HEADER TRANSFERASE 05-SEP-07 2Z8J TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI GAMMA-GLUTAMYLTRANSPEPTIDASE IN TITLE 2 COMPLEX WITH AZASERINE PREPARED IN THE DARK CAVEAT 2Z8J CHIRALITY ERROR AT THE CA CENTER OF THR B 391. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-GLUTAMYLTRANSPEPTIDASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: LARGE CHAIN; COMPND 5 EC: 2.3.2.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GAMMA-GLUTAMYLTRANSPEPTIDASE; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: SMALL CHAIN; COMPND 11 EC: 2.3.2.2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSH253; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 STRAIN: K-12; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PSH253 KEYWDS AZASERINE WITH A DIAZO GROUP, COVALENT BOND WITH THR391, KEYWDS 2 ACYLTRANSFERASE, GLUTATHIONE BIOSYNTHESIS, TRANSFERASE, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR K.WADA,M.IRIE,K.FUKUYAMA REVDAT 5 16-OCT-24 2Z8J 1 REMARK REVDAT 4 01-NOV-23 2Z8J 1 REMARK LINK REVDAT 3 04-APR-12 2Z8J 1 JRNL VERSN REVDAT 2 24-FEB-09 2Z8J 1 VERSN REVDAT 1 24-JUN-08 2Z8J 0 JRNL AUTH K.WADA,J.HIRATAKE,M.IRIE,T.OKADA,C.YAMADA,H.KUMAGAI, JRNL AUTH 2 H.SUZUKI,K.FUKUYAMA JRNL TITL CRYSTAL STRUCTURES OF ESCHERICHIA COLI JRNL TITL 2 GAMMA-GLUTAMYLTRANSPEPTIDASE IN COMPLEX WITH AZASERINE AND JRNL TITL 3 ACIVICIN: NOVEL MECHANISTIC IMPLICATION FOR INHIBITION BY JRNL TITL 4 GLUTAMINE ANTAGONISTS JRNL REF J.MOL.BIOL. V. 380 361 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18555071 JRNL DOI 10.1016/J.JMB.2008.05.007 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 78582.090 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 77422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3925 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11855 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 615 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8118 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.40000 REMARK 3 B22 (A**2) : -5.10000 REMARK 3 B33 (A**2) : -4.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 51.27 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : AZS.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GGT_FINAL.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000027655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78471 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2DBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5-17.5% PEG 4000, 0.2M CACL2, 0.1M REMARK 280 TRIS-HCL, PH 8.