data_2Z3X # _entry.id 2Z3X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Z3X pdb_00002z3x 10.2210/pdb2z3x/pdb NDB PD1014 ? ? RCSB RCSB027489 ? ? WWPDB D_1000027489 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-10-24 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 1 4 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Source and taxonomy' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' citation_author 3 3 'Structure model' pdbx_entity_src_syn 4 4 'Structure model' database_2 5 4 'Structure model' struct_ref_seq_dif 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.country' 2 3 'Structure model' '_citation.journal_abbrev' 3 3 'Structure model' '_citation.journal_id_ASTM' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation.pdbx_database_id_DOI' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_citation.year' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' 15 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Z3X _pdbx_database_status.recvd_initial_deposition_date 2007-06-08 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, K.S.' 1 'Jedrzejas, M.J.' 2 # _citation.id primary _citation.title 'Structure of a protein-DNA complex essential for DNA protection in spores of Bacillus species.' _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_volume 105 _citation.page_first 2806 _citation.page_last 2811 _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 1091-6490 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18287075 _citation.pdbx_database_id_DOI 10.1073/pnas.0708244105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, K.S.' 1 ? primary 'Bumbaca, D.' 2 ? primary 'Kosman, J.' 3 ? primary 'Setlow, P.' 4 ? primary 'Jedrzejas, M.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*A)-3'" 3560.307 1 ? ? ? ? 2 polymer syn "5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*A)-3'" 3160.067 1 ? ? ? ? 3 polymer man 'Small, acid-soluble spore protein C' 6673.570 3 ? 'N13A, D14K' alpha/beta-type ? 4 water nat water 18.015 22 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name SASP # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DG)(DG)(DG)(DG)(DG)(DG)(DG)(DA)' GGGGGGGGGGA D ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DA)' CCCCCCCCCCA E ? 3 'polypeptide(L)' no no AKLLIPQAASAIEQMKLEIASEFGVQLGAETTSRANGSVGGEITKRLVRLAQQNMGGQFHGQQ AKLLIPQAASAIEQMKLEIASEFGVQLGAETTSRANGSVGGEITKRLVRLAQQNMGGQFHGQQ A,B,C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DA n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DC n 2 5 DC n 2 6 DC n 2 7 DC n 2 8 DC n 2 9 DC n 2 10 DC n 2 11 DA n 3 1 ALA n 3 2 LYS n 3 3 LEU n 3 4 LEU n 3 5 ILE n 3 6 PRO n 3 7 GLN n 3 8 ALA n 3 9 ALA n 3 10 SER n 3 11 ALA n 3 12 ILE n 3 13 GLU n 3 14 GLN n 3 15 MET n 3 16 LYS n 3 17 LEU n 3 18 GLU n 3 19 ILE n 3 20 ALA n 3 21 SER n 3 22 GLU n 3 23 PHE n 3 24 GLY n 3 25 VAL n 3 26 GLN n 3 27 LEU n 3 28 GLY n 3 29 ALA n 3 30 GLU n 3 31 THR n 3 32 THR n 3 33 SER n 3 34 ARG n 3 35 ALA n 3 36 ASN n 3 37 GLY n 3 38 SER n 3 39 VAL n 3 40 GLY n 3 41 GLY n 3 42 GLU n 3 43 ILE n 3 44 THR n 3 45 LYS n 3 46 ARG n 3 47 LEU n 3 48 VAL n 3 49 ARG n 3 50 LEU n 3 51 ALA n 3 52 GLN n 3 53 GLN n 3 54 ASN n 3 55 MET n 3 56 GLY n 3 57 GLY n 3 58 GLN n 3 59 PHE n 3 60 HIS n 3 61 GLY n 3 62 GLN n 3 63 GLN n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene sspC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET11d _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPS708 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG GUA D . n A 1 2 DG 2 2 2 DG GUA D . n A 1 3 DG 3 3 3 DG GUA D . n A 1 4 DG 4 4 4 DG GUA D . n A 1 5 DG 5 5 5 DG GUA D . n A 1 6 DG 6 6 6 DG GUA D . n A 1 7 DG 7 7 7 DG GUA D . n A 1 8 DG 8 8 8 DG GUA D . n A 1 9 DG 9 9 9 DG GUA D . n A 1 10 DG 10 10 10 DG GUA D . n A 1 11 DA 11 11 11 DA ADE D . n B 2 1 DC 1 12 12 DC CYT E . n B 2 2 DC 2 13 13 DC CYT E . n B 2 3 DC 3 14 14 DC CYT E . n B 2 4 DC 4 15 15 DC CYT E . n B 2 5 DC 5 16 16 DC CYT E . n B 2 6 DC 6 17 17 DC CYT E . n B 2 7 DC 7 18 18 DC CYT E . n B 2 8 DC 8 19 19 DC CYT E . n B 2 9 DC 9 20 20 DC CYT E . n B 2 10 DC 10 21 21 DC CYT E . n B 2 11 DA 11 22 22 DA ADE E . n C 3 1 ALA 1 2 2 ALA ALA A . n C 3 2 LYS 2 3 3 LYS LYS A . n C 3 3 LEU 3 4 4 LEU