HEADER IMMUNE SYSTEM 14-SEP-07 2Z93 TITLE CRYSTAL STRUCTURE OF FAB FRAGMENT OF ANTI-CIGUATOXIN ANTIBODY 10C9 IN TITLE 2 COMPLEX WITH CTX3C-ABCD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-CIGUATOXIN ANTIBODY 10C9 FAB HEAVY CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-CIGUATOXIN ANTIBODY 10C9 FAB LIGHT CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: HYBRIDOMA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 CELL_LINE: HYBRIDOMA KEYWDS IMMUNOGLOBURIN LIKE FOLD, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.UI,Y.TANAKA,K.TSUMOTO REVDAT 5 01-NOV-23 2Z93 1 REMARK REVDAT 4 11-OCT-17 2Z93 1 REMARK REVDAT 3 24-FEB-09 2Z93 1 VERSN REVDAT 2 22-JUL-08 2Z93 1 JRNL REVDAT 1 06-MAY-08 2Z93 0 JRNL AUTH M.UI,Y.TANAKA,T.TSUMURAYA,I.FUJII,M.INOUE,M.HIRAMA,K.TSUMOTO JRNL TITL HOW PROTEIN RECOGNIZES LADDER-LIKE POLYCYCLIC ETHERS: JRNL TITL 2 INTERACTIONS BETWEEN CIGUATOXIN (CTX3C) FRAGMENTS AND ITS JRNL TITL 3 SPECIFIC ANTIBODY 10C9 JRNL REF J.BIOL.CHEM. V. 283 19440 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18463096 JRNL DOI 10.1074/JBC.M801282200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1384755.010 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.297 REMARK 3 FREE R VALUE : 0.340 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3396 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4992 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 545 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.59000 REMARK 3 B22 (A**2) : 19.23000 REMARK 3 B33 (A**2) : -3.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.900 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.420 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 44.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DFOBS:CTOX.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DFOBS:CTOX.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000027675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35513 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Z92 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 0.2M AMMONIUM REMARK 280 SULFATE, 30% PEG MME 2000, PH4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.70500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 0 REMARK 465 LEU A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 PRO A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 LYS A 10 REMARK 465 PRO A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 LEU A 17 REMARK 465 THR A 18 REMARK 465 CYS A 19 REMARK 465 THR A 20 REMARK 465 VAL A 21 REMARK 465 THR A 22 REMARK 465 GLY A 23 REMARK 465 TYR A 24 REMARK 465 SER A 25 REMARK 465 ILE A 26 REMARK 465 THR A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 TYR A 30 REMARK 465 ASN A 31 REMARK 465 TRP A 32 REMARK 465 HIS A 33 REMARK 465 TRP A 34 REMARK 465 ILE A 35 REMARK 465 ARG A 36 REMARK 465 GLN A 37 REMARK 465 PHE A 38 REMARK 465 PRO A 39 REMARK 465 GLY A 40 REMARK 465 ASN A 41 REMARK 465 LYS A 42 REMARK 465 LEU A 43 REMARK 465 GLU A 44 REMARK 465 TRP A 45 REMARK 465 MET A 46 REMARK 465 GLY A 47 REMARK 465 TYR A 48 REMARK 465 ILE A 49 REMARK 465 HIS A 50 REMARK 465 TYR A 51 