sing N N 493 VAL N H2 sing N N 494 VAL CA C sing N N 495 VAL CA CB sing N N 496 VAL CA HA sing N N 497 VAL C O doub N N 498 VAL C OXT sing N N 499 VAL CB CG1 sing N N 500 VAL CB CG2 sing N N 501 VAL CB HB sing N N 502 VAL CG1 HG11 sing N N 503 VAL CG1 HG12 sing N N 504 VAL CG1 HG13 sing N N 505 VAL CG2 HG21 sing N N 506 VAL CG2 HG22 sing N N 507 VAL CG2 HG23 sing N N 508 VAL OXT HXT sing N N 509 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2Z33 'double helix' 2Z33 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 16 1_555 0.171 0.028 -0.084 0.834 -0.289 -8.076 1 B_DA1:DT16_C B 1 ? C 16 ? 20 1 1 A DC 2 1_555 B DG 15 1_555 0.051 -0.008 -0.005 -0.580 -0.106 -0.536 2 B_DC2:DG15_C B 2 ? C 15 ? 19 1 1 A DT 3 1_555 B DA 14 1_555 0.242 -0.134 -0.004 0.616 -1.452 -0.732 3 B_DT3:DA14_C B 3 ? C 14 ? 20 1 1 A DG 4 1_555 B DC 13 1_555 -0.245 -0.101 -0.004 -0.415 1.556 -0.175 4 B_DG4:DC13_C B 4 ? C 13 ? 19 1 1 A DT 5 1_555 B DA 12 1_555 -0.219 0.011 -0.076 -0.158 -0.963 -9.944 5 B_DT5:DA12_C B 5 ? C 12 ? 20 1 1 A DC 6 1_555 B DG 11 1_555 -0.160 0.024 -0.020 0.308 -0.210 1.362 6 B_DC6:DG11_C B 6 ? C 11 ? 19 1 1 A DA 7 1_555 B DT 10 1_555 0.007 -0.099 -0.016 1.613 -1.153 2.766 7 B_DA7:DT10_C B 7 ? C 10 ? 20 1 1 A DT 8 1_555 B DA 9 1_555 0.008 -0.128 0.008 3.488 -1.700 -1.359 8 B_DT8:DA9_C B 8 ? C 9 ? 20 1 1 A DA 9 1_555 B DT 8 1_555 -0.160 -0.130 -0.063 1.380 -2.532 3.007 9 B_DA9:DT8_C B 9 ? C 8 ? 20 1 1 A DA 10 1_555 B DT 7 1_555 0.025 -0.075 -0.057 2.158 -2.953 3.166 10 B_DA10:DT7_C B 10 ? C 7 ? 20 1 1 A DA 11 1_555 B DT 6 1_555 0.107 -0.037 -0.043 0.187 -3.340 -1.132 11 B_DA11:DT6_C B 11 ? C 6 ? 20 1 1 A DT 12 1_555 B DA 5 1_555 -0.205 -0.124 -0.012 -2.085 -3.684 -3.654 12 B_DT12:DA5_C B 12 ? C 5 ? 20 1 1 A DC 13 1_555 B DG 4 1_555 0.378 -0.127 0.008 -2.734 -1.681 -0.831 13 B_DC13:DG4_C B 13 ? C 4 ? 19 1 1 A DT 14 1_555 B DA 3 1_555 0.117 0.007 -0.028 -2.088 -1.817 -5.843 14 B_DT14:DA3_C B 14 ? C 3 ? 20 1 1 A DG 15 1_555 B DC 2 1_555 0.017 -0.033 0.022 -0.646 -0.657 -0.712 15 B_DG15:DC2_C B 15 ? C 2 ? 19 1 1 A DT 16 1_555 B DA 1 1_555 0.060 -0.079 -0.052 1.845 -0.431 -0.106 16 B_DT16:DA1_C B 16 ? C 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 16 1_555 A DC 2 1_555 B DG 15 1_555 -0.221 -0.487 3.472 -2.013 3.918 33.589 -1.502 0.037 3.403 6.743 3.464 33.868 1 BB_DA1DC2:DG15DT16_CC B 1 ? C 16 ? B 2 ? C 15 ? 1 A DC 2 1_555 B DG 15 1_555 A DT 3 1_555 B DA 14 1_555 0.059 -0.184 3.509 1.443 -4.169 35.107 0.358 0.131 3.507 -6.878 -2.381 35.375 2 BB_DC2DT3:DA14DG15_CC B 2 ? C 15 ? B 3 ? C 14 ? 