LEU A . n C 3 4 LEU 4 5 5 LEU LEU A . n C 3 5 ILE 5 6 6 ILE ILE A . n C 3 6 PRO 6 7 7 PRO PRO A . n C 3 7 GLN 7 8 8 GLN GLN A . n C 3 8 ALA 8 9 9 ALA ALA A . n C 3 9 ALA 9 10 10 ALA ALA A . n C 3 10 SER 10 11 11 SER SER A . n C 3 11 ALA 11 12 12 ALA ALA A . n C 3 12 ILE 12 13 13 ILE ILE A . n C 3 13 GLU 13 14 14 GLU GLU A . n C 3 14 GLN 14 15 15 GLN GLN A . n C 3 15 MET 15 16 16 MET MET A . n C 3 16 LYS 16 17 17 LYS LYS A . n C 3 17 LEU 17 18 18 LEU LEU A . n C 3 18 GLU 18 19 19 GLU GLU A . n C 3 19 ILE 19 20 20 ILE ILE A . n C 3 20 ALA 20 21 21 ALA ALA A . n C 3 21 SER 21 22 22 SER SER A . n C 3 22 GLU 22 23 23 GLU GLU A . n C 3 23 PHE 23 24 24 PHE PHE A . n C 3 24 GLY 24 25 25 GLY GLY A . n C 3 25 VAL 25 26 26 VAL VAL A . n C 3 26 GLN 26 27 27 GLN GLN A . n C 3 27 LEU 27 28 28 LEU LEU A . n C 3 28 GLY 28 29 29 GLY GLY A . n C 3 29 ALA 29 30 30 ALA ALA A . n C 3 30 GLU 30 31 31 GLU GLU A . n C 3 31 THR 31 32 32 THR THR A . n C 3 32 THR 32 33 33 THR THR A . n C 3 33 SER 33 34 34 SER SER A . n C 3 34 ARG 34 35 35 ARG ARG A . n C 3 35 ALA 35 36 36 ALA ALA A . n C 3 36 ASN 36 37 37 ASN ASN A . n C 3 37 GLY 37 38 38 GLY GLY A . n C 3 38 SER 38 39 39 SER SER A . n C 3 39 VAL 39 40 40 VAL VAL A . n C 3 40 GLY 40 41 41 GLY GLY A . n C 3 41 GLY 41 42 42 GLY GLY A . n C 3 42 GLU 42 43 43 GLU GLU A . n C 3 43 ILE 43 44 44 ILE ILE A . n C 3 44 THR 44 45 45 THR THR A . n C 3 45 LYS 45 46 46 LYS LYS A . n C 3 46 ARG 46 47 47 ARG ARG A . n C 3 47 LEU 47 48 48 LEU LEU A . n C 3 48 VAL 48 49 49 VAL VAL A . n C 3 49 ARG 49 50 50 ARG ARG A . n C 3 50 LEU 50 51 51 LEU LEU A . n C 3 51 ALA 51 52 52 ALA ALA A . n C 3 52 GLN 52 53 53 GLN GLN A . n C 3 53 GLN 53 54 54 GLN GLN A . n C 3 54 ASN 54 55 55 ASN ASN A . n C 3 55 MET 55 56 56 MET MET A . n C 3 56 GLY 56 57 57 GLY GLY A . n C 3 57 GLY 57 58 ? ? ? A . n C 3 58 GLN 58 59 ? ? ? A . n C 3 59 PHE 59 60 ? ? ? A . n C 3 60 HIS 60 61 ? ? ? A . n C 3 61 GLY 61 62 ? ? ? A . n C 3 62 GLN 62 63 ? ? ? A . n C 3 63 GLN 63 64 ? ? ? A . n D 3 1 ALA 1 2 2 ALA ALA B . n D 3 2 LYS 2 3 3 LYS LYS B . n D 3 3 LEU 3 4 4 LEU LEU B . n D 3 4 LEU 4 5 5 LEU LEU B . n D 3 5 ILE 5 6 6 ILE ILE B . n D 3 6 PRO 6 7 7 PRO PRO B . n D 3 7 GLN 7 8 8 GLN GLN B . n D 3 8 ALA 8 9 9 ALA ALA B . n D 3 9 ALA 9 10 10 ALA ALA B . n D 3 10 SER 10 11 11 SER SER B . n D 3 11 ALA 11 12 12 ALA ALA B . n D 3 12 ILE 12 13 13 ILE ILE B . n D 3 13 GLU 13 14 14 GLU GLU B . n D 3 14 GLN 14 15 15 GLN GLN B . n D 3 15 MET 15 16 16 MET MET B . n D 3 16 LYS 16 17 17 LYS LYS B . n D 3 17 LEU 17 18 18 LEU LEU B . n D 3 18 GLU 18 19 19 GLU GLU B . n D 3 19 ILE 19 20 20 ILE ILE B . n D 3 20 ALA 20 21 21 ALA ALA B . n D 3 21 SER 21 22 22 SER SER B . n D 3 22 GLU 22 23 23 GLU GLU B . n D 3 23 PHE 23 24 24 PHE PHE B . n D 3 24 GLY 24 25 25 GLY GLY B . n D 3 25 VAL 25 26 26 VAL VAL B . n D 3 26 GLN 26 27 27 GLN GLN B . n D 3 27 LEU 27 28 28 LEU LEU B . n D 3 28 GLY 28 29 29 GLY GLY B . n D 3 29 ALA 29 30 30 ALA ALA B . n D 3 30 GLU 30 31 31 GLU GLU B . n D 3 31 THR 31 32 32 THR THR B . n D 3 32 THR 32 33 33 THR THR B . n D 3 33 SER 33 34 34 SER SER B . n D 3 34 ARG 34 35 35 ARG ARG B . n D 3 35 ALA 35 36 36 ALA ALA B . n D 3 36 ASN 36 37 37 ASN ASN B . n D 3 37 GLY 37 38 38 GLY GLY B . n D 3 38 SER 38 39 39 SER SER B . n D 3 39 VAL 39 40 40 VAL VAL B . n D 3 40 GLY 40 41 41 GLY GLY B . n D 3 41 GLY 41 42 42 GLY GLY B . n D 3 42 GLU 42 43 43 GLU GLU B . n D 3 43 ILE 43 44 44 ILE ILE B . n D 3 44 THR 44 45 45 THR THR B . n D 3 45 LYS 45 46 46 LYS LYS B . n D 3 46 ARG 46 47 47 ARG ARG B . n D 3 47 LEU 47 48 48 LEU LEU B . n D 3 48 VAL 48 49 49 VAL VAL B . n D 3 49 ARG 49 50 50 ARG ARG B . n D 3 50 LEU 50 51 51 LEU LEU B . n D 3 51 ALA 51 52 52 ALA ALA B . n D 3 52 GLN 52 53 53 GLN GLN B . n D 3 53 GLN 53 54 54 GLN GLN B . n D 3 54 ASN 54 55 55 ASN ASN B . n D 3 55 MET 55 56 56 MET MET B . n D 3 56 GLY 56 57 57 GLY GLY B . n D 3 57 GLY 57 58 ? ? ? B . n D 3 58 GLN 58 59 ? ? ? B . n D 3 59 PHE 59 60 ? ? ? B . n D 3 60 HIS 60 61 ? ? ? B . n D 3 61 GLY 61 62 ? ? ? B . n D 3 62 GLN 62 63 ? ? ? B . n D 3 63 GLN 63 64 ? ? ? B . n E 3 1 ALA 1 2 2 ALA ALA C . n E 3 2 LYS 2 3 3 LYS LYS C . n E 3 3 LEU 3 4 4 LEU LEU C . n E 3 4 LEU 4 5 5 LEU LEU C . n E 3 5 ILE 5 6 6 ILE ILE C . n E 3 6 