HEADER ELECTRON TRANSPORT 26-OCT-07 2ZBO TITLE CRYSTAL STRUCTURE OF LOW-REDOX-POTENTIAL CYTOCHROM C6 FROM BROWN ALGA TITLE 2 HIZIKIA FUSIFORMIS AT 1.6 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C6; COMPND 3 CHAIN: A, C, E, G, I, K; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIZIKIA FUSIFORMIS; SOURCE 3 ORGANISM_TAXID: 74103; SOURCE 4 STRAIN: BROWN ALGA; SOURCE 5 GENE: PETJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS ELECTRON TRANSPORT, CYTOCHROME C6, REDOX POTENTIAL, BROWN ALGA, HEME, KEYWDS 2 IRON, METAL-BINDING, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR H.AKAZAKI,F.KAWAI,H.CHIDA,Y.MATSUMOTO,I.SIRASAKI,H.NAKADE,M.HIRAYAMA, AUTHOR 2 K.HOSIKAWA,K.SURUGA,T.SATOH,S.YAMADA,S.UNZAI,W.HAKAMATA,T.NISHIO,S.- AUTHOR 3 Y.PARK,T.OKU REVDAT 3 01-NOV-23 2ZBO 1 REMARK LINK REVDAT 2 24-FEB-09 2ZBO 1 VERSN REVDAT 1 30-SEP-08 2ZBO 0 JRNL AUTH H.AKAZAKI,F.KAWAI,H.CHIDA,Y.MATSUMOTO,M.HIRAYAMA, JRNL AUTH 2 K.HOSHIKAWA,S.UNZAI,W.HAKAMATA,T.NISHIO,S.-Y.PARK,T.OKU JRNL TITL CLONING, EXPRESSION AND PURIFICATION OF CYTOCHROME C(6) FROM JRNL TITL 2 THE BROWN ALGA HIZIKIA FUSIFORMIS AND COMPLETE X-RAY JRNL TITL 3 DIFFRACTION ANALYSIS OF THE STRUCTURE JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 64 674 2008 JRNL REFN ESSN 1744-3091 JRNL PMID 18678931 JRNL DOI 10.1107/S1744309108017752 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 101892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5347 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 315 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 278 REMARK 3 SOLVENT ATOMS : 540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4228 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5784 ; 1.165 ; 2.117 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 4.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;38.436 ;27.188 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;12.292 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.005 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3288 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2100 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2996 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 389 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2584 ; 0.779 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4068 ; 1.345 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 2.208 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1704 ; 3.310 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000027768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GDV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CAPS PH 10.5, 0.2M LI2SO4, 2.2M REMARK 280 AMSO4, 3% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.45550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.28900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.28900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.22775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.28900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.28900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 174.68325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.28900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.28900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.22775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.28900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.28900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 174.68325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.45550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -263.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, G, I, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 -123.32 50.00 REMARK 500 ASN C 80 -123.60 49.75 REMARK 500 ASN E 80 -121.10 50.98 REMARK 500 ASN G 46 -155.02 -101.87 REMARK 500 LYS G 79 111.30 -163.88 REMARK 500 ASN G 80 -119.96 53.49 REMARK 500 LYS I 79 110.35 -164.44 REMARK 500 ASN I 80 -119.87 55.84 REMARK 500 LYS K 79 112.17 -160.45 REMARK 500 ASN K 80 -120.09 54.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 111 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 NE2 REMARK 620 2 HEM A 111 NA 92.6 REMARK 620 3 HEM A 111 NB 92.2 90.7 REMARK 620 4 HEM A 111 NC 89.7 177.4 90.3 REMARK 620 5 HEM A 111 ND 88.9 89.8 178.8 89.1 REMARK 620 6 MET A 82 SD 175.6 83.8 90.6 93.7 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 111 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 42 NE2 REMARK 620 2 HEM C 111 NA 92.9 REMARK 620 3 HEM C 111 NB 90.5 90.0 REMARK 620 4 HEM C 111 NC 88.1 178.9 90.5 REMARK 620 5 HEM C 111 ND 89.5 90.3 179.8 89.3 REMARK 620 6 MET C 82 SD 175.3 82.7 91.0 96.3 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM E 111 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 42 NE2 REMARK 620 2 HEM E 111 NA 95.4 REMARK 620 3 HEM E 111 NB 88.9 88.4 REMARK 620 4 HEM E 111 NC 88.3 175.5 89.1 REMARK 620 5 HEM E 111 ND 91.5 92.0 179.4 90.4 REMARK 620 6 MET E 82 SD 176.6 81.2 91.4 95.1 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM G 111 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 42 NE2 REMARK 620 2 HEM G 111 NA 94.8 REMARK 620 3 HEM G 111 NB 91.7 90.6 REMARK 620 4 HEM G 111 NC 87.9 177.3 89.9 REMARK 620 5 HEM G 111 ND 88.7 90.8 178.5 88.7 REMARK 620 6 MET G 82 SD 176.2 82.4 90.8 94.9 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM I 111 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS I 42 NE2 REMARK 620 2 HEM I 111 NA 93.2 REMARK 620 3 HEM I 111 NB 90.5 90.2 REMARK 620 4 HEM I 111 NC 88.2 178.5 90.4 REMARK 620 5 HEM I 111 ND 88.9 91.1 178.6 88.3 