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.13000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.13000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 PRO A 31 REMARK 465 VAL A 32 REMARK 465 SER A 33 REMARK 465 TYR A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 GLU A 37 REMARK 465 SER A 388 REMARK 465 ASN A 389 REMARK 465 GLN A 390 REMARK 465 ALA C 25 REMARK 465 ALA C 26 REMARK 465 PRO C 27 REMARK 465 PRO C 28 REMARK 465 ALA C 29 REMARK 465 PRO C 30 REMARK 465 PRO C 31 REMARK 465 VAL C 32 REMARK 465 SER C 33 REMARK 465 TYR C 34 REMARK 465 GLY C 35 REMARK 465 VAL C 36 REMARK 465 GLU C 37 REMARK 465 SER C 388 REMARK 465 ASN C 389 REMARK 465 GLN C 390 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR B 391 C THR B 391 O 0.197 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 391 N - CA - CB ANGL. DEV. = 13.1 DEGREES REMARK 500 THR B 391 CA - C - O ANGL. DEV. = -13.0 DEGREES REMARK 500 THR B 391 CA - C - N ANGL. DEV. = 21.1 DEGREES REMARK 500 THR D 391 CA - CB - CG2 ANGL. DEV. = -18.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 90 -36.72 -138.58 REMARK 500 ASP A 128 -166.21 -79.87 REMARK 500 VAL A 198 -46.52 -135.96 REMARK 500 LYS A 244 -31.40 -137.32 REMARK 500 LYS A 371 134.91 -174.05 REMARK 500 GLU A 377 35.57 -90.35 REMARK 500 PRO A 385 12.63 -66.98 REMARK 500 ASN B 411 -103.49 96.83 REMARK 500 ASN B 457 14.85 57.80 REMARK 500 TRP B 518 -59.63 70.94 REMARK 500 SER B 552 78.91 -156.26 REMARK 500 ASP C 39 64.25 69.04 REMARK 500 ALA C 90 -37.60 -143.25 REMARK 500 ASN C 107 106.80 -59.00 REMARK 500 VAL C 198 -46.86 -137.15 REMARK 500 PRO C 293 7.23 -61.51 REMARK 500 SER C 319 140.08 -39.65 REMARK 500 GLU C 339 -67.78 -102.23 REMARK 500 GLN C 366 0.48 -61.93 REMARK 500 PRO C 380 107.75 -55.01 REMARK 500 ALA C 384 -50.35 -28.56 REMARK 500 PRO C 385 9.65 -68.61 REMARK 500 ASN D 411 -101.01 90.75 REMARK 500 SER D 481 159.53 179.65 REMARK 500 HIS D 516 97.83 -178.69 REMARK 500 GLN D 517 30.28 -96.31 REMARK 500 TRP D 518 -66.85 68.35 REMARK 500 GLU D 522 126.16 174.68 REMARK 500 LEU D 536 -38.02 -39.92 REMARK 500 SER D 552 81.84 -155.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZS B 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZS D 390 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z8I RELATED DB: PDB REMARK 900 THE SAME PROTEIN-INHIBITOR COMPLEX PREPARED IN DAYLIGHT REMARK 900 RELATED ID: 2Z8K RELATED DB: PDB DBREF 2Z8J A 25 390 UNP P18956 GGT_ECOLI 25 390 DBREF 2Z8J B 391 580 UNP P18956 GGT_ECOLI 391 580 DBREF 2Z8J C 25 390 UNP P18956 GGT_ECOLI 25 390 DBREF 2Z8J D 391 580 UNP P18956 GGT_ECOLI 391 580 SEQRES 1 A 366 ALA ALA PRO PRO ALA PRO PRO VAL SER TYR GLY VAL GLU SEQRES 2 A 366 GLU ASP VAL PHE HIS PRO VAL ARG ALA LYS GLN GLY MET SEQRES 3 A 366 VAL ALA SER VAL ASP ALA THR