PRO 6 7 7 PRO PRO C . n E 3 7 GLN 7 8 8 GLN GLN C . n E 3 8 ALA 8 9 9 ALA ALA C . n E 3 9 ALA 9 10 10 ALA ALA C . n E 3 10 SER 10 11 11 SER SER C . n E 3 11 ALA 11 12 12 ALA ALA C . n E 3 12 ILE 12 13 13 ILE ILE C . n E 3 13 GLU 13 14 14 GLU GLU C . n E 3 14 GLN 14 15 15 GLN GLN C . n E 3 15 MET 15 16 16 MET MET C . n E 3 16 LYS 16 17 17 LYS LYS C . n E 3 17 LEU 17 18 18 LEU LEU C . n E 3 18 GLU 18 19 19 GLU GLU C . n E 3 19 ILE 19 20 20 ILE ILE C . n E 3 20 ALA 20 21 21 ALA ALA C . n E 3 21 SER 21 22 22 SER SER C . n E 3 22 GLU 22 23 23 GLU GLU C . n E 3 23 PHE 23 24 24 PHE PHE C . n E 3 24 GLY 24 25 25 GLY GLY C . n E 3 25 VAL 25 26 26 VAL VAL C . n E 3 26 GLN 26 27 27 GLN GLN C . n E 3 27 LEU 27 28 28 LEU LEU C . n E 3 28 GLY 28 29 29 GLY GLY C . n E 3 29 ALA 29 30 30 ALA ALA C . n E 3 30 GLU 30 31 31 GLU GLU C . n E 3 31 THR 31 32 32 THR THR C . n E 3 32 THR 32 33 33 THR THR C . n E 3 33 SER 33 34 34 SER SER C . n E 3 34 ARG 34 35 35 ARG ARG C . n E 3 35 ALA 35 36 36 ALA ALA C . n E 3 36 ASN 36 37 37 ASN ASN C . n E 3 37 GLY 37 38 38 GLY GLY C . n E 3 38 SER 38 39 39 SER SER C . n E 3 39 VAL 39 40 40 VAL VAL C . n E 3 40 GLY 40 41 41 GLY GLY C . n E 3 41 GLY 41 42 42 GLY GLY C . n E 3 42 GLU 42 43 43 GLU GLU C . n E 3 43 ILE 43 44 44 ILE ILE C . n E 3 44 THR 44 45 45 THR THR C . n E 3 45 LYS 45 46 46 LYS LYS C . n E 3 46 ARG 46 47 47 ARG ARG C . n E 3 47 LEU 47 48 48 LEU LEU C . n E 3 48 VAL 48 49 49 VAL VAL C . n E 3 49 ARG 49 50 50 ARG ARG C . n E 3 50 LEU 50 51 51 LEU LEU C . n E 3 51 ALA 51 52 52 ALA ALA C . n E 3 52 GLN 52 53 53 GLN GLN C . n E 3 53 GLN 53 54 54 GLN GLN C . n E 3 54 ASN 54 55 55 ASN ASN C . n E 3 55 MET 55 56 56 MET MET C . n E 3 56 GLY 56 57 57 GLY GLY C . n E 3 57 GLY 57 58 ? ? ? C . n E 3 58 GLN 58 59 ? ? ? C . n E 3 59 PHE 59 60 ? ? ? C . n E 3 60 HIS 60 61 ? ? ? C . n E 3 61 GLY 61 62 ? ? ? C . n E 3 62 GLN 62 63 ? ? ? C . n E 3 63 GLN 63 64 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 HOH 1 12 5 HOH HOH D . F 4 HOH 2 13 7 HOH HOH D . F 4 HOH 3 14 8 HOH HOH D . F 4 HOH 4 15 14 HOH HOH D . F 4 HOH 5 16 17 HOH HOH D . G 4 HOH 1 23 4 HOH HOH E . G 4 HOH 2 24 11 HOH HOH E . G 4 HOH 3 25 20 HOH HOH E . G 4 HOH 4 26 21 HOH HOH E . H 4 HOH 1 65 3 HOH HOH A . H 4 HOH 2 66 12 HOH HOH A . H 4 HOH 3 67 13 HOH HOH A . H 4 HOH 4 68 15 HOH HOH A . H 4 HOH 5 69 18 HOH HOH A . H 4 HOH 6 70 19 HOH HOH A . H 4 HOH 7 71 22 HOH HOH A . I 4 HOH 1 65 2 HOH HOH B . I 4 HOH 2 66 6 HOH HOH B . I 4 HOH 3 67 10 HOH HOH B . J 4 HOH 1 65 1 HOH HOH C . J 4 HOH 2 66 9 HOH HOH C . J 4 HOH 3 67 16 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language CNS refinement 1.1 ? 1 ? ? ? ? HKL-2000 'data collection' . ? 2 ? ? ? ? HKL-2000 'data reduction' . ? 3 ? ? ? ? SCALEPACK 'data scaling' . ? 4 ? ? ? ? SnB phasing . ? 5 ? ? ? ? # _cell.entry_id 2Z3X _cell.length_a 86.962 _cell.length_b 86.962 _cell.length_c 144.669 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Z3X _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2Z3X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.91 _exptl_crystal.density_percent_sol 57.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 281 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '0.01M magnesium sulfate, 0.05M sodium cacodylate, 1.4M ammonium sulfate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 281K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'magnesium sulfate' ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'ammonium sulfate' ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'magnesium sulfate' ? ? ? 1 6 2 'odium cacodylate' ? ? ? 1 7 2 'ammonium sulfate' ? ? ? 1 8 2 H2O ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id _diffrn.pdbx_serial_crystal_experiment 1 100 ? 1 ? 2 ? ? 1 ? # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 210' 2003-07-03 ? 2 CCD 'ADSC QUANTUM 210' 2003-07-03 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Double crystal, Si (111)' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Double crystal, Si (111)' MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.1000 1.0 2 0.9799 1.0 3 0.9800 1.0 4 0.9574 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ALS BEAMLINE 8.2.1' ALS 8.2.1 ? 