REMARK 620 6 MET I 82 SD 175.9 83.0 90.9 95.6 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM K 111 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS K 42 NE2 REMARK 620 2 HEM K 111 NA 94.4 REMARK 620 3 HEM K 111 NB 90.3 90.8 REMARK 620 4 HEM K 111 NC 88.3 177.3 89.6 REMARK 620 5 HEM K 111 ND 89.7 89.8 179.4 89.8 REMARK 620 6 MET K 82 SD 176.2 82.2 91.4 95.2 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 I 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 K 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM E 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM G 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM I 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM K 111 DBREF 2ZBO A 25 110 UNP Q76FN8 Q76FN8_9PHAE 25 110 DBREF 2ZBO C 25 110 UNP Q76FN8 Q76FN8_9PHAE 25 110 DBREF 2ZBO E 25 110 UNP Q76FN8 Q76FN8_9PHAE 25 110 DBREF 2ZBO G 25 110 UNP Q76FN8 Q76FN8_9PHAE 25 110 DBREF 2ZBO I 25 110 UNP Q76FN8 Q76FN8_9PHAE 25 110 DBREF 2ZBO K 25 110 UNP Q76FN8 Q76FN8_9PHAE 25 110 SEQRES 1 A 86 ALA ASP ILE ASN HIS GLY GLU ASN VAL PHE THR ALA ASN SEQRES 2 A 86 CYS SER ALA CYS HIS ALA GLY GLY ASN ASN VAL ILE MET SEQRES 3 A 86 PRO GLU LYS THR LEU GLN LYS ASP ALA LEU SER THR ASN SEQRES 4 A 86 GLN MET ASN SER VAL GLY ALA ILE THR TYR GLN VAL THR SEQRES 5 A 86 ASN GLY LYS ASN ALA MET PRO ALA PHE GLY GLY ARG LEU SEQRES 6 A 86 SER ASP ASP ASP ILE GLU ASP VAL ALA SER PHE VAL LEU SEQRES 7 A 86 SER GLN SER GLU LYS SER TRP ASN SEQRES 1 C 86 ALA ASP ILE ASN HIS GLY GLU ASN VAL PHE THR ALA ASN SEQRES 2 C 86 CYS SER ALA CYS HIS ALA GLY GLY ASN ASN VAL ILE MET SEQRES 3 C 86 PRO GLU LYS THR LEU GLN LYS ASP ALA LEU SER THR ASN SEQRES 4 C 86 GLN MET ASN SER VAL GLY ALA ILE THR TYR GLN VAL THR SEQRES 5 C 86 ASN GLY LYS ASN ALA MET PRO ALA PHE GLY GLY ARG LEU SEQRES 6 C 86 SER ASP ASP ASP ILE GLU ASP VAL ALA SER PHE VAL LEU SEQRES 7 C 86 SER GLN SER GLU LYS SER TRP ASN SEQRES 1 E 86 ALA ASP ILE ASN HIS GLY GLU ASN VAL PHE THR ALA ASN SEQRES 2 E 86 CYS SER ALA CYS HIS ALA GLY GLY ASN ASN VAL ILE MET SEQRES 3 E 86 PRO GLU LYS THR LEU GLN LYS ASP ALA LEU SER THR ASN SEQRES 4 E 86 GLN MET ASN SER VAL GLY ALA ILE THR TYR GLN VAL THR SEQRES 5 E 86 ASN GLY LYS ASN ALA MET PRO ALA PHE GLY GLY ARG LEU SEQRES 6 E 86 SER ASP ASP ASP ILE GLU ASP VAL ALA SER PHE VAL LEU SEQRES 7 E 86 SER GLN SER GLU LYS SER TRP ASN SEQRES 1 G 86 ALA ASP ILE ASN HIS GLY GLU ASN VAL PHE THR ALA ASN SEQRES 2 G 86 CYS SER ALA CYS HIS ALA GLY GLY ASN ASN VAL ILE MET SEQRES 3 G 86 PRO GLU LYS THR LEU GLN LYS ASP ALA LEU SER THR ASN SEQRES 4 G 86 GLN MET ASN SER VAL GLY ALA ILE THR TYR GLN VAL THR SEQRES 5 G 86 ASN GLY LYS ASN ALA MET PRO ALA PHE GLY GLY ARG LEU SEQRES 6 G 86 SER ASP ASP ASP ILE GLU ASP VAL ALA SER PHE VAL LEU SEQRES 7 G 86 SER GLN SER GLU LYS SER TRP ASN