REMARK 465 ARG A 52 REMARK 465 GLY A 53 REMARK 465 THR A 54 REMARK 465 THR A 55 REMARK 465 ASN A 56 REMARK 465 TYR A 57 REMARK 465 ASN A 58 REMARK 465 THR A 59 REMARK 465 SER A 60 REMARK 465 LEU A 61 REMARK 465 LYS A 62 REMARK 465 SER A 63 REMARK 465 ARG A 64 REMARK 465 ILE A 65 REMARK 465 SER A 66 REMARK 465 ILE A 67 REMARK 465 THR A 68 REMARK 465 ARG A 69 REMARK 465 ASP A 70 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 LYS A 73 REMARK 465 ASN A 74 REMARK 465 GLN A 75 REMARK 465 PHE A 76 REMARK 465 PHE A 77 REMARK 465 LEU A 78 REMARK 465 GLN A 79 REMARK 465 LEU A 80 REMARK 465 ASN A 81 REMARK 465 SER A 82 REMARK 465 VAL A 83 REMARK 465 THR A 84 REMARK 465 THR A 85 REMARK 465 GLU A 86 REMARK 465 ASP A 87 REMARK 465 THR A 88 REMARK 465 ALA A 89 REMARK 465 THR A 90 REMARK 465 TYR A 91 REMARK 465 TYR A 92 REMARK 465 CYS A 93 REMARK 465 ALA A 94 REMARK 465 CYS A 95 REMARK 465 ASP A 96 REMARK 465 ASP A 97 REMARK 465 PHE A 98 REMARK 465 TYR A 99 REMARK 465 SER A 100 REMARK 465 ASP A 101 REMARK 465 TYR A 102 REMARK 465 TRP A 103 REMARK 465 GLY A 104 REMARK 465 GLN A 105 REMARK 465 GLY A 106 REMARK 465 THR A 107 REMARK 465 ILE A 108 REMARK 465 VAL A 109 REMARK 465 THR A 110 REMARK 465 VAL A 111 REMARK 465 SER A 112 REMARK 465 SER A 113 REMARK 465 ALA A 114 REMARK 465 LYS A 115 REMARK 465 ALA A 130 REMARK 465 GLN A 131 REMARK 465 THR A 132 REMARK 465 ASN A 133 REMARK 465 SER A 134 REMARK 465 MET A 135 REMARK 465 SER A 158 REMARK 465 LEU A 159 REMARK 465 SER A 160 REMARK 465 SER A 161 REMARK 465 GLY A 162 REMARK 465 PRO A 184 REMARK 465 SER A 185 REMARK 465 SER A 186 REMARK 465 THR A 187 REMARK 465 TRP A 188 REMARK 465 ARG A 213 REMARK 465 ASP A 214 REMARK 465 CYS A 215 REMARK 465 THR A 216 REMARK 465 SER A 217 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 VAL B 4 REMARK 465 MET B 5 REMARK 465 THR B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 PRO B 9 REMARK 465 ALA B 10 REMARK 465 ILE B 11 REMARK 465 MET B 12 REMARK 465 SER B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 PRO B 16 REMARK 465 GLY B 17 REMARK 465 GLU B 18 REMARK 465 LYS B 19 REMARK 465 VAL B 20 REMARK 465 THR B 21 REMARK 465 MET B 22 REMARK 465 THR B 23 REMARK 465 CYS B 24 REMARK 465 SER B 25 REMARK 465 ALA B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 VAL B 30 REMARK 465 SER B 31 REMARK 465 SER B 32 REMARK 465 VAL B 33 REMARK 465 HIS B 34 REMARK 465 TRP B 35 REMARK 465 TYR B 36 REMARK 465 GLN B 37 REMARK 465 GLN B 38 REMARK 465 LYS B 39 REMARK 465 SER B 40 REMARK 465 GLY B 41 REMARK 465 THR B 42 REMARK 465 SER B 43 REMARK 465 PRO B 44 REMARK 465 LYS B 45 REMARK 465 ARG B 46 REMARK 465 TRP B 47 REMARK 465 ILE B 48 REMARK 465 TYR B 49 REMARK 465 ASP B 50 REMARK 465 THR B 51 REMARK 465 SER B 52 REMARK 465 LYS B 53 REMARK 465 LEU B 54 REMARK 465 PRO B 55 REMARK 465 SER B 56 REMARK 465 GLY B 57 REMARK 465 VAL B 58 REMARK 465 PRO B 59 REMARK 465 GLY B 60 REMARK 465 ARG B 61 REMARK 465 PHE B 62 REMARK 465 SER B 63 REMARK 465 GLY B 64 REMARK 465 SER B 65 REMARK 465 GLY B 66 REMARK 465 SER B 67 REMARK 465 GLY B 68 REMARK 465 THR B 69 REMARK 465 SER B 70 REMARK 465 TYR B 71 REMARK 465 SER B 72 