1.1000 2 SYNCHROTRON 'ALS BEAMLINE 8.2.1' ALS 8.2.1 ? '0.9799, 0.9800, 0.9574' # _reflns.entry_id 2Z3X _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.1 _reflns.number_obs 17711 _reflns.number_all 18561 _reflns.percent_possible_obs 90.5 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_netI_over_sigmaI 15.9 _reflns.B_iso_Wilson_estimate 28.6 _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 59.4 _reflns_shell.Rmerge_I_obs 0.292 _reflns_shell.pdbx_Rsym_value 0.292 _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1144 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2Z3X _refine.ls_number_reflns_obs 17708 _refine.ls_number_reflns_all 18561 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 31089.69 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.93 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 90.7 _refine.ls_R_factor_obs 0.257 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.257 _refine.ls_R_factor_R_free 0.283 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 853 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 60.9 _refine.aniso_B[1][1] -11.18 _refine.aniso_B[2][2] -11.18 _refine.aniso_B[3][3] 22.36 _refine.aniso_B[1][2] -4.52 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.382571 _refine.solvent_model_param_bsol 56.4873 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2Z3X _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.50 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.41 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1230 _refine_hist.pdbx_number_atoms_nucleic_acid 446 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 1698 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 27.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.88 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1906 _refine_ls_shell.R_factor_R_work 0.42 _refine_ls_shell.percent_reflns_obs 63.2 _refine_ls_shell.R_factor_R_free 0.404 _refine_ls_shell.R_factor_R_free_error 0.039 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 105 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2019 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2Z3X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2Z3X _struct.title 'Structure of a Protein-DNA Complex Essential for DNA Protection in Spore of Bacillus Species' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z3X _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'alpha/beta-type SASP, Bacillus subtils spore, Protein-DNA complex, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SSPC_BACSU P02958 3 MAQQSRSRSNNNNDLLIPQAASAIEQMKLEIASEFGVQLGAETTSRANGSVGGEITKRLVRLAQQNMGGQFH 1 ? 2 PDB 2Z3X 2Z3X 1 ? ? ? 3 PDB 2Z3X 2Z3X 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Z3X A 1 ? 60 ? P02958 13 ? 72 ? 2 61 2 1 2Z3X B 1 ? 60 ? P02958 13 ? 72 ? 2 61 3 1 2Z3X C 1 ? 60 ? P02958 13 ? 72 ? 2 61 4 2 2Z3X D 1 ? 11 ? 2Z3X 1 ? 11 ? 1 11 5 3 2Z3X E 1 ? 11 ? 2Z3X 12 ? 22 ? 12 22 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Z3X ? A ? ? UNP P02958 MET 1 deletion ? 1 1 2Z3X ? A ? ? UNP P02958 ALA 2 deletion ? 2 1 2Z3X ? A ? ? UNP P02958 GLN 3 deletion ? 3 1 2Z3X ? A ? ? UNP P02958 GLN 4 deletion ? 4 1 2Z3X ? A ? ? UNP P02958 SER 5 deletion ? 5 1 2Z3X ? A ? ? UNP P02958 ARG 6 deletion ? 6 1 2Z3X ? A ? ? UNP P02958 SER 7 deletion ? 7 1 2Z3X ? A ? ? UNP P02958 ARG 8 deletion ? 8 1 2Z3X ? A ? ? UNP P02958 SER 9 deletion ? 9 1 2Z3X ? A ? ? UNP P02958 ASN 10 deletion ? 10 1 2Z3X ? A ? ? UNP P02958 ASN 11 deletion ? 11 1 2Z3X ? A ? ? UNP P02958 ASN 12 deletion ? 12 1 2Z3X ALA A 1 ? UNP P02958 ASN 13 'engineered mutation' 2 13 1 2Z3X LYS A 2 ? UNP P02958 ASP 14 'engineered mutation' 3 14 1 2Z3X GLY A 61 ? UNP P02958 ? ? 'expression tag' 62 15 1 2Z3X GLN A 62 ? UNP P02958 ? ? 'expression tag' 63 16 1 2Z3X GLN A 63 ? UNP P02958 ? ? 'expression tag' 64 17 2 2Z3X ? B ? ? UNP P02958 MET 1 deletion ? 18 2 2Z3X ? B ? ? UNP P02958 ALA 2 deletion ? 19 2 2Z3X ? B ? ? UNP P02958 GLN 3 deletion ? 20 2 2Z3X ? B ? ? UNP P02958 GLN 4 deletion ? 21 2 2Z3X ? B ? ? UNP P02958 SER 5 deletion ? 22 2 2Z3X ? B ? ? UNP P02958 ARG 6 deletion ? 23 2 2Z3X ? B ? ? UNP P02958 SER 7 deletion ? 24 2 2Z3X ? B ? ? UNP P02958 ARG 8 deletion ? 25 2 2Z3X ? B ? ? UNP P02958 SER 9 deletion ? 