ALA THR GLN VAL GLY VAL SEQRES 4 A 366 ASP ILE LEU LYS GLU GLY GLY ASN ALA VAL ASP ALA ALA SEQRES 5 A 366 VAL ALA VAL GLY TYR ALA LEU ALA VAL THR HIS PRO GLN SEQRES 6 A 366 ALA GLY ASN LEU GLY GLY GLY GLY PHE MET LEU ILE ARG SEQRES 7 A 366 SER LYS ASN GLY ASN THR THR ALA ILE ASP PHE ARG GLU SEQRES 8 A 366 MET ALA PRO ALA LYS ALA THR ARG ASP MET PHE LEU ASP SEQRES 9 A 366 ASP GLN GLY ASN PRO ASP SER LYS LYS SER LEU THR SER SEQRES 10 A 366 HIS LEU ALA SER GLY THR PRO GLY THR VAL ALA GLY PHE SEQRES 11 A 366 SER LEU ALA LEU ASP LYS TYR GLY THR MET PRO LEU ASN SEQRES 12 A 366 LYS VAL VAL GLN PRO ALA PHE LYS LEU ALA ARG ASP GLY SEQRES 13 A 366 PHE ILE VAL ASN ASP ALA LEU ALA ASP ASP LEU LYS THR SEQRES 14 A 366 TYR GLY SER GLU VAL LEU PRO ASN HIS GLU ASN SER LYS SEQRES 15 A 366 ALA ILE PHE TRP LYS GLU GLY GLU PRO LEU LYS LYS GLY SEQRES 16 A 366 ASP THR LEU VAL GLN ALA ASN LEU ALA LYS SER LEU GLU SEQRES 17 A 366 MET ILE ALA GLU ASN GLY PRO ASP GLU PHE TYR LYS GLY SEQRES 18 A 366 THR ILE ALA GLU GLN ILE ALA GLN GLU MET GLN LYS ASN SEQRES 19 A 366 GLY GLY LEU ILE THR LYS GLU ASP LEU ALA ALA TYR LYS SEQRES 20 A 366 ALA VAL GLU ARG THR PRO ILE SER GLY ASP TYR ARG GLY SEQRES 21 A 366 TYR GLN VAL TYR SER MET PRO PRO PRO SER SER GLY GLY SEQRES 22 A 366 ILE HIS ILE VAL GLN ILE LEU ASN ILE LEU GLU ASN PHE SEQRES 23 A 366 ASP MET LYS LYS TYR GLY PHE GLY SER ALA ASP ALA MET SEQRES 24 A 366 GLN ILE MET ALA GLU ALA GLU LYS TYR ALA TYR ALA ASP SEQRES 25 A 366 ARG SER GLU TYR LEU GLY ASP PRO ASP PHE VAL LYS VAL SEQRES 26 A 366 PRO TRP GLN ALA LEU THR ASN LYS ALA TYR ALA LYS SER SEQRES 27 A 366 ILE ALA ASP GLN ILE ASP ILE ASN LYS ALA LYS PRO SER SEQRES 28 A 366 SER GLU ILE ARG PRO GLY LYS LEU ALA PRO TYR GLU SER SEQRES 29 A 366 ASN GLN SEQRES 1 B 190 THR THR HIS TYR SER VAL VAL ASP LYS ASP GLY ASN ALA SEQRES 2 B 190 VAL ALA VAL THR TYR THR LEU ASN THR THR PHE GLY THR SEQRES 3 B 190 GLY ILE VAL ALA GLY GLU SER GLY ILE LEU LEU ASN ASN SEQRES 4 B 190 GLN MET ASP ASP PHE SER ALA LYS PRO GLY VAL PRO ASN SEQRES 5 B 190 VAL TYR GLY LEU VAL GLY GLY ASP ALA ASN ALA VAL GLY SEQRES 6 B 190 PRO ASN LYS ARG PRO LEU SER SER MET SER PRO THR ILE SEQRES 7 B 190 VAL VAL LYS ASP GLY LYS THR TRP LEU VAL THR GLY SER SEQRES 8 B 190 PRO GLY GLY SER ARG ILE ILE THR THR VAL LEU GLN MET SEQRES 9 B 190 VAL VAL ASN SER ILE ASP TYR GLY LEU ASN VAL ALA GLU SEQRES 10 B 190 ALA THR ASN ALA PRO ARG PHE HIS HIS GLN TRP LEU PRO SEQRES 11 B 190 ASP GLU LEU ARG VAL GLU LYS GLY PHE SER PRO ASP THR SEQRES 12 B 190 LEU LYS LEU LEU GLU ALA LYS GLY GLN LYS VAL ALA LEU SEQRES 13 B 190 LYS GLU ALA MET GLY SER THR GLN SER ILE MET VAL GLY SEQRES 14 B 190 PRO ASP GLY GLU LEU