1 A DT 3 1_555 B DA 14 1_555 A DG 4 1_555 B DC 13 1_555 0.107 -0.360 3.367 0.006 -0.411 37.419 -0.506 -0.166 3.371 -0.641 -0.010 37.421 3 BB_DT3DG4:DC13DA14_CC B 3 ? C 14 ? B 4 ? C 13 ? 1 A DG 4 1_555 B DC 13 1_555 A DT 5 1_555 B DA 12 1_555 -0.756 -1.002 3.479 1.144 3.877 33.375 -2.394 1.502 3.318 6.719 -1.983 33.612 4 BB_DG4DT5:DA12DC13_CC B 4 ? C 13 ? B 5 ? C 12 ? 1 A DT 5 1_555 B DA 12 1_555 A DC 6 1_555 B DG 11 1_555 0.293 -0.639 3.391 -1.125 1.674 31.861 -1.474 -0.743 3.342 3.046 2.046 31.923 5 BB_DT5DC6:DG11DA12_CC B 5 ? C 12 ? B 6 ? C 11 ? 1 A DC 6 1_555 B DG 11 1_555 A DA 7 1_555 B DT 10 1_555 -0.149 -0.039 3.395 -2.559 3.670 37.521 -0.553 -0.112 3.379 5.681 3.962 37.777 6 BB_DC6DA7:DT10DG11_CC B 6 ? C 11 ? B 7 ? C 10 ? 1 A DA 7 1_555 B DT 10 1_555 A DT 8 1_555 B DA 9 1_555 -0.217 -0.379 3.388 -1.010 1.443 30.304 -1.023 0.205 3.372 2.757 1.930 30.353 7 BB_DA7DT8:DA9DT10_CC B 7 ? C 10 ? B 8 ? C 9 ? 1 A DT 8 1_555 B DA 9 1_555 A DA 9 1_555 B DT 8 1_555 0.169 -0.510 3.313 -0.142 2.923 39.988 -1.079 -0.263 3.269 4.268 0.207 40.090 8 BB_DT8DA9:DT8DA9_CC B 8 ? C 9 ? B 9 ? C 8 ? 1 A DA 9 1_555 B DT 8 1_555 A DA 10 1_555 B DT 7 1_555 -0.152 -0.485 3.291 -0.299 -3.127 35.973 -0.334 0.202 3.322 -5.051 0.483 36.105 9 BB_DA9DA10:DT7DT8_CC B 9 ? C 8 ? B 10 ? C 7 ? 1 A DA 10 1_555 B DT 7 1_555 A DA 11 1_555 B DT 6 1_555 -0.160 -1.030 3.311 -1.659 -0.238 33.898 -1.727 0.004 3.322 -0.407 2.844 33.939 10 BB_DA10DA11:DT6DT7_CC B 10 ? C 7 ? B 11 ? C 6 ? 1 A DA 11 1_555 B DT 6 1_555 A DT 12 1_555 B DA 5 1_555 -0.189 -0.969 3.304 -0.810 4.899 34.196 -2.382 0.195 3.143 8.276 1.368 34.544 11 BB_DA11DT12:DA5DT6_CC B 11 ? C 6 ? B 12 ? C 5 ? 1 A DT 12 1_555 B DA 5 1_555 A DC 13 1_555 B DG 4 1_555 0.074 -0.166 3.373 0.567 6.541 38.925 -1.039 -0.040 3.305 9.732 -0.844 39.453 12 BB_DT12DC13:DG4DA5_CC B 12 ? C 5 ? B 13 ? C 4 ? 1 A DC 13 1_555 B DG 4 1_555 A DT 14 1_555 B DA 3 1_555 -0.074 -0.193 3.330 2.460 4.379 31.839 -1.139 0.577 3.260 7.920 -4.449 32.223 13 BB_DC13DT14:DA3DG4_CC B 13 ? C 4 ? B 14 ? C 3 ? 1 A DT 14 1_555 B DA 3 1_555 A DG 15 1_555 B DC 2 1_555 0.220 -0.002 3.327 0.519 6.358 34.723 -0.962 -0.285 3.278 10.544 -0.860 35.286 14 BB_DT14DG15:DC2DA3_CC B 14 ? C 3 ? B 15 ? C 2 ? 1 A DG 15 1_555 B DC 2 1_555 A DT 16 1_555 B DA 1 1_555 0.165 -0.165 3.446 0.748 7.298 31.169 -1.682 -0.158 3.326 13.350 -1.368 32.000 15 BB_DG15DT16:DA1DC2_CC B 15 ? C 2 ? B 16 ? C 1 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 600 ? 2 DRX Bruker 500 ? # _atom_sites.entry_id 2Z33 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_