26 2 2Z3X ? B ? ? UNP P02958 ASN 10 deletion ? 27 2 2Z3X ? B ? ? UNP P02958 ASN 11 deletion ? 28 2 2Z3X ? B ? ? UNP P02958 ASN 12 deletion ? 29 2 2Z3X ALA B 1 ? UNP P02958 ASN 13 'engineered mutation' 2 30 2 2Z3X LYS B 2 ? UNP P02958 ASP 14 'engineered mutation' 3 31 2 2Z3X GLY B 61 ? UNP P02958 ? ? 'expression tag' 62 32 2 2Z3X GLN B 62 ? UNP P02958 ? ? 'expression tag' 63 33 2 2Z3X GLN B 63 ? UNP P02958 ? ? 'expression tag' 64 34 3 2Z3X ? C ? ? UNP P02958 MET 1 deletion ? 35 3 2Z3X ? C ? ? UNP P02958 ALA 2 deletion ? 36 3 2Z3X ? C ? ? UNP P02958 GLN 3 deletion ? 37 3 2Z3X ? C ? ? UNP P02958 GLN 4 deletion ? 38 3 2Z3X ? C ? ? UNP P02958 SER 5 deletion ? 39 3 2Z3X ? C ? ? UNP P02958 ARG 6 deletion ? 40 3 2Z3X ? C ? ? UNP P02958 SER 7 deletion ? 41 3 2Z3X ? C ? ? UNP P02958 ARG 8 deletion ? 42 3 2Z3X ? C ? ? UNP P02958 SER 9 deletion ? 43 3 2Z3X ? C ? ? UNP P02958 ASN 10 deletion ? 44 3 2Z3X ? C ? ? UNP P02958 ASN 11 deletion ? 45 3 2Z3X ? C ? ? UNP P02958 ASN 12 deletion ? 46 3 2Z3X ALA C 1 ? UNP P02958 ASN 13 'engineered mutation' 2 47 3 2Z3X LYS C 2 ? UNP P02958 ASP 14 'engineered mutation' 3 48 3 2Z3X GLY C 61 ? UNP P02958 ? ? 'expression tag' 62 49 3 2Z3X GLN C 62 ? UNP P02958 ? ? 'expression tag' 63 50 3 2Z3X GLN C 63 ? UNP P02958 ? ? 'expression tag' 64 51 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE C 5 ? GLN C 7 ? ILE A 6 GLN A 8 5 ? 3 HELX_P HELX_P2 2 ALA C 8 ? GLY C 24 ? ALA A 9 GLY A 25 1 ? 17 HELX_P HELX_P3 3 THR C 32 ? ASN C 54 ? THR A 33 ASN A 55 1 ? 23 HELX_P HELX_P4 4 ILE D 5 ? GLN D 7 ? ILE B 6 GLN B 8 5 ? 3 HELX_P HELX_P5 5 ALA D 8 ? GLY D 24 ? ALA B 9 GLY B 25 1 ? 17 HELX_P HELX_P6 6 THR D 32 ? ASN D 54 ? THR B 33 ASN B 55 1 ? 23 HELX_P HELX_P7 7 ILE E 5 ? GLN E 7 ? ILE C 6 GLN C 8 5 ? 3 HELX_P HELX_P8 8 ALA E 8 ? GLY E 24 ? ALA C 9 GLY C 25 1 ? 17 HELX_P HELX_P9 9 THR E 32 ? ASN E 54 ? THR C 33 ASN C 55 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? D DG 1 E DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? D DG 1 E DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? D DG 1 E DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? D DG 2 E DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? D DG 2 E DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? D DG 2 E DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? D DG 3 E DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? D DG 3 E DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? D DG 3 E DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? D DG 4 E DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? D DG 4 E DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? D DG 4 E DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? D DG 5 E DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? D DG 5 E DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? D DG 5 E DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 5 N3 ? ? D DG 6 E DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 5 O2 ? ? D DG 6 E DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 5 N4 ? ? D DG 6 E DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? D DG 7 E DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? D DG 7 E DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? D DG 7 E DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 3 N3 ? ? D DG 8 E DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 3 O2 ? ? D DG 8 E DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 3 N4 ? ? D DG 8 E DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? D DG 9 E DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? D DG 9 E DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? D DG 9 E DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? D DG 10 E DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? D DG 10 E DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? D DG 10 E DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N1 _pdbx_validate_symm_contact.auth_asym_id_1 D _pdbx_validate_symm_contact.auth_comp_id_1 DA _pdbx_validate_symm_contact.auth_seq_id_1 11 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 N1 _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 DA _pdbx_validate_symm_contact.auth_seq_id_2 11 