HEADER TRANSFERASE 29-JUL-07 2Z6C TITLE CRYSTAL STRUCTURE OF LOV1 DOMAIN OF PHOTOTROPIN1 FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOTROPIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 180-308, LOV1 DOMAIN; COMPND 5 SYNONYM: NON-PHOTOTROPIC HYPOCOTYL PROTEIN 1, ROOT PHOTOTROPISM COMPND 6 PROTEIN 1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PHOT1, JK224, NPH1, RPT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PAS-FOLD, LOV-FOLD, ATP-BINDING, CHROMOPHORE, CYTOPLASM, KEYWDS 2 FLAVOPROTEIN, FMN, KINASE, MEMBRANE, NUCLEOTIDE-BINDING, KEYWDS 3 PHOSPHORYLATION, PHOTORECEPTOR PROTEIN, RECEPTOR, SENSORY KEYWDS 4 TRANSDUCTION, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.NAKASAKO,D.MATSUOKA,S.TOKUTOMI REVDAT 5 20-NOV-24 2Z6C 1 REMARK REVDAT 4 01-NOV-23 2Z6C 1 REMARK REVDAT 3 24-FEB-09 2Z6C 1 VERSN REVDAT 2 30-SEP-08 2Z6C 1 JRNL REVDAT 1 29-JUL-08 2Z6C 0 JRNL AUTH M.NAKASAKO,K.ZIKIHARA,D.MATSUOKA,H.KATSURA,S.TOKUTOMI JRNL TITL STRUCTURAL BASIS OF THE LOV1 DIMERIZATION OF ARABIDOPSIS JRNL TITL 2 PHOTOTROPINS 1 AND 2 JRNL REF J.MOL.BIOL. V. 381 718 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18585389 JRNL DOI 10.1016/J.JMB.2008.06.033 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.NAKASAKO,M.HIRATA,N.SHIMIZU,S.HOSOKAWA,D.MATSUOKA,T.OKA, REMARK 1 AUTH 2 M.YAMAMOTO,S.TOKUTOMI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF THE LOV1 DOMAINS OF PHOTOTROPIN 1 AND 2 FROM ARABIDOPSIS REMARK 1 TITL 3 THALIANA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 64 617 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18607090 REMARK 1 DOI 10.1107/S1744309108015534 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.NAKASAKO,T.IWATA,D.MATSUOKA,S.TOKUTOMI REMARK 1 TITL LIGHT-INDUCED STRUCTURAL CHANGES OF LOV DOMAIN-CONTAINING REMARK 1 TITL 2 POLYPEPTIDES FROM ARABIDOPSIS PHOTOTROPIN 1 AND 2 STUDIED BY REMARK 1 TITL 3 SMALL-ANGLE X-RAY SCATTERING REMARK 1 REF BIOCHEMISTRY V. 43 14881 2004 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 15554695 REMARK 1 DOI 10.1021/BI0485530 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.NAKASAKO,D.MATSUOKA,K.ZIKIHARA,S.TOKUTOMI REMARK 1 TITL QUATERNARY STRUCTURE OF LOV-DOMAIN CONTAINING POLYPEPTIDE OF REMARK 1 TITL 2 ARABIDOPSIS FKF1 PROTEIN REMARK 1 REF FEBS LETT. V. 579 1067 2005 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 15710392 REMARK 1 DOI 10.1016/J.FEBSLET.2004.12.078 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 855 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.211 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.128 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1979 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2680 ; 1.725 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 7.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;29.764 ;24.762 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;16.541 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.965 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 294 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1456 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 857 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1361 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.112 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1238 ; 1.288 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1918 ; 2.039 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 934 ; 2.626 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 762 ; 3.890 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z6C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000027576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MONOCHROMETER/FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16967 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 41.