TYR GLY ALA SER ASP PRO ARG SER SEQRES 15 B 190 VAL ASP ASP LEU THR ALA GLY TYR SEQRES 1 C 366 ALA ALA PRO PRO ALA PRO PRO VAL SER TYR GLY VAL GLU SEQRES 2 C 366 GLU ASP VAL PHE HIS PRO VAL ARG ALA LYS GLN GLY MET SEQRES 3 C 366 VAL ALA SER VAL ASP ALA THR ALA THR GLN VAL GLY VAL SEQRES 4 C 366 ASP ILE LEU LYS GLU GLY GLY ASN ALA VAL ASP ALA ALA SEQRES 5 C 366 VAL ALA VAL GLY TYR ALA LEU ALA VAL THR HIS PRO GLN SEQRES 6 C 366 ALA GLY ASN LEU GLY GLY GLY GLY PHE MET LEU ILE ARG SEQRES 7 C 366 SER LYS ASN GLY ASN THR THR ALA ILE ASP PHE ARG GLU SEQRES 8 C 366 MET ALA PRO ALA LYS ALA THR ARG ASP MET PHE LEU ASP SEQRES 9 C 366 ASP GLN GLY ASN PRO ASP SER LYS LYS SER LEU THR SER SEQRES 10 C 366 HIS LEU ALA SER GLY THR PRO GLY THR VAL ALA GLY PHE SEQRES 11 C 366 SER LEU ALA LEU ASP LYS TYR GLY THR MET PRO LEU ASN SEQRES 12 C 366 LYS VAL VAL GLN PRO ALA PHE LYS LEU ALA ARG ASP GLY SEQRES 13 C 366 PHE ILE VAL ASN ASP ALA LEU ALA ASP ASP LEU LYS THR SEQRES 14 C 366 TYR GLY SER GLU VAL LEU PRO ASN HIS GLU ASN SER LYS SEQRES 15 C 366 ALA ILE PHE TRP LYS GLU GLY GLU PRO LEU LYS LYS GLY SEQRES 16 C 366 ASP THR LEU VAL GLN ALA ASN LEU ALA LYS SER LEU GLU SEQRES 17 C 366 MET ILE ALA GLU ASN GLY PRO ASP GLU PHE TYR LYS GLY SEQRES 18 C 366 THR ILE ALA GLU GLN ILE ALA GLN GLU MET GLN LYS ASN SEQRES 19 C 366 GLY GLY LEU ILE THR LYS GLU ASP LEU ALA ALA TYR LYS SEQRES 20 C 366 ALA VAL GLU ARG THR PRO ILE SER GLY ASP TYR ARG GLY SEQRES 21 C 366 TYR GLN VAL TYR SER MET PRO PRO PRO SER SER GLY GLY SEQRES 22 C 366 ILE HIS ILE VAL GLN ILE LEU ASN ILE LEU GLU ASN PHE SEQRES 23 C 366 ASP MET LYS LYS TYR GLY PHE GLY SER ALA ASP ALA MET SEQRES 24 C 366 GLN ILE MET ALA GLU ALA GLU LYS TYR ALA TYR ALA ASP SEQRES 25 C 366 ARG SER GLU TYR LEU GLY ASP PRO ASP PHE VAL LYS VAL SEQRES 26 C 366 PRO TRP GLN ALA LEU THR ASN LYS ALA TYR ALA LYS SER SEQRES 27 C 366 ILE ALA ASP GLN ILE ASP ILE ASN LYS ALA LYS PRO SER SEQRES 28 C 366 SER GLU ILE ARG PRO GLY LYS LEU ALA PRO TYR GLU SER SEQRES 29 C 366 ASN GLN SEQRES 1 D 190 THR THR HIS TYR SER VAL VAL ASP LYS ASP GLY ASN ALA SEQRES 2 D 190 VAL ALA VAL THR TYR THR LEU ASN THR THR PHE GLY THR SEQRES 3 D 190 GLY ILE VAL ALA GLY GLU SER GLY ILE LEU LEU ASN ASN SEQRES 4 D 190 GLN MET ASP ASP PHE SER ALA LYS PRO GLY VAL PRO ASN SEQRES 5 D 190 VAL TYR GLY LEU VAL GLY GLY ASP ALA ASN ALA VAL GLY SEQRES 6 D 190 PRO ASN LYS ARG PRO LEU SER SER MET SER PRO THR ILE SEQRES 7 D 190 VAL VAL LYS ASP GLY LYS THR TRP LEU VAL THR GLY SER SEQRES 8 D 190 PRO GLY GLY SER ARG ILE ILE THR THR VAL LEU GLN MET SEQRES 9 D 190 VAL VAL ASN SER ILE ASP TYR GLY LEU ASN VAL ALA GLU SEQRES 10 D 190 ALA THR ASN ALA PRO ARG PHE HIS