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 12_566 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 56 ? ? -172.06 -48.42 2 1 LYS B 3 ? ? -46.71 104.90 3 1 ASN B 55 ? ? -76.14 34.32 4 1 LEU C 28 ? ? -60.11 95.37 5 1 ASN C 55 ? ? -84.12 35.74 6 1 MET C 56 ? ? -149.46 -20.58 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 58 ? C GLY 57 2 1 Y 1 A GLN 59 ? C GLN 58 3 1 Y 1 A PHE 60 ? C PHE 59 4 1 Y 1 A HIS 61 ? C HIS 60 5 1 Y 1 A GLY 62 ? C GLY 61 6 1 Y 1 A GLN 63 ? C GLN 62 7 1 Y 1 A GLN 64 ? C GLN 63 8 1 Y 1 B GLY 58 ? D GLY 57 9 1 Y 1 B GLN 59 ? D GLN 58 10 1 Y 1 B PHE 60 ? D PHE 59 11 1 Y 1 B HIS 61 ? D HIS 60 12 1 Y 1 B GLY 62 ? D GLY 61 13 1 Y 1 B GLN 63 ? D GLN 62 14 1 Y 1 B GLN 64 ? D GLN 63 15 1 Y 1 C GLY 58 ? E GLY 57 16 1 Y 1 C GLN 59 ? E GLN 58 17 1 Y 1 C PHE 60 ? E PHE 59 18 1 Y 1 C HIS 61 ? E HIS 60 19 1 Y 1 C GLY 62 ? E GLY 61 20 1 Y 1 C GLN 63 ? E GLN 62 21 1 Y 1 C GLN 64 ? E GLN 63 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 GLN N N N N 181 GLN CA C N S 182 GLN C C N N 183 GLN O O N N 184 GLN CB C N N 185 GLN CG C N N 186 GLN CD C N N 187 GLN OE1 O N N 188 GLN NE2 N N N 189 GLN OXT O N N 190 GLN H H N N 191 GLN H2 H N N 192 GLN HA H N N 193 GLN HB2 H N N 194 GLN HB3 H N N 195 GLN HG2 H N N 196 GLN HG3 H N N 197 GLN HE21 H N N 198 GLN HE22 H N N 199 GLN HXT H N N 200 GLU N N N N 201 GLU CA C N S 202 GLU C C N N 203 GLU O O N N 204 GLU CB C N N 205 GLU CG C N N 206 GLU CD C N N 207 GLU OE1 O N N 208 GLU OE2 O N N 209 GLU OXT O N N 210 GLU H H N N 211 GLU H2 H N N 212 GLU HA H N N 213 GLU HB2 H N N 214 GLU HB3 H N N 215 GLU HG2 H N N 216 GLU HG3 H N N 217 GLU HE2 H N N 218 GLU HXT H N N 219 GLY N N N N 220 GLY CA C N N 221 GLY C C N N 222 GLY O O N N 223 GLY OXT O N N 224 GLY H H N N 225 GLY H2 H N N 226 GLY HA2 H N N 227 GLY HA3 H N N 228 GLY HXT H N N 229 HIS N N N N 230 HIS CA C N S 231 HIS C C N N 232 HIS O O N N 233 HIS CB C N N 234 HIS CG C Y N 235 HIS ND1 N Y N 236 HIS CD2 C Y N 237 HIS CE1 C Y N 238 HIS NE2 N Y N 239 HIS OXT O N N 240 HIS H H N N 241 HIS H2 H N N 242 HIS HA H N N 243 HIS HB2 H N N 244 HIS HB3 H N N 245 HIS HD1 H N N 246 HIS HD2 H N N 247 HIS HE1 H N N 248 HIS HE2 H N N 249 HIS HXT H N N 250 HOH O O N N 251 HOH H1 H N N 252 HOH H2 H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 PHE N N N N 343 PHE CA C N S 344 PHE C C N N 345 PHE O O N N 346 PHE CB C N N 347 PHE CG C Y N 348 PHE CD1 C Y N 349 PHE CD2 C Y N 350 PHE CE1 C Y N 351 PHE CE2 C Y N 352 PHE CZ C Y N 353 PHE OXT O N N 354 PHE H H N N 355 PHE H2 H N N 356 PHE HA H N N 357 PHE HB2 H N N 358 PHE HB3 H N N 359 PHE HD1 H N N 360 PHE HD2 H N N 361 PHE HE1 H N N 362 PHE HE2 H N N 363 PHE HZ H N N 364 PHE HXT H N N 365 PRO N N N N 366 PRO CA C N S 367 PRO C C N N 368 PRO O O N N 369 PRO CB C N N 370 PRO CG C N N 371 PRO CD C N N 372 PRO OXT O N N 373 PRO H H N N 374 PRO HA H N N 375 PRO HB2 H N N 376 PRO HB3 H N N 377 PRO HG2 H N N 378 PRO HG3 H N N 379 PRO HD2 H N N 380 PRO HD3 H N N 381 PRO HXT H N N 382 SER N N N N 383 SER CA C N S 384 SER C C N N 385 SER O O N N 386 SER CB C N N 387 SER OG O N N 388 SER OXT O N N 389 SER H H N N 390 SER H2 H N N 391 SER HA H N N 392 SER HB2 H N N 393 SER HB3 H N N 394 SER HG H N N 395 SER HXT H N N 396 THR N N N N 397 THR CA C N S 398 THR C C N N 399 THR O O N N 400 THR CB C N R 401 THR OG1 O N N 402 THR CG2 C N N 403 THR OXT O N N 404 THR H H N N 405 THR H2 H N N 406 THR HA H N N 407 THR HB H N N 408 THR HG1 H N N 409 THR HG21 H N N 410 THR HG22 H N N 411 THR HG23 H N N 412 THR HXT H N N 413 VAL N N N N 414 VAL CA C N S 415 VAL C C N N 416 VAL O O N N 417 VAL CB C N N 418 VAL CG1 C N N 419 VAL CG2 C N N 420 VAL OXT O N N 421 VAL H H N N 422 VAL H2 H N N 423 VAL HA H N N 424 VAL HB H N N 425 VAL HG11 H N N 426 VAL HG12 H N N 427 VAL HG13 H N N 428 VAL HG21 H N N 429 VAL HG22 H N N 430 VAL HG23 H N N 431 VAL HXT H N N 432 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 GLN N CA sing N N 182 GLN N H sing N N 183 GLN N H2 sing N N 184 GLN CA C sing N N 185 GLN CA CB sing N N 186 GLN CA HA sing N N 187 GLN C O doub N N 188 GLN C OXT sing N N 189 GLN CB CG sing N N 190 GLN CB HB2 sing N N 191 GLN CB HB3 sing N N 192 GLN CG CD sing N N 193 GLN CG HG2 sing N N 194 GLN CG HG3 sing N N 195 GLN CD OE1 doub N