SEQRES 1 I 86 ALA ASP ILE ASN HIS GLY GLU ASN VAL PHE THR ALA ASN SEQRES 2 I 86 CYS SER ALA CYS HIS ALA GLY GLY ASN ASN VAL ILE MET SEQRES 3 I 86 PRO GLU LYS THR LEU GLN LYS ASP ALA LEU SER THR ASN SEQRES 4 I 86 GLN MET ASN SER VAL GLY ALA ILE THR TYR GLN VAL THR SEQRES 5 I 86 ASN GLY LYS ASN ALA MET PRO ALA PHE GLY GLY ARG LEU SEQRES 6 I 86 SER ASP ASP ASP ILE GLU ASP VAL ALA SER PHE VAL LEU SEQRES 7 I 86 SER GLN SER GLU LYS SER TRP ASN SEQRES 1 K 86 ALA ASP ILE ASN HIS GLY GLU ASN VAL PHE THR ALA ASN SEQRES 2 K 86 CYS SER ALA CYS HIS ALA GLY GLY ASN ASN VAL ILE MET SEQRES 3 K 86 PRO GLU LYS THR LEU GLN LYS ASP ALA LEU SER THR ASN SEQRES 4 K 86 GLN MET ASN SER VAL GLY ALA ILE THR TYR GLN VAL THR SEQRES 5 K 86 ASN GLY LYS ASN ALA MET PRO ALA PHE GLY GLY ARG LEU SEQRES 6 K 86 SER ASP ASP ASP ILE GLU ASP VAL ALA SER PHE VAL LEU SEQRES 7 K 86 SER GLN SER GLU LYS SER TRP ASN HET HEM A 111 43 HET SO4 A 2 5 HET HEM C 111 43 HET HEM E 111 43 HET HEM G 111 43 HET SO4 G 1 5 HET HEM I 111 43 HET SO4 I 3 5 HET HEM K 111 43 HET SO4 K 4 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 7 HEM 6(C34 H32 FE N4 O4) FORMUL 8 SO4 4(O4 S 2-) FORMUL 17 HOH *540(H2 O) HELIX 1 1 ASP A 26 CYS A 38 1 13 HELIX 2 2 CYS A 38 ALA A 43 1 6 HELIX 3 3 GLY A 44 ASN A 46 5 3 HELIX 4 4 GLN A 56 ASN A 63 1 8 HELIX 5 5 SER A 67 GLY A 78 1 12 HELIX 6 6 SER A 90 LYS A 107 1 18 HELIX 7 7 ASP C 26 CYS C 38 1 13 HELIX 8 8 CYS C 38 ALA C 43 1 6 HELIX 9 9 GLY C 44 ASN C 46 5 3 HELIX 10 10 GLN C 56 ASN C 63 1 8 HELIX 11 11 SER C 67 GLY C 78 1 12 HELIX 12 12 SER C 90 LYS C 107 1 18 HELIX 13 13 ASP E 26 CYS E 38 1 13 HELIX 14 14 CYS E 38 ALA E 43 1 6 HELIX 15 15 GLY E 44 ASN E 46 5 3 HELIX 16 16 GLN E 56 ASN E 63 1 8 HELIX 17 17 SER E 67 GLY E 78 1 12 HELIX 18 18 SER E 90 LYS E 107 1 18 HELIX 19 19 ASP G 26 CYS G 38 1 13 HELIX 20 20 CYS G 38 ALA G 43 1 6 HELIX 21 21 GLY G 44 ASN G 46 5 3 HELIX 22 22 GLN G 56 ASN G 63 1 8 HELIX 23 23 SER G 67 GLY G 78 1 12 HELIX 24 24 SER G 90 LYS G 107 1 18 HELIX 25 25 ASP I 26 CYS I 38 1 13 HELIX 26 26 CYS I 38 ALA I 43 1 6 HELIX 27 27 GLY I 44 ASN I 46 5 3 HELIX 28 28 GLN I 56 ASN I 63 1 8 HELIX 29 29 SER I 67 GLY I 78 1 12 HELIX 30 30 SER I 90 LYS I 107 1 18 HELIX 31 31 ASP K 26 CYS K 38 1 13 HELIX 32 32 CYS K 38 ALA K 43 1 6 HELIX 33 33 GLY K 44 ASN K 46 5 3 HELIX 34 34 GLN K 56 ASN K 63 1 8 HELIX 35 35 SER K 67 GLY K 78 1 12 HELIX 36 36 SER K 90 LYS K 107 1 18 LINK SG CYS A 38 CAB HEM A 111 1555 1555 1.65 LINK SG CYS A 41 CAC HEM A 111 1555 1555 1.68 LINK SG CYS C 38 CAB HEM C 111 1555 1555 1.65 LINK SG CYS C 41 CAC HEM C 111 1555 1555 1.69 LINK SG CYS E 38 CAB HEM E 111 1555 1555 1.65 LINK SG CYS E 41 CAC HEM E 111 1555 1555 1.67 LINK SG CYS G 38 CAB HEM G 111 1555 1555 1.65 LINK SG CYS G 41 CAC HEM G 111 1555 1555 1.67 LINK SG CYS I 38 CAB