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1N9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.40500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.40500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 180 REMARK 465 ILE A 181 REMARK 465 PRO A 182 REMARK 465 ARG A 183 REMARK 465 GLU A 305 REMARK 465 GLY A 306 REMARK 465 ALA A 307 REMARK 465 LYS A 308 REMARK 465 GLY B 180 REMARK 465 ILE B 181 REMARK 465 PRO B 182 REMARK 465 ARG B 183 REMARK 465 GLU B 305 REMARK 465 GLY B 306 REMARK 465 ALA B 307 REMARK 465 LYS B 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 578 O HOH B 533 1.81 REMARK 500 OG SER B 226 O HOH B 514 1.82 REMARK 500 O HOH A 578 O HOH B 532 2.00 REMARK 500 O HOH B 514 O HOH B 549 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 285 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL B 298 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 192 54.79 -107.35 REMARK 500 PHE A 195 55.71 -102.04 REMARK 500 TYR A 209 56.10 37.45 REMARK 500 ASN A 258 -144.95 -106.00 REMARK 500 ASP A 270 -34.60 -39.41 REMARK 500 CYS B 234 0.06 -69.10 REMARK 500 ASN B 258 -156.78 -96.96 REMARK 500 LYS B 302 111.67 151.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 184 SER B 185 -143.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 500 DBREF 2Z6C A 180 308 UNP O48963 PHOT1_ARATH 180 308 DBREF 2Z6C B 180 308 UNP O48963 PHOT1_ARATH 180 308 SEQRES 1 A 129 GLY ILE PRO ARG VAL SER GLU ASP LEU LYS ASP ALA LEU SEQRES 2 A 129 SER THR PHE GLN GLN THR PHE VAL VAL SER ASP ALA THR SEQRES 3 A 129 LYS PRO ASP TYR PRO ILE MET TYR ALA SER ALA GLY PHE SEQRES 4 A 129 PHE ASN MET THR GLY TYR THR SER LYS GLU VAL VAL GLY SEQRES 5 A 129 ARG ASN CYS ARG PHE LEU GLN GLY SER GLY THR ASP ALA SEQRES 6 A 129 ASP GLU LEU ALA LYS ILE ARG GLU THR LEU ALA ALA GLY SEQRES 7 A 129 ASN ASN TYR CYS GLY ARG ILE LEU ASN TYR LYS LYS ASP SEQRES 8 A 129 GLY THR SER PHE TRP ASN LEU LEU THR ILE ALA PRO ILE SEQRES 9 A 129 LYS ASP GLU SER GLY LYS VAL LEU LYS PHE ILE GLY MET SEQRES 10 A 129 GLN VAL GLU VAL SER LYS HIS THR GLU GLY ALA LYS SEQRES 1 B 129 GLY ILE PRO ARG VAL SER GLU ASP LEU LYS ASP ALA LEU SEQRES 2 B 129 SER THR PHE GLN GLN THR PHE VAL VAL SER ASP ALA THR SEQRES 3 B 129 LYS PRO ASP TYR PRO ILE MET TYR ALA SER ALA GLY PHE SEQRES 4 B 129 PHE ASN MET THR GLY TYR THR SER LYS GLU VAL VAL GLY SEQRES 5 B 129 ARG ASN CYS ARG PHE LEU GLN GLY SER GLY THR ASP ALA SEQRES 6 B 129 ASP GLU LEU ALA LYS ILE ARG GLU THR LEU ALA ALA GLY SEQRES 7 B 129 ASN ASN TYR CYS GLY ARG ILE LEU ASN TYR LYS LYS ASP SEQRES 8 B 129 GLY THR SER PHE TRP ASN LEU LEU THR ILE ALA PRO ILE SEQRES 9 B 129 LYS ASP GLU SER GLY LYS VAL LEU LYS PHE ILE GLY MET SEQRES 10 B 129 GLN VAL GLU VAL SER LYS HIS THR GLU GLY ALA LYS HET FMN A 500 31 HET FMN B 500 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *140(H2 O) HELIX 1 1 SER A 185 LEU A 192 1 8 HELIX 2 2 GLY A 217 GLY A 223 1 7 HELIX 3 3 ASN A 233 GLN A 238 5 6 HELIX 4 4 ASP A 243 GLY A 257 1 15 HELIX 5 5 VAL B 184 PHE B 195 1 12 HELIX 6 6 ALA B 216 GLY B 223 1 8 HELIX 7 7 THR B 225 VAL B 230 1 6 HELIX 8 8 ASN B 233 GLN B 238 5 6 HELIX 9 9 ASP B 243 GLY B 257 1 15 SHEET 1 A 5 ILE A 211 ALA A 214 0 SHEET 2 A 5 GLN A 197 ASP A 203 -1 N VAL A 201 O MET A 212 SHEET 3 A 5 VAL A 290 VAL A 300 -1 O GLN A 297 N THR A 198 SHEET 4 A 5 SER A 273 LYS A 284 -1 N LEU A 277 O VAL A 298 SHEET 5 A 5 TYR A 260 TYR A 267 -1 N TYR A 260 O ILE A 280 SHEET 1 B 5 ILE B 211 ALA B 214 0 SHEET 2 B 5 THR B 198 ASP B 203 -1 N VAL B 201 O MET B 212 SHEET 3 B 5 VAL B 290 VAL B 300 -1 O PHE B 293 N SER B 202 SHEET 4 B 5 SER B 273 LYS B 284 -1 N LEU B 277 O VAL B 298 SHEET 5 B 5 TYR B 260 TYR B 267 -1 N TYR B 260 O ILE B 280 SSBOND 1 CYS A 261 CYS B 261 1555 1555 2.08 SITE 1 AC1 17 SER A 202 ASN A 233 CYS A 234 ARG A 235 SITE 2 AC1 17 LEU A 237 GLN A 238 LEU A 247 ILE A 250 SITE 3 AC1 17 ARG A 251 LEU A 254 ILE A 264 ASN A 266 SITE 4 AC1 17 ASN A 276 LEU A 278 PHE A 293 GLY A 295 SITE 5 AC1 17 GLN A 297 SITE 1 AC2 16 SER B 202 ASN B 233 CYS B 234 ARG B 235 SITE 2 AC2 16 LEU B 237 GLN B 238 LEU B 247 ARG B 251 SITE 3 AC2 16 LEU B 254 ILE B 264 ASN B 266 ASN B 276 SITE 4 AC2 16 LEU B 278 PHE B 293 GLY B 295 GLN B 297 CRYST1 61.150 64.920 70.810 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016353 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014122 0.00000