N 196 GLN CD NE2 sing N N 197 GLN NE2 HE21 sing N N 198 GLN NE2 HE22 sing N N 199 GLN OXT HXT sing N N 200 GLU N CA sing N N 201 GLU N H sing N N 202 GLU N H2 sing N N 203 GLU CA C sing N N 204 GLU CA CB sing N N 205 GLU CA HA sing N N 206 GLU C O doub N N 207 GLU C OXT sing N N 208 GLU CB CG sing N N 209 GLU CB HB2 sing N N 210 GLU CB HB3 sing N N 211 GLU CG CD sing N N 212 GLU CG HG2 sing N N 213 GLU CG HG3 sing N N 214 GLU CD OE1 doub N N 215 GLU CD OE2 sing N N 216 GLU OE2 HE2 sing N N 217 GLU OXT HXT sing N N 218 GLY N CA sing N N 219 GLY N H sing N N 220 GLY N H2 sing N N 221 GLY CA C sing N N 222 GLY CA HA2 sing N N 223 GLY CA HA3 sing N N 224 GLY C O doub N N 225 GLY C OXT sing N N 226 GLY OXT HXT sing N N 227 HIS N CA sing N N 228 HIS N H sing N N 229 HIS N H2 sing N N 230 HIS CA C sing N N 231 HIS CA CB sing N N 232 HIS CA HA sing N N 233 HIS C O doub N N 234 HIS C OXT sing N N 235 HIS CB CG sing N N 236 HIS CB HB2 sing N N 237 HIS CB HB3 sing N N 238 HIS CG ND1 sing Y N 239 HIS CG CD2 doub Y N 240 HIS ND1 CE1 doub Y N 241 HIS ND1 HD1 sing N N 242 HIS CD2 NE2 sing Y N 243 HIS CD2 HD2 sing N N 244 HIS CE1 NE2 sing Y N 245 HIS CE1 HE1 sing N N 246 HIS NE2 HE2 sing N N 247 HIS OXT HXT sing N N 248 HOH O H1 sing N N 249 HOH O H2 sing N N 250 ILE N CA sing N N 251 ILE N H sing N N 252 ILE N H2 sing N N 253 ILE CA C sing N N 254 ILE CA CB sing N N 255 ILE CA HA sing N N 256 ILE C O doub N N 257 ILE C OXT sing N N 258 ILE CB CG1 sing N N 259 ILE CB CG2 sing N N 260 ILE CB HB sing N N 261 ILE CG1 CD1 sing N N 262 ILE CG1 HG12 sing N N 263 ILE CG1 HG13 sing N N 264 ILE CG2 HG21 sing N N 265 ILE CG2 HG22 sing N N 266 ILE CG2 HG23 sing N N 267 ILE CD1 HD11 sing N N 268 ILE CD1 HD12 sing N N 269 ILE CD1 HD13 sing N N 270 ILE OXT HXT sing N N 271 LEU N CA sing N N 272 LEU N H sing N N 273 LEU N H2 sing N N 274 LEU CA C sing N N 275 LEU CA CB sing N N 276 LEU CA HA sing N N 277 LEU C O doub N N 278 LEU C OXT sing N N 279 LEU CB CG sing N N 280 LEU CB HB2 sing N N 281 LEU CB HB3 sing N N 282 LEU CG CD1 sing N N 283 LEU CG CD2 sing N N 284 LEU CG HG sing N N 285 LEU CD1 HD11 sing N N 286 LEU CD1 HD12 sing N N 287 LEU CD1 HD13 sing N N 288 LEU CD2 HD21 sing N N 289 LEU CD2 HD22 sing N N 290 LEU CD2 HD23 sing N N 291 LEU OXT HXT sing N N 292 LYS N CA sing N N 293 LYS N H sing N N 294 LYS N H2 sing N N 295 LYS CA C sing N N 296 LYS CA CB sing N N 297 LYS CA HA sing N N 298 LYS C O doub N N 299 LYS C OXT sing N N 300 LYS CB CG sing N N 301 LYS CB HB2 sing N N 302 LYS CB HB3 sing N N 303 LYS CG CD sing N N 304 LYS CG HG2 sing N N 305 LYS CG HG3 sing N N 306 LYS CD CE sing N N 307 LYS CD HD2 sing N N 308 LYS CD HD3 sing N N 309 LYS CE NZ sing N N 310 LYS CE HE2 sing N N 311 LYS CE HE3 sing N N 312 LYS NZ HZ1 sing N N 313 LYS NZ HZ2 sing N N 314 LYS NZ HZ3 sing N N 315 LYS OXT HXT sing N N 316 MET N CA sing N N 317 MET N H sing N N 318 MET N H2 sing N N 319 MET CA C sing N N 320 MET CA CB sing N N 321 MET CA HA sing N N 322 MET C O doub N N 323 MET C OXT sing N N 324 MET CB CG sing N N 325 MET CB HB2 sing N N 326 MET CB HB3 sing N N 327 MET CG SD sing N N 328 MET CG HG2 sing N N 329 MET CG HG3 sing N N 330 MET SD CE sing N N 331 MET CE HE1 sing N N 332 MET CE HE2 sing N N 333 MET CE HE3 sing N N 334 MET OXT HXT sing N N 335 PHE N CA sing N N 336 PHE N H sing N N 337 PHE N H2 sing N N 338 PHE CA C sing N N 339 PHE CA CB sing N N 340 PHE CA HA sing N N 341 PHE C O doub N N 342 PHE C OXT sing N N 343 PHE CB CG sing N N 344 PHE CB HB2 sing N N 345 PHE CB HB3 sing N N 346 PHE CG CD1 doub Y N 347 PHE CG CD2 sing Y N 348 PHE CD1 CE1 sing Y N 349 PHE CD1 HD1 sing N N 350 PHE CD2 CE2 doub Y N 351 PHE CD2 HD2 sing N N 352 PHE CE1 CZ doub Y N 353 PHE CE1 HE1 sing N N 354 PHE CE2 CZ sing Y N 355 PHE CE2 HE2 sing N N 356 PHE CZ HZ sing N N 357 PHE OXT HXT sing N N 358 PRO N CA sing N N 359 PRO N CD sing N N 360 PRO N H sing N N 361 PRO CA C sing N N 362 PRO CA CB sing N N 363 PRO CA HA sing N N 364 PRO C O doub N N 365 PRO C OXT sing N N 366 PRO CB CG sing N N 367 PRO CB HB2 sing N N 368 PRO CB HB3 sing N N 369 PRO CG CD sing N N 370 PRO CG HG2 sing N N 371 PRO CG HG3 sing N N 372 PRO CD HD2 sing N N 373 PRO CD HD3 sing N N 374 PRO OXT HXT sing N N 375 SER N CA sing N N 