HEADER OXIDOREDUCTASE 13-NOV-07 2ZCV TITLE CRYSTAL STRUCTURE OF NADPH-DEPENDENT QUINONE OXIDOREDUCTASE QOR2 TITLE 2 COMPLEXED WITH NADPH FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED OXIDOREDUCTASE YTFG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN YTFG, YTFG GENE PRODUCT, NADPH- COMPND 5 DEPENDENT QUINONE OXIDOREDUCTASE; COMPND 6 EC: 1.6.5.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: STRAIN K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ALPHA-BETA SANDWICH, COMPLEX WITH NADPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.K.KIM,H.S.YIM,M.K.KIM,D.W.KIM,Y.M.KIM,S.S.CHA,S.O.KANG REVDAT 4 01-NOV-23 2ZCV 1 REMARK LINK REVDAT 3 20-NOV-13 2ZCV 1 HET HETATM HETNAM VERSN REVDAT 2 24-FEB-09 2ZCV 1 VERSN REVDAT 1 27-MAY-08 2ZCV 0 JRNL AUTH I.K.KIM,H.S.YIM,M.K.KIM,D.W.KIM,Y.M.KIM,S.S.CHA,S.O.KANG JRNL TITL CRYSTAL STRUCTURE OF A NEW TYPE OF NADPH-DEPENDENT QUINONE JRNL TITL 2 OXIDOREDUCTASE (QOR2) FROM ESCHERICHIA COLI JRNL REF J.MOL.BIOL. V. 379 372 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18455185 JRNL DOI 10.1016/J.JMB.2008.04.003 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 198248.850 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 10926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1135 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1458 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 178 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.77000 REMARK 3 B22 (A**2) : 8.77000 REMARK 3 B33 (A**2) : -17.54000 REMARK 3 B12 (A**2) : 9.78000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.720 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 73.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NADP9.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NADP9.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000027811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12714 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PROTEUM 300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SMART REMARK 200 DATA SCALING SOFTWARE : SAINT & PROSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2ZCU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, COPPER CHLRORIDE, HEPES, REMARK 280 AMMONIUM SULFATE, PH 7.50, EVAPORATION, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.67067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.83533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.83533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.67067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 284 REMARK 465 ASN A 285 REMARK 465 ASN A 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LEU A 41 CG CD1 CD2 REMARK 470 TYR A 53 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 GLN A 220 CG CD OE1 NE2 REMARK 470 SER A 233 OG REMARK 470 LEU A 236 CG CD1 CD2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 ASN A 283 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 43 48.77 -84.61 REMARK 500 GLN A 44 -11.33 -158.75 REMARK 500 SER A 73 156.48 -46.45 REMARK 500 VAL A 77 107.64 -53.42 REMARK 500 SER A 103 -142.20 -109.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1001 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 276 OE2 REMARK 620 2 HIS A 280 NE2 143.