REMARK 465 LEU B 73 REMARK 465 THR B 74 REMARK 465 ILE B 75 REMARK 465 SER B 76 REMARK 465 SER B 77 REMARK 465 MET B 78 REMARK 465 GLU B 79 REMARK 465 ALA B 80 REMARK 465 GLU B 81 REMARK 465 ASP B 82 REMARK 465 ALA B 83 REMARK 465 ALA B 84 REMARK 465 THR B 85 REMARK 465 TYR B 86 REMARK 465 TYR B 87 REMARK 465 CYS B 88 REMARK 465 GLN B 89 REMARK 465 GLN B 90 REMARK 465 TRP B 91 REMARK 465 SER B 92 REMARK 465 SER B 93 REMARK 465 ASN B 94 REMARK 465 PRO B 95 REMARK 465 PRO B 96 REMARK 465 THR B 97 REMARK 465 PHE B 98 REMARK 465 GLY B 99 REMARK 465 ALA B 100 REMARK 465 GLY B 101 REMARK 465 THR B 102 REMARK 465 LYS B 103 REMARK 465 LEU B 104 REMARK 465 GLU B 105 REMARK 465 VAL B 106 REMARK 465 LYS B 107 REMARK 465 ARG B 108 REMARK 465 ALA B 109 REMARK 465 ASP B 110 REMARK 465 ALA B 111 REMARK 465 ASN B 137 REMARK 465 ASN B 138 REMARK 465 PHE B 139 REMARK 465 TYR B 140 REMARK 465 ASP B 165 REMARK 465 GLN B 166 REMARK 465 ASP B 167 REMARK 465 SER B 168 REMARK 465 LYS B 169 REMARK 465 ASP B 170 REMARK 465 SER B 171 REMARK 465 THR B 172 REMARK 465 TYR B 173 REMARK 465 SER B 174 REMARK 465 HIS B 198 REMARK 465 LYS B 199 REMARK 465 THR B 200 REMARK 465 SER B 201 REMARK 465 THR B 202 REMARK 465 SER B 203 REMARK 465 PRO B 204 REMARK 465 GLU B 213 REMARK 465 CYS B 214 REMARK 465 GLY C 127 REMARK 465 SER C 128 REMARK 465 ALA C 129 REMARK 465 ALA C 130 REMARK 465 GLN C 131 REMARK 465 THR C 132 REMARK 465 ASN C 133 REMARK 465 SER C 134 REMARK 465 MET C 135 REMARK 465 VAL C 136 REMARK 465 PRO C 184 REMARK 465 SER C 185 REMARK 465 SER C 186 REMARK 465 ASP C 214 REMARK 465 CYS C 215 REMARK 465 THR C 216 REMARK 465 SER C 217 REMARK 465 ILE D 150 REMARK 465 ASP D 151 REMARK 465 GLY D 152 REMARK 465 SER D 153 REMARK 465 GLU D 154 REMARK 465 ARG D 155 REMARK 465 GLN D 156 REMARK 465 THR D 180 REMARK 465 LEU D 181 REMARK 465 THR D 182 REMARK 465 LYS D 183 REMARK 465 ASP D 184 REMARK 465 GLU D 185 REMARK 465 TYR D 186 REMARK 465 GLU D 187 REMARK 465 ARG D 188 REMARK 465 HIS D 189 REMARK 465 ASN D 190 REMARK 465 SER D 191 REMARK 465 TYR D 192 REMARK 465 VAL D 206 REMARK 465 LYS D 207 REMARK 465 SER D 208 REMARK 465 PHE D 209 REMARK 465 ASN D 210 REMARK 465 ARG D 211 REMARK 465 ASN D 212 REMARK 465 GLU D 213 REMARK 465 CYS D 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS C 92 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 128 84.33 1.92 REMARK 500 PRO A 147 -166.14 -101.66 REMARK 500 PRO A 149 -166.62 -103.83 REMARK 500 ASN A 155 38.62 29.08 REMARK 500 ASP A 173 16.15 84.64 REMARK 500 SER C 15 -21.16 80.32 REMARK 500 TYR C 33 163.41 74.17 REMARK 500 ASN C 43 4.20 80.82 REMARK 500 THR C 70 -169.98 -118.67 REMARK 500 ALA C 88 176.49 172.87 REMARK 500 ASP C 96 40.07 -143.10 REMARK 500 PHE C 97 -50.36 69.31 REMARK 500 CYS C 140 92.97 -175.22 REMARK 500 SER C 172 72.55 55.57 REMARK 500 ASP C 173 24.56 44.57 REMARK 500 PRO C 212 135.76 -34.62 REMARK 500 THR D 51 -44.30 76.65 REMARK 500 ALA D 84 -176.60 178.05 REMARK 500 PRO D 120 153.15 -40.25 REMARK 500 PRO D 141 -172.92 -69.76 REMARK 500 PRO D 204 154.68 -40.