376 SER N H sing N N 377 SER N H2 sing N N 378 SER CA C sing N N 379 SER CA CB sing N N 380 SER CA HA sing N N 381 SER C O doub N N 382 SER C OXT sing N N 383 SER CB OG sing N N 384 SER CB HB2 sing N N 385 SER CB HB3 sing N N 386 SER OG HG sing N N 387 SER OXT HXT sing N N 388 THR N CA sing N N 389 THR N H sing N N 390 THR N H2 sing N N 391 THR CA C sing N N 392 THR CA CB sing N N 393 THR CA HA sing N N 394 THR C O doub N N 395 THR C OXT sing N N 396 THR CB OG1 sing N N 397 THR CB CG2 sing N N 398 THR CB HB sing N N 399 THR OG1 HG1 sing N N 400 THR CG2 HG21 sing N N 401 THR CG2 HG22 sing N N 402 THR CG2 HG23 sing N N 403 THR OXT HXT sing N N 404 VAL N CA sing N N 405 VAL N H sing N N 406 VAL N H2 sing N N 407 VAL CA C sing N N 408 VAL CA CB sing N N 409 VAL CA HA sing N N 410 VAL C O doub N N 411 VAL C OXT sing N N 412 VAL CB CG1 sing N N 413 VAL CB CG2 sing N N 414 VAL CB HB sing N N 415 VAL CG1 HG11 sing N N 416 VAL CG1 HG12 sing N N 417 VAL CG1 HG13 sing N N 418 VAL CG2 HG21 sing N N 419 VAL CG2 HG22 sing N N 420 VAL CG2 HG23 sing N N 421 VAL OXT HXT sing N N 422 # _ndb_struct_conf_na.entry_id 2Z3X _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.198 -0.173 -0.424 -8.121 2.646 -2.308 1 D_DG1:DC21_E D 1 ? E 21 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 -0.238 -0.067 -0.531 -9.950 -3.321 1.884 2 D_DG2:DC20_E D 2 ? E 20 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.065 -0.147 -0.209 0.575 -3.713 -0.121 3 D_DG3:DC19_E D 3 ? E 19 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.183 -0.124 -0.175 -7.971 -11.496 3.935 4 D_DG4:DC18_E D 4 ? E 18 ? 19 1 1 A DG 5 1_555 B DC 6 1_555 -0.177 -0.088 -0.387 -13.560 -9.959 0.390 5 D_DG5:DC17_E D 5 ? E 17 ? 19 1 1 A DG 6 1_555 B DC 5 1_555 -0.297 -0.133 0.034 -8.645 -11.476 -0.306 6 D_DG6:DC16_E D 6 ? E 16 ? 19 1 1 A DG 7 1_555 B DC 4 1_555 -0.267 -0.155 -0.422 -10.917 -7.749 0.027 7 D_DG7:DC15_E D 7 ? E 15 ? 19 1 1 A DG 8 1_555 B DC 3 1_555 -0.209 -0.154 -0.332 -7.201 -6.901 -0.523 8 D_DG8:DC14_E D 8 ? E 14 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.204 -0.113 -0.085 -10.978 -10.464 0.872 9 D_DG9:DC13_E D 9 ? E 13 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.109 -0.121 -0.065 -3.895 -16.803 1.853 10 D_DG10:DC12_E D 10 ? E 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DG 2 1_555 B DC 9 1_555 0.503 -1.426 3.605 1.481 3.910 32.428 -3.265 -0.616 3.433 6.966 -2.638 32.689 1 DD_DG1DG2:DC20DC21_EE D 1 ? E 21 ? D 2 ? E 20 ? 1 A DG 2 1_555 B DC 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.357 -0.971 3.140 -2.474 2.576 31.305 -2.246 0.219 3.070 4.754 4.565 31.503 2 DD_DG2DG3:DC19DC20_EE D 2 ? E 20 ? D 3 ? E 19 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 0.570 -1.229 3.568 0.062 4.105 31.821 -3.012 -1.020 3.388 7.448 -0.113 32.078 3 DD_DG3DG4:DC18DC19_EE D 3 ? E 19 ? D 4 ? E 18 ? 1 A DG 4 1_555 B DC 7 1_555 A DG 5 1_555 B DC 6 1_555 -0.411 -1.274 3.538 0.455 4.194 33.762 -2.886 0.780 3.354 7.187 -0.780 34.017 4 DD_DG4DG5:DC17DC18_EE D 4 ? E 18 ? D 5 ? E 17 ? 1 A DG 5 1_555 B DC 6 1_555 A DG 6 1_555 B DC 5 1_555 0.356 -1.420 3.107 -3.616 6.599 31.070 -3.657 -1.237 2.699 12.099 6.629 31.946 5 DD_DG5DG6:DC16DC17_EE D 5 ? E 17 ? D 6 ? E 16 ? 1 A DG 6 1_555 B DC 5 1_555 A DG 7 1_555 B DC 4 1_555 -0.788 -2.241 3.401 1.967 5.669 28.566 -5.641 1.978 2.853 11.330 -3.932 29.177 6 DD_DG6DG7:DC15DC16_EE D 6 ? E 16 ? D 7 ? E 15 ? 1 A DG 7 1_555 B DC 4 1_555 A DG 8 1_555 B DC 3 1_555 0.070 -1.273 3.303 -1.130 11.132 28.339 -4.519 -0.345 2.623 21.698 2.202 30.425 7 DD_DG7DG8:DC14DC15_EE D 7 ? E 15 ? D 8 ? E 14 ? 1 A DG 8 1_555 B DC 3 1_555 A DG 9 1_555 B DC 2 1_555 0.819 -2.048 3.412 0.073 9.784 28.191 -5.903 -1.578 2.574 19.363 -0.144 29.808 8 DD_DG8DG9:DC13DC14_EE D 8 ? E 14 ? D 9 ? E 13 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.236 -0.804 3.121 0.538 5.685 36.660 -1.976 0.438 2.964 8.971 -0.849 37.087 9 DD_DG9DG10:DC12DC13_EE D 9 ? E 13 ? D 10 ? E 12 ? # _atom_sites.entry_id 2Z3X _atom_sites.fract_transf_matrix[1][1] 0.011499 _atom_sites.fract_transf_matrix[1][2] 0.006639 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013278 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006912 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_