HIS GLN TRP LEU PRO SEQRES 11 D 190 ASP GLU LEU ARG VAL GLU LYS GLY PHE SER PRO ASP THR SEQRES 12 D 190 LEU LYS LEU LEU GLU ALA LYS GLY GLN LYS VAL ALA LEU SEQRES 13 D 190 LYS GLU ALA MET GLY SER THR GLN SER ILE MET VAL GLY SEQRES 14 D 190 PRO ASP GLY GLU LEU TYR GLY ALA SER ASP PRO ARG SER SEQRES 15 D 190 VAL ASP ASP LEU THR ALA GLY TYR HET AZS B 390 12 HET AZS D 390 12 HETNAM AZS O-DIAZOACETYL-L-SERINE HETSYN AZS ASASERINE FORMUL 5 AZS 2(C5 H7 N3 O4) FORMUL 7 HOH *413(H2 O) HELIX 1 1 ASP A 55 GLU A 68 1 14 HELIX 2 2 ASN A 71 HIS A 87 1 17 HELIX 3 3 ASP A 134 THR A 140 1 7 HELIX 4 4 SER A 141 SER A 145 5 5 HELIX 5 5 GLY A 149 GLY A 162 1 14 HELIX 6 6 PRO A 165 GLY A 180 1 16 HELIX 7 7 ASN A 184 TYR A 194 1 11 HELIX 8 8 GLY A 195 ASN A 201 5 7 HELIX 9 9 HIS A 202 PHE A 209 1 8 HELIX 10 10 GLN A 224 GLY A 238 1 15 HELIX 11 11 PRO A 239 LYS A 244 1 6 HELIX 12 12 GLY A 245 LYS A 257 1 13 HELIX 13 13 THR A 263 ALA A 269 1 7 HELIX 14 14 SER A 295 ASN A 309 1 15 HELIX 15 15 ASP A 311 GLY A 316 1 6 HELIX 16 16 SER A 319 LEU A 341 1 23 HELIX 17 17 PRO A 350 THR A 355 1 6 HELIX 18 18 ASN A 356 GLN A 366 1 11 HELIX 19 19 PRO A 374 ILE A 378 5 5 HELIX 20 20 LEU A 383 GLU A 387 5 5 HELIX 21 21 ASN B 429 PHE B 434 5 6 HELIX 22 22 GLY B 483 SER B 485 5 3 HELIX 23 23 ARG B 486 ASP B 500 1 15 HELIX 24 24 ASN B 504 ALA B 511 1 8 HELIX 25 25 SER B 530 GLY B 541 1 12 HELIX 26 26 ASP C 55 GLU C 68 1 14 HELIX 27 27 ASN C 71 HIS C 87 1 17 HELIX 28 28 ASP C 134 THR C 140 1 7 HELIX 29 29 SER C 141 SER C 145 5 5 HELIX 30 30 GLY C 149 GLY C 162 1 14 HELIX 31 31 PRO C 165 GLY C 180 1 16 HELIX 32 32 ASN C 184 TYR C 194 1 11 HELIX 33 33 TYR C 194 LEU C 199 1 6 HELIX 34 34 HIS C 202 PHE C 209 1 8 HELIX 35 35 GLN C 224 GLY C 238 1 15 HELIX 36 36 PRO C 239 LYS C 244 1 6 HELIX 37 37 GLY C 245 ASN C 258 1 14 HELIX 38 38 THR C 263 TYR C 270 1 8 HELIX 39 39 GLY C 296 GLU C 308 1 13 HELIX 40 40 ASP C 311 GLY C 316 1 6 HELIX 41 41 SER C 319 LEU C 341 1 23 HELIX 42 42 PRO C 350 THR C 355 1 6 HELIX 43 43 ASN C 356 ILE C 367 1 12 HELIX 44 44 PRO C 374 ILE C 378 5 5 HELIX 45 45 ALA D 420 GLY D 424 5 5 HELIX 46 46 ASN D 429 PHE D 434 5 6 HELIX 47 47 GLY D 483 SER D 485 5 3 HELIX 48 48 ARG D 486 ASP D 500 1 15 HELIX 49 49 ASN D 504 ALA D 511 1 8 HELIX 50 50 SER D 530 ALA D 539 1 10 SHEET 1 A 7 VAL A 44 ALA A 46 0 SHEET 2 A 7 LEU B 564 SER B 568 -1 O GLY B 566 N VAL A 44 SHEET 3 A 7 GLN B 554 VAL B 558 -1 N MET B 557 O TYR B 565 SHEET 4 A 7 LYS B 474 THR B 479 -1 N VAL B 478 O ILE B 556 SHEET 5 A 7 THR B 467 LYS B 471 -1 N THR B 467 O THR B 479 SHEET 6 A 7 TYR A 285 SER A 289 -1 N GLN A 286 O VAL B 470 SHEET 7 A 7 ILE A 278 TYR A 282 -1 N TYR A 282 O