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE END C 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z91 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN WITHOUT LIGAND MOLECULE REMARK 900 RELATED ID: 2Z92 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN IN COMPLEX WITH CTX3C-ABCDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. THIS SEQUENCE HAS BEEN DEPOSITED IN THE SEQUENCE DATABASE. DBREF 2Z93 A 0 217 PDB 2Z93 2Z93 0 217 DBREF 2Z93 C 3 217 PDB 2Z93 2Z93 3 217 DBREF 2Z93 B 2 214 PDB 2Z93 2Z93 2 214 DBREF 2Z93 D 1 214 PDB 2Z93 2Z93 1 214 SEQRES 1 A 218 GLN LEU LEU GLU SER GLY PRO ASP LEU VAL LYS PRO SER SEQRES 2 A 218 GLN SER LEU SER LEU THR CYS THR VAL THR GLY TYR SER SEQRES 3 A 218 ILE THR SER GLY TYR ASN TRP HIS TRP ILE ARG GLN PHE SEQRES 4 A 218 PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE HIS TYR SEQRES 5 A 218 ARG GLY THR THR ASN TYR ASN THR SER LEU LYS SER ARG SEQRES 6 A 218 ILE SER ILE THR ARG ASP SER SER LYS ASN GLN PHE PHE SEQRES 7 A 218 LEU GLN LEU ASN SER VAL THR THR GLU ASP THR ALA THR SEQRES 8 A 218 TYR TYR CYS ALA CYS ASP ASP PHE TYR SER ASP TYR TRP SEQRES 9 A 218 GLY GLN GLY THR ILE VAL THR VAL SER SER ALA LYS THR SEQRES 10 A 218 THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER ALA SEQRES 11 A 218 ALA GLN THR ASN SER MET VAL THR LEU GLY CYS LEU VAL SEQRES 12 A 218 LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SEQRES 13 A 218 SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 A 218 VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL SEQRES 15 A 218 THR VAL PRO SER SER THR TRP PRO SER GLU THR VAL THR SEQRES 16 A 218 CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP SEQRES 17 A 218 LYS LYS ILE VAL PRO ARG ASP CYS THR SER SEQRES 1 B 213 GLU LEU VAL MET THR GLN THR PRO ALA ILE MET SER ALA SEQRES 2 B 213 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 B 213 SER SER VAL SER SER VAL HIS TRP TYR GLN GLN LYS SER SEQRES 4 B 213 GLY THR SER PRO LYS ARG TRP ILE TYR ASP THR SER LYS SEQRES 5 B 213 LEU PRO SER GLY VAL PRO GLY ARG PHE SER GLY SER GLY SEQRES 6 B 213 SER GLY THR SER TYR SER LEU THR ILE SER SER MET GLU SEQRES 7 B 213 ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN TRP SER SEQRES 8 B 213 SER ASN PRO PRO THR PHE GLY ALA GLY THR LYS LEU GLU SEQRES 9 B 213 VAL LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 10 B 213 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 11 B 213 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 12 B 213 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 13 B 213 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 14 B 213 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 15 B 213 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 16 B 213 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 17 B 213 ASN ARG ASN GLU CYS SEQRES 1 C 218 GLN LEU LEU GLU SER GLY PRO ASP LEU VAL LYS PRO SER SEQRES 2 C 218 GLN SER LEU SER LEU THR CYS THR VAL THR GLY TYR SER SEQRES 3 C 218 ILE THR SER GLY TYR ASN TRP HIS TRP ILE ARG GLN PHE SEQRES 4 C 218 PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE HIS TYR SEQRES 5 C 218 ARG GLY THR THR ASN TYR ASN THR SER LEU LYS SER ARG SEQRES 6 C 218 ILE SER ILE THR ARG ASP SER SER LYS ASN GLN