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZCU RELATED DB: PDB DBREF 2ZCV A 1 286 UNP P39315 YTFG_ECOLI 1 286 SEQRES 1 A 286 MET ILE ALA ILE THR GLY ALA THR GLY GLN LEU GLY HIS SEQRES 2 A 286 TYR VAL ILE GLU SER LEU MET LYS THR VAL PRO ALA SER SEQRES 3 A 286 GLN ILE VAL ALA ILE VAL ARG ASN PRO ALA LYS ALA GLN SEQRES 4 A 286 ALA LEU ALA ALA GLN GLY ILE THR VAL ARG GLN ALA ASP SEQRES 5 A 286 TYR GLY ASP GLU ALA ALA LEU THR SER ALA LEU GLN GLY SEQRES 6 A 286 VAL GLU LYS LEU LEU LEU ILE SER SER SER GLU VAL GLY SEQRES 7 A 286 GLN ARG ALA PRO GLN HIS ARG ASN VAL ILE ASN ALA ALA SEQRES 8 A 286 LYS ALA ALA GLY VAL LYS PHE ILE ALA TYR THR SER LEU SEQRES 9 A 286 LEU HIS ALA ASP THR SER PRO LEU GLY LEU ALA ASP GLU SEQRES 10 A 286 HIS ILE GLU THR GLU LYS MET LEU ALA ASP SER GLY ILE SEQRES 11 A 286 VAL TYR THR LEU LEU ARG ASN GLY TRP TYR SER GLU ASN SEQRES 12 A 286 TYR LEU ALA SER ALA PRO ALA ALA LEU GLU HIS GLY VAL SEQRES 13 A 286 PHE ILE GLY ALA ALA GLY ASP GLY LYS ILE ALA SER ALA SEQRES 14 A 286 THR ARG ALA ASP TYR ALA ALA ALA ALA ALA ARG VAL ILE SEQRES 15 A 286 SER GLU ALA GLY HIS GLU GLY LYS VAL TYR GLU LEU ALA SEQRES 16 A 286 GLY ASP SER ALA TRP THR LEU THR GLN LEU ALA ALA GLU SEQRES 17 A 286 LEU THR LYS GLN SER GLY LYS GLN VAL THR TYR GLN ASN SEQRES 18 A 286 LEU SER GLU ALA ASP PHE ALA ALA ALA LEU LYS SER VAL SEQRES 19 A 286 GLY LEU PRO ASP GLY LEU ALA ASP MET LEU ALA ASP SER SEQRES 20 A 286 ASP VAL GLY ALA SER LYS GLY GLY LEU PHE ASP ASP SER SEQRES 21 A 286 LYS THR LEU SER LYS LEU ILE GLY HIS PRO THR THR THR SEQRES 22 A 286 LEU ALA GLU SER VAL SER HIS LEU PHE ASN VAL ASN ASN HET CU A1001 1 HET SO4 A1002 5 HET SO4 A1003 5 HET NDP A 400 48 HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 CU CU 2+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 NDP C21 H30 N7 O17 P3 FORMUL 6 HOH *223(H2 O) HELIX 1 1 GLY A 9 MET A 20 1 12 HELIX 2 2 PRO A 24 SER A 26 5 3 HELIX 3 3 ASN A 34 LYS A 37 5 4 HELIX 4 4 ALA A 38 ALA A 43 1 6 HELIX 5 5 ASP A 55 LEU A 63 1 9 HELIX 6 6 GLN A 79 GLY A 95 1 17 HELIX 7 7 LEU A 114 GLY A 129 1 16 HELIX 8 8 ASN A 143 ALA A 146 5 4 HELIX 9 9 SER A 147 HIS A 154 1 8 HELIX 10 10 THR A 170 GLU A 184 1 15 HELIX 11 11 THR A 201 GLY A 214 1 14 HELIX 12 12 SER A 223 VAL A 234 1 12 HELIX 13 13 PRO A 237 LYS A 253 1 17 HELIX 14 14 LYS A 261 GLY A 268 1 8 HELIX 15 15 THR A 273 LEU A 281 1 9 SHEET 1 A 7 THR A 47 GLN A 50 0 SHEET 2 A 7 ILE A 28 VAL A 32 1 N ALA A 30 O THR A 47 SHEET 3 A 7 ILE A 2 THR A 5 1 N ILE A 4 O VAL A 29 SHEET 4 A 7 LYS A 68 LEU A 71 1 O LYS A 68 N ALA A 3 SHEET 5 A 7 PHE A 98 LEU A 104 1 O PHE A 98 N LEU A 69 SHEET 6 A 7 TYR A 132 ASN A 137 1 O LEU A 135 N TYR A 101 SHEET 7 A 7 VAL A 191 LEU A 194 1 O TYR A 192 N LEU A 134 SHEET 1 B 2 VAL A 156 GLY A 159 0 SHEET 2 B 2 THR A 218 ASN A 221 1 O GLN A 220 N PHE A 157 LINK OE2 GLU A 276 CU CU A1001 1555 1555 2.62 LINK NE2 HIS A 280 CU CU A1001 1555 1555 2.25 SITE 1 AC1 4 HIS A 13 GLU A 17 GLU A 276 HIS A 280 SITE 1 AC2 6 SER A 18 LYS A 21 ALA A 176 ARG A 180 SITE 2 AC2 6 HIS A 269 SO4 A1003 SITE 1 AC3 7 LYS A 21 ALA A 172 ASP A 173 ALA A 176 SITE 2 AC3 7 ILE A 267 HIS A 269 SO4 A1002 SITE 1 AC4 20 GLY A 6 THR A 8 GLY A 9 GLN A 10 SITE 2 AC4 20 LEU A 11 ARG A 33 TYR A 53 SER A 73 SITE 3 AC4 20 SER A 74 SER A 75 GLN A 83 ASN A 137 SITE 4 AC4 20 GLY A 138 TRP A 139 TYR A 140 ASN A 143 SITE 5 AC4 20 ARG A 171 HOH A1011 HOH A1102 HOH A1227 CRYST1 81.284 81.284 77.506 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012303 0.007103 0.000000 0.00000 SCALE2 0.000000 0.014206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012902 0.00000