TYR A 285 SHEET 1 B 7 VAL A 273 ARG A 275 0 SHEET 2 B 7 THR A 108 PHE A 113 -1 N ALA A 110 O ARG A 275 SHEET 3 B 7 GLY A 96 ARG A 102 -1 N MET A 99 O ILE A 111 SHEET 4 B 7 ALA B 403 THR B 409 -1 O THR B 409 N GLY A 96 SHEET 5 B 7 THR B 392 VAL B 397 -1 N TYR B 394 O VAL B 406 SHEET 6 B 7 MET A 50 SER A 53 -1 N ALA A 52 O SER B 395 SHEET 7 B 7 LEU B 576 GLY B 579 -1 O ALA B 578 N VAL A 51 SHEET 1 C 2 PHE A 181 ILE A 182 0 SHEET 2 C 2 THR A 221 LEU A 222 -1 O LEU A 222 N PHE A 181 SHEET 1 D 2 TRP A 210 LYS A 211 0 SHEET 2 D 2 GLU A 214 PRO A 215 -1 O GLU A 214 N LYS A 211 SHEET 1 E 2 ILE B 418 VAL B 419 0 SHEET 2 E 2 LEU B 426 LEU B 427 -1 O LEU B 427 N ILE B 418 SHEET 1 F 3 PHE B 514 HIS B 515 0 SHEET 2 F 3 LEU B 523 VAL B 525 -1 O ARG B 524 N HIS B 515 SHEET 3 F 3 VAL B 544 LEU B 546 1 O ALA B 545 N LEU B 523 SHEET 1 G 7 VAL C 44 ALA C 46 0 SHEET 2 G 7 LEU D 564 SER D 568 -1 O LEU D 564 N ALA C 46 SHEET 3 G 7 GLN D 554 VAL D 558 -1 N MET D 557 O TYR D 565 SHEET 4 G 7 LYS D 474 THR D 479 -1 N VAL D 478 O ILE D 556 SHEET 5 G 7 THR D 467 LYS D 471 -1 N LYS D 471 O LYS D 474 SHEET 6 G 7 TYR C 285 SER C 289 -1 N GLN C 286 O VAL D 470 SHEET 7 G 7 ILE C 278 TYR C 282 -1 N TYR C 282 O TYR C 285 SHEET 1 H 7 VAL C 273 ARG C 275 0 SHEET 2 H 7 THR C 108 PHE C 113 -1 N ASP C 112 O VAL C 273 SHEET 3 H 7 GLY C 96 ARG C 102 -1 N ILE C 101 O THR C 109 SHEET 4 H 7 ALA D 403 THR D 409 -1 O ALA D 405 N LEU C 100 SHEET 5 H 7 THR D 392 VAL D 397 -1 N TYR D 394 O VAL D 406 SHEET 6 H 7 GLY C 49 SER C 53 -1 N ALA C 52 O SER D 395 SHEET 7 H 7 LEU D 576 TYR D 580 -1 O ALA D 578 N VAL C 51 SHEET 1 I 2 PHE C 181 ILE C 182 0 SHEET 2 I 2 THR C 221 LEU C 222 -1 O LEU C 222 N PHE C 181 SHEET 1 J 2 TRP C 210 LYS C 211 0 SHEET 2 J 2 GLU C 214 PRO C 215 -1 O GLU C 214 N LYS C 211 SHEET 1 K 3 PHE D 514 HIS D 515 0 SHEET 2 K 3 ARG D 524 VAL D 525 -1 O ARG D 524 N HIS D 515 SHEET 3 K 3 ALA D 545 LEU D 546 1 O ALA D 545 N VAL D 525 LINK CH AZS B 390 OG1 THR B 391 1555 1555 1.43 LINK CH AZS D 390 OG1 THR D 391 1555 1555 1.43 CISPEP 1 PRO A 292 PRO A 293 0 1.78 CISPEP 2 LEU B 519 PRO B 520 0 -0.34 CISPEP 3 PRO C 292 PRO C 293 0 2.23 CISPEP 4 LEU D 519 PRO D 520 0 -0.19 SITE 1 AC1 14 ARG A 114 THR B 391 ASN B 411 GLN B 430 SITE 2 AC1 14 ASP B 433 TYR B 444 SER B 462 SER B 463 SITE 3 AC1 14 MET B 464 PRO B 482 GLY B 483 GLY B 484 SITE 4 AC1 14 HOH B 596 HOH B 641 SITE 1 AC2 14 ARG C 114 THR D 391 THR D 409 ASN D 411 SITE 2 AC2 14 GLN D 430 ASP D 433 TYR D 444 SER D 462 SITE 3 AC2 14 SER D 463 MET D 464 GLY D 483 GLY D 484 SITE 4 AC2 14 HOH D 586 HOH D 608 CRYST1 76.260 126.800 128.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007806 0.00000