PHE PHE SEQRES 7 C 218 LEU GLN LEU ASN SER VAL THR THR GLU ASP THR ALA THR SEQRES 8 C 218 TYR TYR CYS ALA CYS ASP ASP PHE TYR SER ASP TYR TRP SEQRES 9 C 218 GLY GLN GLY THR ILE VAL THR VAL SER SER ALA LYS THR SEQRES 10 C 218 THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER ALA SEQRES 11 C 218 ALA GLN THR ASN SER MET VAL THR LEU GLY CYS LEU VAL SEQRES 12 C 218 LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SEQRES 13 C 218 SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 C 218 VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL SEQRES 15 C 218 THR VAL PRO SER SER THR TRP PRO SER GLU THR VAL THR SEQRES 16 C 218 CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP SEQRES 17 C 218 LYS LYS ILE VAL PRO ARG ASP CYS THR SER SEQRES 1 D 213 GLU LEU VAL MET THR GLN THR PRO ALA ILE MET SER ALA SEQRES 2 D 213 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 D 213 SER SER VAL SER SER VAL HIS TRP TYR GLN GLN LYS SER SEQRES 4 D 213 GLY THR SER PRO LYS ARG TRP ILE TYR ASP THR SER LYS SEQRES 5 D 213 LEU PRO SER GLY VAL PRO GLY ARG PHE SER GLY SER GLY SEQRES 6 D 213 SER GLY THR SER TYR SER LEU THR ILE SER SER MET GLU SEQRES 7 D 213 ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN TRP SER SEQRES 8 D 213 SER ASN PRO PRO THR PHE GLY ALA GLY THR LYS LEU GLU SEQRES 9 D 213 VAL LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 10 D 213 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 11 D 213 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 12 D 213 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 13 D 213 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 14 D 213 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 15 D 213 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 16 D 213 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 17 D 213 ASN ARG ASN GLU CYS HET END C 1 24 HETNAM END 1,6:5,9:8,12:11,16-TETRAANHYDRO-2,3,4,10,13,14- HETNAM 2 END HEXADEOXY-D-GLYCERO-D-ALLO-D-GULO-HEPTADECA-2,13- HETNAM 3 END DIENITOL FORMUL 5 END C17 H24 O7 FORMUL 6 HOH *121(H2 O) HELIX 1 1 PRO A 200 SER A 202 5 3 HELIX 2 2 SER B 121 SER B 127 1 7 HELIX 3 3 LYS B 183 GLU B 187 1 5 HELIX 4 4 THR C 61 LYS C 64 5 4 HELIX 5 5 THR C 83 THR C 87 5 5 HELIX 6 6 PRO C 200 SER C 202 5 3 HELIX 7 7 GLU D 79 ALA D 83 5 5 HELIX 8 8 GLU D 123 GLY D 128 1 6 SHEET 1 A 4 SER A 120 LEU A 124 0 SHEET 2 A 4 THR A 137 TYR A 145 -1 O LEU A 141 N TYR A 122 SHEET 3 A 4 LEU A 174 THR A 182 -1 O VAL A 181 N LEU A 138 SHEET 4 A 4 HIS A 164 THR A 165 -1 N HIS A 164 O SER A 180 SHEET 1 B 4 SER A 120 LEU A 124 0 SHEET 2 B 4 THR A 137 TYR A 145 -1 O LEU A 141 N TYR A 122 SHEET 3 B 4 LEU A 174 THR A 182 -1 O VAL A 181 N LEU A 138 SHEET 4 B 4 VAL A 169 GLN A 171 -1 N GLN A 171 O LEU A 174 SHEET 1 C 6 THR A 151 TRP A 154 0 SHEET 2 C 6 THR A 194 HIS A 199 -1 O ASN A 196 N THR A 153 SHEET 3 C 6 THR A 204 LYS A 209 -1 O VAL A 206 N VAL A 197 SHEET 4 C 6 THR C 204 ILE C 210 -1 O LYS C 205 N LYS A 205 SHEET 5 C 6 VAL C 193 HIS C 199 -1 N VAL C 193 O ILE C 210 SHEET 6 C 6 THR C 151 TRP C 154 -1 N THR C 153 O ASN C 196 SHEET 1 D 4 SER B 116 PHE B 118 0 SHEET 2 D 4 GLY B 129 PHE B 135 -1 O