HEM I 111 1555 1555 1.63 LINK SG CYS I 41 CAC HEM I 111 1555 1555 1.68 LINK SG CYS K 38 CAB HEM K 111 1555 1555 1.66 LINK SG CYS K 41 CAC HEM K 111 1555 1555 1.68 LINK NE2 HIS A 42 FE HEM A 111 1555 1555 1.95 LINK SD MET A 82 FE HEM A 111 1555 1555 2.34 LINK NE2 HIS C 42 FE HEM C 111 1555 1555 1.96 LINK SD MET C 82 FE HEM C 111 1555 1555 2.32 LINK NE2 HIS E 42 FE HEM E 111 1555 1555 1.91 LINK SD MET E 82 FE HEM E 111 1555 1555 2.34 LINK NE2 HIS G 42 FE HEM G 111 1555 1555 1.93 LINK SD MET G 82 FE HEM G 111 1555 1555 2.33 LINK NE2 HIS I 42 FE HEM I 111 1555 1555 1.94 LINK SD MET I 82 FE HEM I 111 1555 1555 2.33 LINK NE2 HIS K 42 FE HEM K 111 1555 1555 1.93 LINK SD MET K 82 FE HEM K 111 1555 1555 2.33 SITE 1 AC1 7 SER E 67 VAL E 68 HOH E 124 SER G 90 SITE 2 AC1 7 ASP G 91 HOH G 313 HOH G 374 SITE 1 AC2 11 GLY A 87 ARG A 88 HOH A 167 HOH A 206 SITE 2 AC2 11 HOH A 216 HOH A 223 HOH A 225 GLY C 87 SITE 3 AC2 11 ARG C 88 GLY E 87 ARG E 88 SITE 1 AC3 8 GLY A 44 TRP A 109 MET I 50 PRO I 51 SITE 2 AC3 8 GLU I 52 HOH I 113 HOH I 114 HOH I 116 SITE 1 AC4 7 GLY C 44 TRP C 109 HOH C 149 MET K 50 SITE 2 AC4 7 PRO K 51 GLU K 52 HOH K 119 SITE 1 AC5 21 ASN A 37 CYS A 38 CYS A 41 HIS A 42 SITE 2 AC5 21 ASN A 47 LYS A 53 THR A 54 LEU A 55 SITE 3 AC5 21 ALA A 59 ASN A 63 GLN A 74 VAL A 75 SITE 4 AC5 21 LYS A 79 ASN A 80 MET A 82 PHE A 85 SITE 5 AC5 21 HOH A 138 HOH A 157 HOH A 194 HOH A 198 SITE 6 AC5 21 ALA C 36 SITE 1 AC6 19 ASN C 37 CYS C 38 CYS C 41 HIS C 42 SITE 2 AC6 19 ASN C 47 LYS C 53 THR C 54 LEU C 55 SITE 3 AC6 19 ALA C 59 ASN C 63 GLN C 74 VAL C 75 SITE 4 AC6 19 LYS C 79 ASN C 80 MET C 82 PHE C 85 SITE 5 AC6 19 HOH C 120 HOH C 134 ALA E 36 SITE 1 AC7 20 ALA A 36 ASN E 37 CYS E 38 CYS E 41 SITE 2 AC7 20 HIS E 42 ASN E 47 LYS E 53 THR E 54 SITE 3 AC7 20 LEU E 55 ALA E 59 ASN E 63 GLN E 74 SITE 4 AC7 20 VAL E 75 LYS E 79 ASN E 80 MET E 82 SITE 5 AC7 20 PHE E 85 HOH E 125 HOH E 133 HOH E 162 SITE 1 AC8 18 ASN G 37 CYS G 38 CYS G 41 HIS G 42 SITE 2 AC8 18 ASN G 47 LYS G 53 THR G 54 LEU G 55 SITE 3 AC8 18 ASN G 63 MET G 65 GLN G 74 VAL G 75 SITE 4 AC8 18 LYS G 79 ASN G 80 MET G 82 PHE G 85 SITE 5 AC8 18 HOH G 301 HOH G 307 SITE 1 AC9 19 ASN I 37 CYS I 38 CYS I 41 HIS I 42 SITE 2 AC9 19 ASN I 47 MET I 50 LYS I 53 THR I 54 SITE 3 AC9 19 LEU I 55 ALA I 59 ASN I 63 MET I 65 SITE 4 AC9 19 GLN I 74 LYS I 79 ASN I 80 MET I 82 SITE 5 AC9 19 PHE I 85 HOH I 120 HOH I 126 SITE 1 BC1 21 ASN K 37 CYS K 38 CYS K 41 HIS K 42 SITE 2 BC1 21 ASN K 47 ILE K 49 MET K 50 LYS K 53 SITE 3 BC1 21 THR K 54 LEU K 55 ALA K 59 ASN K 63 SITE 4 BC1 21 GLN K 74 VAL K 75 LYS K 79 ASN K 80 SITE 5 BC1 21 MET K 82 PHE K 85 HOH K 127 HOH K 133 SITE 6 BC1 21 HOH K 177 CRYST1 84.578 84.578 232.911 90.00 90.00 90.00 P 41 21 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004293 0.00000