VAL B 133 N PHE B 118 SHEET 3 D 4 SER B 176 THR B 182 -1 O SER B 177 N CYS B 134 SHEET 4 D 4 VAL B 159 SER B 162 -1 N SER B 162 O SER B 176 SHEET 1 E 4 SER B 153 ARG B 155 0 SHEET 2 E 4 VAL B 146 ILE B 150 -1 N ILE B 150 O SER B 153 SHEET 3 E 4 SER B 191 ALA B 196 -1 O GLU B 195 N LYS B 147 SHEET 4 E 4 VAL B 206 ASN B 210 -1 O LYS B 207 N CYS B 194 SHEET 1 F 4 LEU C 4 SER C 7 0 SHEET 2 F 4 LEU C 18 VAL C 24 -1 O THR C 21 N SER C 7 SHEET 3 F 4 GLN C 77 LEU C 82 -1 O LEU C 82 N LEU C 18 SHEET 4 F 4 ILE C 67 ASP C 72 -1 N ASP C 72 O GLN C 77 SHEET 1 G 6 LEU C 11 VAL C 12 0 SHEET 2 G 6 THR C 107 VAL C 111 1 O THR C 110 N VAL C 12 SHEET 3 G 6 ALA C 88 ASP C 95 -1 N TYR C 90 O THR C 107 SHEET 4 G 6 ASN C 34 GLN C 39 -1 N ILE C 37 O TYR C 91 SHEET 5 G 6 LEU C 45 HIS C 52 -1 O MET C 48 N TRP C 36 SHEET 6 G 6 THR C 57 TYR C 59 -1 O ASN C 58 N TYR C 50 SHEET 1 H 4 LEU C 11 VAL C 12 0 SHEET 2 H 4 THR C 107 VAL C 111 1 O THR C 110 N VAL C 12 SHEET 3 H 4 ALA C 88 ASP C 95 -1 N TYR C 90 O THR C 107 SHEET 4 H 4 ASP C 101 TRP C 103 -1 O TYR C 102 N CYS C 94 SHEET 1 I 4 SER C 120 LEU C 124 0 SHEET 2 I 4 GLY C 139 TYR C 145 -1 O LEU C 141 N TYR C 122 SHEET 3 I 4 TYR C 175 VAL C 181 -1 O TYR C 175 N TYR C 145 SHEET 4 I 4 VAL C 163 THR C 165 -1 N HIS C 164 O SER C 180 SHEET 1 J 4 SER C 120 LEU C 124 0 SHEET 2 J 4 GLY C 139 TYR C 145 -1 O LEU C 141 N TYR C 122 SHEET 3 J 4 TYR C 175 VAL C 181 -1 O TYR C 175 N TYR C 145 SHEET 4 J 4 VAL C 169 LEU C 170 -1 N VAL C 169 O THR C 176 SHEET 1 K 4 MET D 4 THR D 7 0 SHEET 2 K 4 VAL D 19 ALA D 25 -1 O THR D 22 N THR D 7 SHEET 3 K 4 SER D 70 ILE D 75 -1 O TYR D 71 N CYS D 23 SHEET 4 K 4 PHE D 62 SER D 67 -1 N SER D 65 O SER D 72 SHEET 1 L 5 ILE D 10 ALA D 13 0 SHEET 2 L 5 THR D 102 VAL D 106 1 O GLU D 105 N MET D 11 SHEET 3 L 5 ALA D 84 GLN D 89 -1 N ALA D 84 O LEU D 104 SHEET 4 L 5 HIS D 34 GLN D 38 -1 N TYR D 36 O TYR D 87 SHEET 5 L 5 LYS D 45 ILE D 48 -1 O ILE D 48 N TRP D 35 SHEET 1 M 4 THR D 114 PHE D 118 0 SHEET 2 M 4 VAL D 132 PHE D 139 -1 O VAL D 133 N PHE D 118 SHEET 3 M 4 TYR D 173 LEU D 179 -1 O MET D 175 N LEU D 136 SHEET 4 M 4 LEU D 160 TRP D 163 -1 N SER D 162 O SER D 176 SHEET 1 N 2 ASN D 145 TRP D 148 0 SHEET 2 N 2 CYS D 194 THR D 197 -1 O GLU D 195 N LYS D 147 SSBOND 1 CYS A 140 CYS A 195 1555 1555 2.03 SSBOND 2 CYS B 134 CYS B 194 1555 1555 2.03 SSBOND 3 CYS C 22 CYS C 92 1555 1555 2.03 SSBOND 4 CYS C 140 CYS C 195 1555 1555 2.03 SSBOND 5 CYS D 23 CYS D 88 1555 1555 2.04 SSBOND 6 CYS D 134 CYS D 194 1555 1555 2.03 CISPEP 1 PHE A 146 PRO A 147 0 -0.31 CISPEP 2 GLU A 148 PRO A 149 0 -0.20 CISPEP 3 PHE C 146 PRO C 147 0 -0.24 CISPEP 4 GLU C 148 PRO C 149 0 0.02 CISPEP 5 TRP C 188 PRO C 189 0 0.09 CISPEP 6 THR D 7 PRO D 8 0 -0.15 CISPEP 7 ASN D 94 PRO D 95 0 0.36 CISPEP 8 TYR D 140 PRO D 141 0 0.07 SITE 1 AC1 11 HIS C 35A TRP C 47 ASN C 58 ASP C 95 SITE 2 AC1 11 TRP C 103 TYR D 36 ARG D 46 GLN D 89 SITE 3 AC1 11 TRP D 91 ASN D 94 PRO D 96 CRYST1 80.725 45.410 122.371 90.00 98.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012388 0.000000 0.001941 0.00000 SCALE2 0.000000 0.022022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008272 0.00000